==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 06-OCT-04 1XOK . COMPND 2 MOLECULE: ALFALFA MOSAIC VIRUS RNA 3' UTR; . SOURCE 2 SYNTHETIC: YES; . AUTHOR L.M.GUOGAS,D.J.FILMAN,J.M.HOGLE,L.GEHRKE . 33 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3762.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 C G 0 0 139 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -93.4 41.0 16.0 38.6 2 13 C K - 0 0 77 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.694 360.0 -93.5-102.1 154.1 40.0 12.7 40.3 3 14 C P - 0 0 89 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.252 44.1-165.2 -61.0 152.7 40.1 9.2 38.9 4 15 C T > - 0 0 57 1,-0.1 4,-3.7 0, 0.0 5,-0.4 -0.897 37.1-102.1-136.3 163.5 36.9 8.0 37.3 5 16 C K H > S+ 0 0 170 -2,-0.3 4,-3.9 1,-0.2 5,-0.2 0.958 124.4 47.0 -49.5 -52.2 35.6 4.6 36.2 6 17 C R H > S+ 0 0 218 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.901 116.8 39.9 -56.4 -52.3 36.5 5.5 32.6 7 18 C S H > S+ 0 0 51 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.892 118.6 48.9 -67.4 -39.0 40.0 6.9 33.3 8 19 C Q H X S+ 0 0 101 -4,-3.7 4,-2.0 2,-0.2 -2,-0.2 0.943 111.7 48.9 -63.7 -48.1 40.6 4.1 35.8 9 20 C N H X S+ 0 0 102 -4,-3.9 4,-2.0 -5,-0.4 5,-0.3 0.880 111.0 50.8 -58.3 -40.4 39.3 1.5 33.2 10 21 C Y H X S+ 0 0 127 -4,-2.2 4,-2.7 -5,-0.2 -1,-0.2 0.949 107.2 53.1 -62.8 -50.1 41.6 3.1 30.7 11 22 C A H X S+ 0 0 40 -4,-2.7 4,-1.1 2,-0.2 -2,-0.2 0.819 110.0 50.6 -53.1 -37.9 44.6 2.9 33.0 12 23 C A H >< S+ 0 0 55 -4,-2.0 3,-1.6 2,-0.3 -2,-0.2 0.998 115.4 36.5 -65.2 -70.2 43.9 -0.8 33.5 13 24 C L H 3< S+ 0 0 151 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.851 120.9 53.8 -51.1 -33.8 43.6 -2.0 29.9 14 25 C R H 3< 0 0 138 -4,-2.7 -1,-0.3 -5,-0.3 -2,-0.3 0.715 360.0 360.0 -71.9 -27.8 46.3 0.6 29.4 15 26 C K << 0 0 238 -3,-1.6 -3,-0.1 -4,-1.1 -4,-0.0 -0.207 360.0 360.0 -75.9 360.0 48.6 -1.0 32.1 16 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 17 9 D G 0 0 100 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 0.000 360.0 360.0 360.0 27.9 51.0 5.9 24.2 18 10 D K - 0 0 84 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.917 360.0-160.0-133.9 161.6 48.6 8.3 22.5 19 11 D A - 0 0 107 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 0.879 12.8-156.8-106.5 -68.1 45.4 10.2 23.4 20 12 D G - 0 0 69 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.657 21.0-118.9 87.8 116.1 43.1 11.6 20.6 21 13 D K - 0 0 195 1,-0.0 5,-0.1 5,-0.0 2,-0.1 -0.752 21.9-123.2 -91.3 127.0 40.7 14.5 21.2 22 14 D P - 0 0 87 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.490 37.0-168.4 -66.1 133.8 37.0 14.0 20.8 23 15 D T > - 0 0 66 -2,-0.1 4,-2.0 1,-0.0 5,-0.2 -0.350 39.3 -86.0-108.2-170.9 35.7 16.5 18.2 24 16 D K H > S+ 0 0 84 2,-0.2 4,-2.1 3,-0.2 5,-0.1 0.875 127.7 43.4 -70.6 -36.0 32.3 17.6 17.1 25 17 D R H > S+ 0 0 203 2,-0.2 4,-3.4 3,-0.2 5,-0.3 0.960 112.9 49.0 -73.9 -52.9 32.1 14.8 14.5 26 18 D S H > S+ 0 0 53 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.953 117.7 42.3 -50.3 -53.5 33.4 12.1 16.7 27 19 D Q H X S+ 0 0 116 -4,-2.0 4,-2.9 1,-0.2 -1,-0.2 0.913 113.2 52.6 -60.4 -44.9 31.0 13.1 19.5 28 20 D N H X S+ 0 0 95 -4,-2.1 4,-1.9 -5,-0.2 -1,-0.2 0.923 109.5 49.7 -58.2 -45.2 28.1 13.6 17.1 29 21 D Y H X S+ 0 0 147 -4,-3.4 4,-1.3 1,-0.2 3,-0.3 0.973 113.4 46.0 -57.0 -53.8 28.7 10.1 15.7 30 22 D A H < S+ 0 0 62 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.831 106.6 58.3 -57.8 -38.3 28.8 8.6 19.2 31 23 D A H < S+ 0 0 81 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.928 111.2 42.1 -58.6 -43.5 25.7 10.5 20.2 32 24 D L H < S+ 0 0 132 -4,-1.9 2,-0.4 -3,-0.3 -1,-0.2 0.671 91.9 105.3 -75.2 -20.6 23.7 8.9 17.3 33 25 D R < 0 0 168 -4,-1.3 -3,-0.0 -5,-0.2 -4,-0.0 -0.488 360.0 360.0 -66.3 114.7 25.4 5.5 18.1 34 26 D K 0 0 160 -2,-0.4 -1,-0.2 0, 0.0 -2,-0.0 0.911 360.0 360.0 -82.8 360.0 22.7 3.4 19.9