==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 14-OCT-04 1XRD . COMPND 2 MOLECULE: LIGHT-HARVESTING PROTEIN B-880, ALPHA CHAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; . AUTHOR Z.-Y.WANG,K.GOKAN,M.KOBAYASHI,T.NOZAWA . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5471.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 73.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M > 0 0 182 0, 0.0 3,-2.9 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 77.8 5.8 -31.1 -3.8 2 2 A W G > - 0 0 214 1,-0.3 3,-2.0 2,-0.2 4,-0.3 0.768 360.0 -85.5 44.8 29.5 2.9 -31.9 -6.2 3 3 A R G > S- 0 0 204 1,-0.3 3,-1.8 2,-0.2 -1,-0.3 0.777 72.7 -74.9 45.3 29.8 2.2 -28.2 -6.1 4 4 A I G X> S- 0 0 63 -3,-2.9 3,-3.0 1,-0.3 4,-0.5 0.907 75.0 -75.7 50.6 47.7 0.1 -29.0 -3.0 5 5 A W G <4 S- 0 0 195 -3,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.772 70.9 -88.7 33.9 37.6 -2.6 -30.5 -5.2 6 6 A Q G <4 S+ 0 0 134 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.765 102.2 123.0 34.0 36.8 -3.5 -26.9 -6.0 7 7 A L T <4 S- 0 0 117 -3,-3.0 2,-0.2 -4,-0.2 -2,-0.1 0.951 84.1 -12.8 -85.1 -68.5 -5.8 -27.1 -2.9 8 8 A F S < S+ 0 0 151 -4,-0.5 -1,-0.1 3,-0.1 -2,-0.1 -0.661 122.9 56.5-140.4 81.4 -4.6 -24.3 -0.6 9 9 A D S > S+ 0 0 80 -2,-0.2 4,-2.6 -6,-0.1 5,-0.2 0.158 89.7 58.2-167.0 -56.3 -1.3 -22.8 -1.7 10 10 A P H > S+ 0 0 30 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.966 113.2 40.1 -55.6 -58.9 -1.2 -21.5 -5.3 11 11 A R H > S+ 0 0 131 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.934 117.5 48.9 -57.1 -49.6 -4.0 -19.0 -4.9 12 12 A Q H > S+ 0 0 108 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.857 109.5 54.5 -59.4 -36.1 -2.8 -17.9 -1.4 13 13 A A H X S+ 0 0 52 -4,-2.6 4,-2.3 2,-0.2 -1,-0.2 0.928 110.1 44.2 -64.2 -46.5 0.7 -17.5 -2.8 14 14 A L H X S+ 0 0 115 -4,-2.3 4,-2.2 1,-0.2 5,-0.3 0.867 113.4 51.9 -66.9 -35.7 -0.4 -15.1 -5.5 15 15 A V H X S+ 0 0 67 -4,-2.4 4,-1.5 -5,-0.2 -1,-0.2 0.787 109.6 51.6 -70.5 -27.4 -2.6 -13.3 -3.0 16 16 A G H X S+ 0 0 38 -4,-1.6 4,-2.4 -5,-0.2 -2,-0.2 0.942 114.9 38.5 -74.7 -49.1 0.4 -13.0 -0.7 17 17 A L H X S+ 0 0 112 -4,-2.3 4,-2.7 2,-0.2 5,-0.3 0.977 120.9 44.7 -63.6 -57.8 2.8 -11.5 -3.3 18 18 A A H X S+ 0 0 51 -4,-2.2 4,-2.4 1,-0.2 5,-0.2 0.909 119.2 42.3 -53.5 -48.7 0.2 -9.3 -5.0 19 19 A T H X S+ 0 0 70 -4,-1.5 4,-2.8 -5,-0.3 5,-0.3 0.870 112.2 55.8 -68.3 -37.6 -1.3 -8.1 -1.7 20 20 A F H X S+ 0 0 144 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.951 115.0 36.1 -60.1 -52.7 2.2 -7.7 -0.1 21 21 A L H X S+ 0 0 102 -4,-2.7 4,-2.4 2,-0.2 5,-0.4 0.944 118.4 51.1 -66.5 -49.2 3.5 -5.4 -2.8 22 22 A F H X S+ 0 0 134 -4,-2.4 4,-1.6 -5,-0.3 -2,-0.2 0.916 115.2 42.0 -54.2 -49.2 0.1 -3.6 -3.3 23 23 A V H X S+ 0 0 55 -4,-2.8 4,-3.0 -5,-0.2 5,-0.2 0.937 114.4 51.3 -65.8 -48.6 -0.2 -2.9 0.4 24 24 A L H X S+ 0 0 78 -4,-2.3 4,-2.1 -5,-0.3 -2,-0.2 0.972 115.9 38.4 -52.4 -65.0 3.4 -1.9 1.0 25 25 A A H X S+ 0 0 46 -4,-2.4 4,-2.5 1,-0.2 5,-0.3 0.823 114.9 58.2 -57.6 -31.7 3.6 0.6 -1.9 26 26 A L H X S+ 0 0 81 -4,-1.6 4,-2.6 -5,-0.4 -1,-0.2 0.946 107.0 44.8 -64.0 -49.4 0.0 1.7 -0.9 27 27 A L H X S+ 0 0 100 -4,-3.0 4,-2.6 2,-0.2 5,-0.3 0.869 114.5 51.4 -62.8 -37.9 1.0 2.6 2.6 28 28 A I H X S+ 0 0 82 -4,-2.1 4,-2.7 -5,-0.2 5,-0.3 0.990 117.2 34.9 -63.1 -62.9 4.1 4.4 1.4 29 29 A H H X S+ 0 0 125 -4,-2.5 4,-2.8 1,-0.2 5,-0.3 0.871 120.0 52.9 -59.9 -38.6 2.4 6.6 -1.2 30 30 A F H X S+ 0 0 127 -4,-2.6 4,-2.5 -5,-0.3 -1,-0.2 0.912 112.7 42.4 -64.7 -45.2 -0.7 6.9 1.0 31 31 A I H X S+ 0 0 107 -4,-2.6 4,-3.0 -5,-0.2 5,-0.3 0.937 120.9 40.6 -68.7 -47.6 1.3 8.1 4.1 32 32 A L H X S+ 0 0 72 -4,-2.7 4,-2.8 -5,-0.3 5,-0.2 0.942 120.4 44.3 -66.0 -47.7 3.6 10.4 2.2 33 33 A L H X S+ 0 0 70 -4,-2.8 4,-2.9 -5,-0.3 5,-0.4 0.921 117.5 46.3 -61.9 -45.5 0.8 11.7 -0.0 34 34 A S H X S+ 0 0 50 -4,-2.5 4,-2.8 -5,-0.3 5,-0.2 0.960 117.7 40.6 -62.1 -55.3 -1.6 12.0 2.9 35 35 A T H X S+ 0 0 78 -4,-3.0 4,-2.2 -5,-0.2 5,-0.3 0.880 118.6 49.0 -62.4 -39.6 0.9 13.7 5.3 36 36 A E H X S+ 0 0 125 -4,-2.8 4,-1.2 -5,-0.3 -2,-0.2 0.975 118.3 36.4 -64.6 -57.7 2.2 15.9 2.4 37 37 A R H X S+ 0 0 121 -4,-2.9 4,-2.4 -5,-0.2 5,-0.3 0.865 119.3 52.9 -64.1 -37.4 -1.2 17.1 1.1 38 38 A F H X S+ 0 0 130 -4,-2.8 4,-2.2 -5,-0.4 -2,-0.2 0.995 113.1 38.5 -61.5 -66.9 -2.5 17.2 4.6 39 39 A N H X S+ 0 0 78 -4,-2.2 4,-2.0 -5,-0.2 -1,-0.2 0.728 115.5 61.2 -57.8 -20.4 0.1 19.4 6.3 40 40 A W H < S+ 0 0 157 -4,-1.2 3,-0.5 -5,-0.3 7,-0.2 0.997 114.4 27.8 -68.7 -70.7 0.1 21.3 3.0 41 41 A L H < S+ 0 0 138 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.708 116.6 70.9 -63.4 -17.3 -3.5 22.5 2.9 42 42 A E H < S- 0 0 109 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.959 97.7-140.1 -63.5 -53.4 -3.1 22.3 6.7 43 43 A G < + 0 0 20 -4,-2.0 -3,-0.1 -3,-0.5 -2,-0.1 0.658 41.0 151.4 91.0 112.3 -0.7 25.3 6.9 44 44 A A S S- 0 0 57 -4,-0.1 -1,-0.1 -5,-0.1 5,-0.1 -0.293 83.2 -28.0-172.1 74.2 2.3 25.4 9.2 45 45 A S S S+ 0 0 117 3,-0.3 4,-0.1 1,-0.0 -2,-0.0 0.743 137.4 54.1 83.4 26.9 5.2 27.6 8.1 46 46 A T S S+ 0 0 81 -6,-0.1 3,-0.2 0, 0.0 -6,-0.1 0.358 109.7 29.6-149.3 -57.8 4.4 27.1 4.4 47 47 A K S S+ 0 0 114 -7,-0.2 2,-2.0 1,-0.2 -6,-0.1 0.969 114.4 56.1 -78.5 -60.3 0.8 28.0 3.5 48 48 A P S S+ 0 0 85 0, 0.0 2,-0.5 0, 0.0 -3,-0.3 -0.487 75.3 171.0 -76.4 76.9 0.0 30.8 6.1 49 49 A V - 0 0 77 -2,-2.0 2,-0.5 -3,-0.2 -2,-0.0 -0.796 59.3 -60.0 -94.5 126.2 2.9 33.1 5.2 50 50 A Q S S- 0 0 185 -2,-0.5 2,-0.3 1,-0.1 0, 0.0 -0.128 110.7 -30.3 41.8 -91.0 2.9 36.5 6.9 51 51 A T 0 0 124 -2,-0.5 -1,-0.1 1,-0.1 0, 0.0 -0.895 360.0 360.0-159.8 125.4 -0.4 37.7 5.5 52 52 A S 0 0 188 -2,-0.3 -2,-0.1 0, 0.0 -1,-0.1 0.447 360.0 360.0-149.6 360.0 -2.3 37.0 2.2