==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 24-SEP-10 2XS2 . COMPND 2 MOLECULE: DELETED IN AZOOSPERMIA-LIKE; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.T.JENKINS,T.A.EDWARDS . 87 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6231.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 64.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 29.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 32 A L 0 0 139 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.3 19.8 50.9 8.7 2 33 A P - 0 0 143 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.190 360.0-172.8 -47.0 139.1 16.4 49.5 7.6 3 34 A E + 0 0 73 1,-0.0 82,-0.1 2,-0.0 0, 0.0 -0.863 30.9 56.5-129.6 158.8 14.0 52.0 6.3 4 35 A G - 0 0 37 -2,-0.3 81,-0.3 79,-0.1 2,-0.1 0.610 66.1-102.4 90.8 122.9 10.4 52.1 5.2 5 36 A K E -A 84 0A 57 79,-1.5 79,-2.8 78,-0.1 2,-0.5 -0.409 33.7-115.5 -78.0 143.3 7.0 51.2 6.7 6 37 A I E -A 83 0A 121 77,-0.2 77,-0.2 -2,-0.1 -1,-0.1 -0.717 30.1-136.0 -80.3 123.8 5.2 48.0 5.7 7 38 A M E > - 0 0 49 75,-3.0 3,-1.0 -2,-0.5 75,-0.5 -0.730 19.5-124.7 -85.8 121.6 2.0 48.9 4.0 8 39 A P E 3 S+ 0 0 100 0, 0.0 48,-0.2 0, 0.0 3,-0.1 -0.269 85.3 7.3 -65.6 150.0 -1.0 46.9 5.1 9 40 A N E 3 S+ 0 0 33 51,-0.3 47,-2.1 1,-0.2 2,-0.4 0.757 103.8 113.6 57.3 34.3 -3.1 45.0 2.7 10 41 A T E < - B 0 55A 24 -3,-1.0 72,-0.9 45,-0.2 2,-0.4 -0.985 49.7-156.9-138.0 143.2 -0.8 45.8 -0.2 11 42 A V E -AB 81 54A 0 43,-2.5 43,-2.5 -2,-0.4 2,-0.4 -0.982 15.7-133.5-123.6 128.6 1.5 43.5 -2.3 12 43 A F E -AB 80 53A 63 68,-2.7 68,-1.8 -2,-0.4 2,-0.5 -0.668 21.6-164.2 -74.0 134.0 4.6 44.5 -4.2 13 44 A V E +AB 79 52A 1 39,-3.1 39,-2.4 -2,-0.4 3,-0.3 -0.948 14.3 172.5-125.3 108.0 4.5 43.0 -7.7 14 45 A G E +AB 78 51A 2 64,-3.2 64,-2.5 -2,-0.5 37,-0.2 -0.536 51.2 53.9-109.9 174.8 7.8 43.0 -9.5 15 46 A G + 0 0 32 35,-0.6 2,-0.5 1,-0.2 36,-0.2 0.779 64.3 169.6 70.7 27.6 9.0 41.5 -12.8 16 47 A I - 0 0 25 34,-2.4 -1,-0.2 -3,-0.3 2,-0.2 -0.622 21.2-151.9 -75.2 119.7 6.1 43.1 -14.7 17 48 A D > - 0 0 48 -2,-0.5 3,-1.7 -3,-0.1 33,-0.0 -0.568 24.3-113.8 -95.8 155.7 7.0 42.6 -18.4 18 49 A V T 3 S+ 0 0 144 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.794 115.5 61.4 -61.8 -24.5 6.1 44.8 -21.3 19 50 A R T 3 S+ 0 0 177 54,-0.1 -1,-0.3 53,-0.1 2,-0.1 0.606 94.7 83.3 -76.9 -11.5 3.8 42.0 -22.7 20 51 A M < - 0 0 18 -3,-1.7 2,-0.3 52,-0.1 3,-0.0 -0.405 65.2-151.3 -88.8 169.5 1.7 42.1 -19.5 21 52 A D > - 0 0 91 -2,-0.1 4,-1.1 1,-0.1 3,-0.2 -0.951 25.6-120.2-138.6 156.7 -1.2 44.4 -18.7 22 53 A E H > S+ 0 0 64 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.883 108.2 62.2 -62.2 -38.9 -2.8 45.9 -15.5 23 54 A T H > S+ 0 0 81 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.887 101.9 47.3 -61.2 -41.4 -6.1 44.3 -16.3 24 55 A E H > S+ 0 0 45 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.847 113.7 49.3 -72.4 -30.5 -4.9 40.7 -16.1 25 56 A I H X S+ 0 0 1 -4,-1.1 4,-2.5 2,-0.2 -2,-0.2 0.949 112.5 47.9 -68.5 -47.8 -3.1 41.5 -12.8 26 57 A R H X S+ 0 0 92 -4,-2.9 4,-1.1 1,-0.2 -2,-0.2 0.905 112.3 48.8 -52.1 -49.0 -6.3 43.1 -11.4 27 58 A S H < S+ 0 0 93 -4,-2.5 -1,-0.2 -5,-0.2 4,-0.2 0.861 112.7 48.6 -67.8 -36.5 -8.5 40.2 -12.5 28 59 A F H >< S+ 0 0 61 -4,-1.6 3,-2.0 1,-0.2 -1,-0.2 0.942 107.8 52.1 -67.4 -47.4 -6.1 37.7 -11.0 29 60 A F H >< S+ 0 0 0 -4,-2.5 3,-2.1 1,-0.3 4,-0.4 0.685 87.6 82.5 -71.0 -13.7 -5.8 39.4 -7.6 30 61 A A G >< S+ 0 0 57 -4,-1.1 3,-0.7 1,-0.3 -1,-0.3 0.711 74.7 76.0 -58.6 -20.0 -9.6 39.5 -7.2 31 62 A R G < S+ 0 0 183 -3,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.763 99.6 43.5 -61.7 -21.5 -9.3 35.9 -6.0 32 63 A Y G < S- 0 0 52 -3,-2.1 2,-0.3 1,-0.2 -1,-0.2 0.521 126.6 -64.9 -99.4 -11.3 -8.0 37.4 -2.7 33 64 A G S < S- 0 0 23 -3,-0.7 2,-0.8 -4,-0.4 -1,-0.2 -0.996 76.3 -29.2 157.7-167.6 -10.4 40.3 -2.3 34 65 A S - 0 0 71 -2,-0.3 23,-2.7 -3,-0.1 24,-0.5 -0.810 62.0-136.2 -90.2 106.5 -11.8 43.6 -3.6 35 66 A V E -C 56 0A 10 -2,-0.8 21,-0.3 21,-0.2 3,-0.1 -0.536 21.8-175.5 -67.3 125.2 -8.8 45.2 -5.3 36 67 A K E - 0 0 117 19,-2.7 2,-0.3 -2,-0.4 20,-0.2 0.930 66.8 -6.4 -82.5 -50.7 -8.5 48.9 -4.5 37 68 A E E -C 55 0A 89 18,-1.0 18,-2.4 2,-0.1 2,-0.5 -0.998 41.1-159.3-148.9 139.7 -5.6 49.8 -6.9 38 69 A V E -C 54 0A 18 -2,-0.3 2,-0.6 16,-0.2 16,-0.2 -0.976 31.7-175.4-110.7 107.1 -3.2 48.2 -9.3 39 70 A K E -C 53 0A 81 14,-2.7 14,-2.0 -2,-0.5 2,-0.4 -0.915 12.3-162.0-116.5 108.0 -0.5 50.9 -9.4 40 71 A I E -C 52 0A 54 -2,-0.6 2,-0.4 12,-0.3 12,-0.3 -0.741 22.0-126.9 -88.4 131.3 2.4 50.5 -11.8 41 72 A I E - 0 0 29 10,-2.7 8,-3.0 -2,-0.4 10,-0.4 -0.657 32.5-179.4 -82.7 130.0 5.4 52.7 -11.0 42 73 A T E -C 48 0A 72 -2,-0.4 6,-0.2 6,-0.3 2,-0.1 -0.896 25.8-115.1-121.9 160.1 6.7 54.8 -13.9 43 74 A D > - 0 0 60 4,-2.6 3,-2.2 -2,-0.3 6,-0.0 -0.224 49.7 -85.5 -80.5-177.5 9.5 57.3 -14.4 44 75 A R T 3 S+ 0 0 246 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.669 129.3 55.1 -69.9 -16.0 8.9 61.0 -15.1 45 76 A T T 3 S- 0 0 108 2,-0.1 -1,-0.3 3,-0.0 3,-0.1 0.263 122.5-102.9 -96.9 12.0 8.6 60.3 -18.9 46 77 A G S < S+ 0 0 53 -3,-2.2 2,-0.4 1,-0.3 -2,-0.1 0.538 73.4 144.9 83.4 5.3 5.9 57.6 -18.3 47 78 A V - 0 0 86 1,-0.1 -4,-2.6 2,-0.0 -1,-0.3 -0.658 52.8-115.1 -84.3 124.2 8.3 54.6 -18.8 48 79 A S E - C 0 42A 62 -2,-0.4 -6,-0.3 -6,-0.2 -1,-0.1 -0.255 10.4-151.0 -55.7 138.6 7.4 51.6 -16.6 49 80 A K E - 0 0 116 -8,-3.0 -1,-0.1 2,-0.3 -7,-0.1 0.406 46.5-111.1 -86.4 -1.6 9.9 50.7 -13.9 50 81 A G E S+ 0 0 19 -9,-0.4 -34,-2.4 1,-0.2 -35,-0.6 0.619 86.8 77.5 83.5 16.3 8.7 47.1 -14.2 51 82 A Y E +B 14 0A 78 -10,-0.4 -10,-2.7 -37,-0.2 -2,-0.3 -0.969 47.0 161.7-150.6 164.4 7.0 46.9 -10.8 52 83 A G E -BC 13 40A 1 -39,-2.4 -39,-3.1 -2,-0.3 2,-0.4 -0.878 29.9-101.5-164.9-171.6 3.9 48.0 -9.0 53 84 A F E -BC 12 39A 42 -14,-2.0 -14,-2.7 -2,-0.3 2,-0.5 -0.999 12.1-157.3-136.8 135.0 1.5 47.5 -6.1 54 85 A V E -BC 11 38A 1 -43,-2.5 -43,-2.5 -2,-0.4 2,-0.3 -0.949 19.7-173.0-110.8 120.5 -1.8 45.8 -5.6 55 86 A S E -BC 10 37A 13 -18,-2.4 -19,-2.7 -2,-0.5 -18,-1.0 -0.849 7.4-147.3-115.1 159.7 -3.9 47.0 -2.7 56 87 A F E - C 0 35A 10 -47,-2.1 -21,-0.2 -2,-0.3 4,-0.1 -0.897 20.4-146.3-126.6 147.9 -7.1 45.7 -1.2 57 88 A Y S S+ 0 0 155 -23,-2.7 2,-0.1 -2,-0.3 -22,-0.1 0.826 90.9 59.4 -75.0 -37.2 -10.2 47.1 0.6 58 89 A N S S- 0 0 56 -24,-0.5 2,-0.4 1,-0.1 -2,-0.2 -0.479 101.9 -92.7 -85.0 161.0 -10.5 44.0 2.6 59 90 A D - 0 0 135 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.630 49.2-176.3 -69.4 125.9 -7.9 42.6 5.0 60 91 A V - 0 0 23 -2,-0.4 2,-1.1 -4,-0.1 -51,-0.3 -0.876 34.4-115.9-118.9 159.0 -5.7 40.1 3.2 61 92 A D > - 0 0 100 -2,-0.3 4,-2.5 1,-0.2 3,-0.4 -0.793 30.3-173.5 -93.6 99.0 -2.9 37.8 4.5 62 93 A V H > S+ 0 0 22 -2,-1.1 4,-2.6 1,-0.2 -1,-0.2 0.855 80.7 60.1 -60.5 -41.9 0.0 39.3 2.5 63 94 A Q H 4 S+ 0 0 129 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.909 109.4 42.9 -55.1 -44.2 2.4 36.6 3.7 64 95 A K H >4 S+ 0 0 119 -3,-0.4 3,-1.3 1,-0.2 4,-0.3 0.931 111.6 53.8 -68.3 -42.8 0.2 34.0 2.1 65 96 A I H >< S+ 0 0 4 -4,-2.5 3,-2.3 1,-0.3 -2,-0.2 0.907 101.8 58.6 -56.5 -43.9 -0.4 36.0 -1.1 66 97 A V T 3< S+ 0 0 36 -4,-2.6 13,-0.3 1,-0.3 -1,-0.3 0.665 94.9 65.9 -67.9 -10.7 3.4 36.4 -1.7 67 98 A E T < S+ 0 0 113 -3,-1.3 -1,-0.3 -4,-0.5 -2,-0.2 0.584 80.0 112.7 -75.3 -15.7 3.7 32.6 -1.7 68 99 A S < - 0 0 31 -3,-2.3 2,-0.8 -4,-0.3 11,-0.2 -0.336 65.4-139.4 -67.3 142.9 1.7 32.4 -4.9 69 100 A Q + 0 0 127 -2,-0.1 2,-0.6 9,-0.1 -1,-0.1 -0.887 31.7 175.7 -99.0 101.5 3.2 31.3 -8.2 70 101 A I - 0 0 2 -2,-0.8 7,-3.0 7,-0.3 2,-0.4 -0.956 5.2-174.7-116.0 115.4 1.6 33.8 -10.6 71 102 A N E +D 76 0B 101 -2,-0.6 2,-0.3 5,-0.2 5,-0.2 -0.902 9.2 172.9-112.3 140.2 2.7 33.7 -14.3 72 103 A F E > S-D 75 0B 31 3,-2.4 3,-1.9 -2,-0.4 -55,-0.1 -0.987 70.3 -6.3-136.8 138.6 1.8 35.9 -17.2 73 104 A H T 3 S- 0 0 97 -2,-0.3 -54,-0.1 1,-0.3 3,-0.1 0.849 129.8 -51.5 53.1 40.3 3.3 35.9 -20.7 74 105 A G T 3 S+ 0 0 80 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.535 117.9 103.4 77.7 10.1 6.0 33.4 -19.9 75 106 A K E < -D 72 0B 109 -3,-1.9 -3,-2.4 -58,-0.0 2,-0.5 -0.955 65.0-132.2-130.5 142.7 7.2 35.3 -16.8 76 107 A K E -D 71 0B 106 -2,-0.4 -5,-0.2 -5,-0.2 2,-0.1 -0.799 28.6-120.0 -95.3 126.8 6.7 34.7 -13.0 77 108 A L - 0 0 3 -7,-3.0 2,-0.7 -2,-0.5 -7,-0.3 -0.365 18.0-133.5 -64.9 143.6 5.7 37.6 -10.9 78 109 A K E -A 14 0A 137 -64,-2.5 -64,-3.2 -9,-0.1 2,-0.3 -0.873 31.0-167.4-103.4 106.6 8.1 38.6 -8.2 79 110 A L E +A 13 0A 34 -2,-0.7 -66,-0.2 -13,-0.3 -13,-0.0 -0.635 17.3 146.9-102.5 153.2 6.1 39.2 -5.0 80 111 A G E -A 12 0A 13 -68,-1.8 -68,-2.7 -2,-0.3 -17,-0.0 -0.989 52.5 -73.2-164.1 168.9 6.8 40.7 -1.7 81 112 A P E -A 11 0A 56 0, 0.0 2,-0.5 0, 0.0 -70,-0.2 -0.349 58.5-110.0 -60.8 150.8 5.4 42.7 1.2 82 113 A A E - 0 0 1 -72,-0.9 -75,-3.0 -75,-0.5 2,-0.4 -0.793 35.2-170.6 -91.8 129.6 5.0 46.4 0.2 83 114 A I E -A 6 0A 82 -2,-0.5 2,-0.6 -77,-0.2 -77,-0.2 -0.966 7.5-157.7-123.5 126.9 7.4 48.8 1.9 84 115 A R E -A 5 0A 152 -79,-2.8 -79,-1.5 -2,-0.4 2,-0.1 -0.950 10.0-167.7-108.7 113.4 7.1 52.7 1.5 85 116 A K 0 0 151 -2,-0.6 -82,-0.0 -81,-0.3 0, 0.0 -0.390 360.0 360.0 -82.2 171.2 10.2 54.7 2.1 86 117 A Q 0 0 154 -2,-0.1 -1,-0.2 0, 0.0 -83,-0.0 -0.306 360.0 360.0 -55.0 360.0 10.2 58.5 2.6 87 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 88 123 A H 0 0 307 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 5.9 66.3 -8.0