==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 24-SEP-10 2XS7 . COMPND 2 MOLECULE: DELETED IN AZOOSPERMIA-LIKE; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.T.JENKINS,T.A.EDWARDS . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5968.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 30.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 32 A L 0 0 213 0, 0.0 2,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 144.7 -12.5 -12.0 -21.8 2 33 A P - 0 0 106 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.506 360.0-134.9 -75.7 147.3 -12.5 -10.7 -19.2 3 34 A E + 0 0 121 83,-0.2 83,-2.1 -2,-0.1 2,-0.3 -0.498 40.3 153.0 -66.8 132.2 -14.6 -7.9 -20.6 4 35 A G E -A 85 0A 35 81,-0.3 2,-0.5 -2,-0.2 81,-0.2 -0.985 39.8-129.6-159.7 153.0 -13.4 -4.5 -19.5 5 36 A K E -A 84 0A 94 79,-2.4 79,-2.7 -2,-0.3 2,-0.5 -0.923 25.7-128.2-106.3 132.5 -13.4 -0.8 -20.7 6 37 A I E -A 83 0A 116 -2,-0.5 77,-0.2 77,-0.2 -2,-0.0 -0.683 24.7-137.0 -79.4 126.2 -10.1 1.0 -20.7 7 38 A M E > - 0 0 48 75,-3.1 3,-1.0 -2,-0.5 75,-0.4 -0.713 19.7-123.7 -88.4 121.5 -10.6 4.3 -18.7 8 39 A P E 3 S+ 0 0 86 0, 0.0 48,-0.1 0, 0.0 3,-0.1 -0.299 85.4 6.6 -68.9 150.8 -9.0 7.3 -20.4 9 40 A N E 3 S+ 0 0 34 51,-0.3 47,-2.0 1,-0.2 2,-0.4 0.736 103.1 116.0 57.7 32.1 -6.5 9.5 -18.6 10 41 A T E < - B 0 55A 21 -3,-1.0 72,-0.9 45,-0.2 2,-0.4 -0.977 48.1-158.6-133.5 142.5 -6.4 7.1 -15.7 11 42 A V E -AB 81 54A 0 43,-2.7 43,-2.4 -2,-0.4 2,-0.3 -0.983 15.1-135.0-123.2 126.1 -3.6 5.0 -14.3 12 43 A F E -AB 80 53A 61 68,-2.7 68,-1.7 -2,-0.4 2,-0.5 -0.666 21.7-166.2 -70.7 134.3 -3.9 1.9 -12.1 13 44 A V E +AB 79 52A 1 39,-3.0 39,-2.9 -2,-0.3 2,-0.2 -0.976 11.3 173.1-127.0 116.0 -1.4 2.0 -9.2 14 45 A G E +AB 78 51A 4 64,-2.7 64,-2.3 -2,-0.5 37,-0.2 -0.706 53.9 55.7-116.7 175.1 -0.8 -1.2 -7.2 15 46 A G + 0 0 45 35,-1.0 2,-0.7 1,-0.2 36,-0.2 0.796 66.6 165.2 72.4 28.3 1.6 -2.1 -4.4 16 47 A I - 0 0 10 34,-2.6 -1,-0.2 -3,-0.2 2,-0.1 -0.680 26.3-146.6 -80.6 114.5 0.3 0.9 -2.4 17 48 A D > - 0 0 55 -2,-0.7 3,-2.1 -3,-0.1 33,-0.1 -0.332 25.1-101.7 -82.3 168.5 1.6 0.3 1.1 18 49 A V T 3 S+ 0 0 137 1,-0.3 -1,-0.1 -2,-0.1 -2,-0.0 0.661 119.8 54.7 -66.9 -17.9 -0.3 1.3 4.3 19 50 A R T 3 S+ 0 0 204 2,-0.1 2,-0.7 1,-0.1 -1,-0.3 0.330 87.8 91.5 -96.5 8.5 1.9 4.4 4.8 20 51 A M < - 0 0 8 -3,-2.1 2,-0.1 4,-0.0 -1,-0.1 -0.882 61.4-168.7-107.0 111.4 1.2 5.8 1.3 21 52 A D > - 0 0 90 -2,-0.7 4,-1.9 1,-0.1 5,-0.2 -0.394 36.1-102.7 -95.5 171.6 -1.8 8.1 1.3 22 53 A E H > S+ 0 0 88 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.878 119.2 54.9 -60.0 -36.8 -3.8 9.7 -1.6 23 54 A T H > S+ 0 0 93 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.906 106.0 50.7 -66.5 -37.7 -2.1 13.1 -1.1 24 55 A E H > S+ 0 0 70 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.927 112.3 47.5 -64.7 -41.9 1.4 11.6 -1.5 25 56 A I H X S+ 0 0 1 -4,-1.9 4,-2.5 1,-0.2 -2,-0.2 0.941 111.0 51.4 -63.9 -44.7 0.4 9.8 -4.7 26 57 A R H X S+ 0 0 96 -4,-2.7 4,-1.4 1,-0.2 -2,-0.2 0.918 106.7 55.2 -56.4 -44.1 -1.2 13.0 -6.1 27 58 A S H < S+ 0 0 82 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.878 111.0 44.0 -63.4 -37.7 2.0 14.9 -5.3 28 59 A F H >< S+ 0 0 59 -4,-1.7 3,-1.7 1,-0.2 -1,-0.2 0.955 112.9 49.1 -67.7 -50.6 4.1 12.6 -7.4 29 60 A F H >< S+ 0 0 0 -4,-2.5 3,-2.2 1,-0.3 4,-0.4 0.624 86.1 87.5 -70.7 -11.8 1.8 12.2 -10.3 30 61 A A G >< S+ 0 0 56 -4,-1.4 3,-0.7 1,-0.3 -1,-0.3 0.700 73.2 75.1 -58.0 -20.3 1.4 16.0 -10.6 31 62 A R G < S+ 0 0 173 -3,-1.7 -1,-0.3 1,-0.2 -2,-0.1 0.761 99.9 43.6 -61.9 -21.8 4.5 15.9 -12.8 32 63 A Y G < S- 0 0 63 -3,-2.2 2,-0.3 1,-0.2 -1,-0.2 0.504 126.6 -53.6 -98.1 -11.0 2.2 14.4 -15.6 33 64 A G S < S- 0 0 21 -3,-0.7 2,-0.8 -4,-0.4 -1,-0.2 -0.991 75.4 -43.0 162.4-176.2 -0.7 16.7 -15.3 34 65 A S - 0 0 73 -2,-0.3 23,-3.0 -3,-0.1 24,-0.5 -0.829 61.8-134.3 -90.7 108.9 -3.4 18.2 -13.2 35 66 A V E -C 56 0A 6 -2,-0.8 21,-0.3 21,-0.2 3,-0.1 -0.538 22.3-173.6 -71.9 124.6 -4.6 15.3 -11.1 36 67 A K E - 0 0 103 19,-2.3 2,-0.3 -2,-0.4 20,-0.2 0.896 66.7 -7.9 -81.4 -48.4 -8.4 15.0 -10.9 37 68 A E E -C 55 0A 95 18,-1.2 18,-2.6 2,-0.0 2,-0.5 -0.993 46.2-161.9-152.9 139.7 -8.7 12.2 -8.3 38 69 A V E -C 54 0A 10 -2,-0.3 2,-0.5 16,-0.2 16,-0.2 -1.000 21.8-177.4-114.8 126.8 -6.6 9.7 -6.5 39 70 A K E -C 53 0A 106 14,-2.4 14,-2.1 -2,-0.5 2,-0.5 -0.952 15.1-160.4-129.0 113.2 -8.7 6.9 -5.1 40 71 A I E -C 52 0A 22 -2,-0.5 2,-0.4 12,-0.3 12,-0.3 -0.783 29.6-123.2 -85.1 127.1 -7.2 4.2 -3.0 41 72 A I E + 0 0 38 10,-2.7 8,-3.3 -2,-0.5 10,-0.4 -0.583 38.4 175.4 -77.9 123.2 -9.6 1.2 -3.1 42 73 A T E -C 48 0A 68 -2,-0.4 6,-0.3 6,-0.3 2,-0.1 -0.900 31.2-114.7-122.8 155.3 -10.7 0.2 0.4 43 74 A D > - 0 0 62 4,-2.6 3,-2.4 -2,-0.3 4,-0.1 -0.306 52.0 -86.1 -73.3 175.2 -13.2 -2.4 1.7 44 75 A R T 3 S+ 0 0 116 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.651 130.7 54.8 -64.1 -13.8 -16.3 -1.0 3.6 45 76 A T T 3 S- 0 0 118 2,-0.1 -1,-0.3 3,-0.0 3,-0.1 0.276 122.4-105.2-101.8 9.0 -14.3 -0.9 6.9 46 77 A G < + 0 0 51 -3,-2.4 2,-0.7 1,-0.3 -2,-0.1 0.683 69.5 148.7 75.1 23.2 -11.6 1.3 5.3 47 78 A V - 0 0 87 -4,-0.1 -4,-2.6 2,-0.0 -1,-0.3 -0.784 49.3-123.5 -83.6 118.9 -9.0 -1.4 5.0 48 79 A S E - C 0 42A 50 -2,-0.7 -6,-0.3 -6,-0.3 -30,-0.1 -0.359 7.5-147.8 -61.6 143.8 -7.0 -0.6 1.9 49 80 A K E - 0 0 120 -8,-3.3 -1,-0.1 2,-0.3 -7,-0.1 0.392 45.9-111.9 -88.9 -0.7 -6.9 -3.2 -0.8 50 81 A G E S+ 0 0 21 -9,-0.4 -34,-2.6 1,-0.2 -35,-1.0 0.610 87.3 79.9 84.4 11.4 -3.4 -2.0 -1.7 51 82 A Y E +B 14 0A 79 -10,-0.4 -10,-2.7 -37,-0.2 -2,-0.3 -0.972 47.7 160.5-144.1 162.0 -4.3 -0.5 -5.1 52 83 A G E -BC 13 40A 1 -39,-2.9 -39,-3.0 -2,-0.3 2,-0.4 -0.890 29.4-103.6-160.9-168.3 -5.9 2.7 -6.5 53 84 A F E -BC 12 39A 54 -14,-2.1 -14,-2.4 -2,-0.3 2,-0.5 -0.990 11.8-158.7-139.8 140.6 -6.4 4.9 -9.5 54 85 A V E -BC 11 38A 0 -43,-2.4 -43,-2.7 -2,-0.4 2,-0.3 -0.978 17.2-174.6-117.0 124.4 -5.0 8.3 -10.5 55 86 A S E -BC 10 37A 10 -18,-2.6 -19,-2.3 -2,-0.5 -18,-1.2 -0.877 8.2-148.9-120.4 155.3 -7.0 10.3 -13.1 56 87 A F E - C 0 35A 1 -47,-2.0 -21,-0.2 -2,-0.3 4,-0.1 -0.895 21.0-143.4-123.6 151.6 -6.2 13.5 -14.8 57 88 A Y S S+ 0 0 157 -23,-3.0 2,-0.1 -2,-0.3 -22,-0.1 0.865 91.2 61.7 -74.1 -39.2 -8.0 16.6 -16.1 58 89 A N S S- 0 0 58 -24,-0.5 2,-0.4 1,-0.1 -2,-0.2 -0.461 101.9 -95.8 -80.0 157.7 -5.5 16.8 -19.0 59 90 A D - 0 0 142 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.650 49.3-173.0 -69.7 131.0 -5.0 14.1 -21.7 60 91 A V - 0 0 24 -2,-0.4 2,-1.2 -4,-0.1 -51,-0.3 -0.859 33.0-114.9-121.9 156.8 -2.0 12.0 -20.6 61 92 A D > - 0 0 93 -2,-0.3 4,-2.4 1,-0.2 3,-0.4 -0.786 30.3-172.2 -90.3 94.3 -0.2 9.3 -22.4 62 93 A V H > S+ 0 0 23 -2,-1.2 4,-2.6 1,-0.2 -1,-0.2 0.874 81.6 59.0 -55.2 -39.3 -1.1 6.4 -20.1 63 94 A Q H 4 S+ 0 0 129 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.906 109.4 42.9 -60.3 -42.0 1.3 4.1 -22.0 64 95 A K H >4 S+ 0 0 119 -3,-0.4 3,-1.2 2,-0.2 4,-0.4 0.924 112.6 52.6 -69.4 -43.5 4.3 6.4 -21.2 65 96 A I H >< S+ 0 0 7 -4,-2.4 3,-2.1 1,-0.3 -2,-0.2 0.911 103.4 57.5 -58.8 -39.5 3.2 6.9 -17.6 66 97 A V T 3< S+ 0 0 34 -4,-2.6 13,-0.3 1,-0.3 -1,-0.3 0.669 95.7 65.0 -72.7 -13.0 3.0 3.2 -16.9 67 98 A E T < S+ 0 0 107 -3,-1.2 -1,-0.3 -4,-0.5 -2,-0.2 0.623 79.8 113.0 -72.3 -15.2 6.7 2.8 -17.9 68 99 A S < - 0 0 24 -3,-2.1 2,-0.8 -4,-0.4 11,-0.2 -0.303 64.1-144.0 -65.1 141.4 7.6 4.9 -15.0 69 100 A Q - 0 0 126 9,-0.1 2,-0.5 7,-0.1 -1,-0.1 -0.862 25.3-176.3-108.6 96.6 9.5 3.2 -12.2 70 101 A I + 0 0 3 -2,-0.8 7,-3.0 7,-0.3 2,-0.4 -0.848 9.1 173.6-106.5 123.9 8.2 4.8 -9.1 71 102 A N B +D 76 0B 121 -2,-0.5 5,-0.2 5,-0.2 -2,-0.0 -0.814 15.0 148.4-135.7 94.3 9.7 3.9 -5.8 72 103 A F S S+ 0 0 52 3,-0.5 -1,-0.1 -2,-0.4 4,-0.1 0.891 80.8 25.5 -85.8 -47.7 8.6 5.8 -2.6 73 104 A H S S- 0 0 83 2,-0.5 -1,-0.1 -53,-0.0 3,-0.1 0.013 126.1 -76.1-122.2 26.5 8.8 3.3 0.2 74 105 A G S S+ 0 0 76 1,-0.2 2,-0.4 0, 0.0 -3,-0.1 0.361 107.2 83.1 101.4 -1.1 11.4 0.9 -1.1 75 106 A K S S- 0 0 65 -60,-0.1 -3,-0.5 -5,-0.0 -2,-0.5 -0.992 80.4-110.5-133.8 144.2 9.3 -1.0 -3.7 76 107 A K B -D 71 0B 114 -2,-0.4 -5,-0.2 -5,-0.2 2,-0.1 -0.495 36.5-119.7 -71.5 130.9 8.4 -0.2 -7.2 77 108 A L - 0 0 4 -7,-3.0 2,-0.8 -2,-0.3 -7,-0.3 -0.453 23.0-122.2 -67.1 150.2 4.8 0.6 -7.7 78 109 A K E -A 14 0A 145 -64,-2.3 -64,-2.7 -2,-0.1 2,-0.2 -0.798 36.5-171.2-100.5 108.0 2.9 -1.6 -10.0 79 110 A L E +A 13 0A 36 -2,-0.8 -66,-0.2 -13,-0.3 -13,-0.0 -0.610 14.5 148.9-105.5 150.5 1.4 0.4 -12.8 80 111 A G E -A 12 0A 13 -68,-1.7 -68,-2.7 -2,-0.2 -13,-0.0 -0.981 51.5 -75.1-160.7 168.9 -1.1 -0.3 -15.6 81 112 A P E -A 11 0A 52 0, 0.0 2,-0.5 0, 0.0 -70,-0.2 -0.354 58.4-109.7 -56.8 149.2 -3.8 1.1 -17.8 82 113 A A E - 0 0 2 -72,-0.9 -75,-3.1 -75,-0.4 2,-0.4 -0.786 39.3-175.8 -91.0 127.2 -7.0 1.4 -15.8 83 114 A I E -A 6 0A 89 -2,-0.5 2,-0.7 -77,-0.2 -77,-0.2 -0.977 20.3-150.1-125.2 132.9 -9.8 -1.0 -16.7 84 115 A R E -A 5 0A 164 -79,-2.7 -79,-2.4 -2,-0.4 2,-0.1 -0.898 26.7-132.7 -97.0 116.3 -13.3 -1.1 -15.4 85 116 A K E A 4 0A 175 -2,-0.7 -81,-0.3 -81,-0.2 -82,-0.0 -0.491 360.0 360.0 -73.0 140.7 -14.4 -4.8 -15.6 86 117 A Q 0 0 149 -83,-2.1 -83,-0.2 -2,-0.1 -1,-0.1 -0.504 360.0 360.0-130.4 360.0 -17.9 -5.0 -17.2