==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-SEP-10 2XSF . COMPND 2 MOLECULE: DELETED IN AZOOSPERMIA-LIKE; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.T.JENKINS,T.A.EDWARDS . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5558.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 27.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 35 A G 0 0 105 0, 0.0 2,-0.4 0, 0.0 79,-0.0 0.000 360.0 360.0 360.0 166.4 35.8 -27.0 8.4 2 36 A K - 0 0 51 1,-0.0 79,-2.3 0, 0.0 2,-0.4 -0.779 360.0-117.4-103.3 136.6 37.7 -25.4 5.5 3 37 A I E -A 80 0A 104 -2,-0.4 77,-0.2 77,-0.2 -1,-0.0 -0.518 31.9-133.2 -69.1 121.0 37.1 -21.9 4.0 4 38 A M E > - 0 0 58 75,-3.5 3,-1.2 -2,-0.4 75,-0.4 -0.666 18.1-133.6 -82.4 114.8 36.0 -22.3 0.4 5 39 A P E 3 S+ 0 0 96 0, 0.0 48,-0.1 0, 0.0 3,-0.1 -0.380 83.6 13.8 -68.8 148.8 37.9 -20.0 -1.8 6 40 A N E 3 S+ 0 0 29 51,-0.5 47,-2.5 1,-0.2 2,-0.4 0.592 102.4 106.5 66.7 19.0 35.9 -18.0 -4.4 7 41 A T E < - B 0 52A 12 -3,-1.2 72,-0.7 45,-0.2 2,-0.5 -0.970 50.5-160.5-125.2 139.0 32.5 -18.7 -2.7 8 42 A V E -AB 78 51A 2 43,-3.0 43,-2.3 -2,-0.4 2,-0.3 -0.972 15.5-133.9-121.6 132.1 30.4 -16.3 -0.8 9 43 A F E -AB 77 50A 63 68,-2.6 68,-1.8 -2,-0.5 2,-0.5 -0.629 20.7-159.4 -73.9 137.2 27.7 -17.1 1.7 10 44 A V E -AB 76 49A 1 39,-3.2 39,-1.9 -2,-0.3 3,-0.3 -0.927 10.9-175.8-125.6 105.1 24.6 -14.9 1.1 11 45 A G E +AB 75 48A 7 64,-3.2 64,-2.4 -2,-0.5 37,-0.2 -0.634 59.2 34.5 -94.4 154.8 22.1 -14.6 4.0 12 46 A G + 0 0 42 35,-1.1 2,-0.3 -2,-0.2 36,-0.2 0.745 69.1 175.9 82.2 26.5 18.8 -12.8 4.1 13 47 A I - 0 0 11 34,-2.2 -1,-0.2 -3,-0.3 2,-0.1 -0.481 29.6-124.1 -70.6 123.6 17.7 -13.5 0.6 14 48 A D > - 0 0 98 -2,-0.3 3,-1.3 58,-0.2 -1,-0.1 -0.359 15.6-119.0 -67.5 147.1 14.2 -12.2 -0.1 15 49 A V T 3 S+ 0 0 137 1,-0.3 -1,-0.1 -2,-0.1 30,-0.1 0.780 115.6 57.3 -56.3 -27.0 11.5 -14.6 -1.3 16 50 A R T 3 S+ 0 0 77 2,-0.1 2,-0.4 0, 0.0 -1,-0.3 0.689 86.3 92.3 -78.1 -22.6 11.3 -12.3 -4.4 17 51 A M < - 0 0 27 -3,-1.3 2,-0.2 4,-0.1 -4,-0.0 -0.593 61.5-167.5 -76.4 129.4 14.9 -12.6 -5.3 18 52 A D > - 0 0 89 -2,-0.4 4,-2.4 1,-0.1 5,-0.2 -0.620 37.8 -95.7-114.5 177.1 15.7 -15.4 -7.7 19 53 A E H > S+ 0 0 84 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.877 123.3 51.9 -57.9 -39.2 18.7 -17.3 -9.0 20 54 A T H > S+ 0 0 91 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.895 108.8 48.6 -66.5 -42.7 18.9 -15.0 -12.1 21 55 A E H > S+ 0 0 100 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.888 114.4 47.0 -63.6 -40.1 18.7 -11.8 -10.0 22 56 A I H X S+ 0 0 4 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.932 113.1 48.2 -65.7 -47.6 21.5 -13.1 -7.8 23 57 A R H X S+ 0 0 83 -4,-2.9 4,-1.2 1,-0.2 -2,-0.2 0.924 112.8 49.6 -54.5 -47.0 23.6 -14.2 -10.7 24 58 A S H < S+ 0 0 79 -4,-2.7 4,-0.2 1,-0.2 3,-0.2 0.900 112.8 46.2 -62.8 -43.4 23.1 -10.8 -12.4 25 59 A F H >< S+ 0 0 77 -4,-2.3 3,-1.8 1,-0.2 -1,-0.2 0.949 111.9 48.5 -64.4 -50.0 24.0 -8.9 -9.3 26 60 A F H >X S+ 0 0 3 -4,-2.7 3,-2.2 1,-0.3 4,-0.6 0.658 88.3 83.9 -73.5 -9.6 27.2 -10.9 -8.4 27 61 A A G >< S+ 0 0 56 -4,-1.2 3,-0.5 1,-0.3 -1,-0.3 0.704 76.9 72.9 -60.0 -21.4 28.4 -10.6 -12.0 28 62 A R G <4 S+ 0 0 168 -3,-1.8 -1,-0.3 -4,-0.2 -2,-0.2 0.700 100.3 43.7 -68.0 -17.5 29.8 -7.3 -10.9 29 63 A Y G <4 S- 0 0 89 -3,-2.2 2,-0.3 1,-0.4 -1,-0.2 0.530 128.0 -56.8-103.2 -10.3 32.5 -9.1 -8.9 30 64 A G S << S- 0 0 18 -4,-0.6 2,-0.6 -3,-0.5 -1,-0.4 -0.933 78.2 -37.5 155.3-179.7 33.5 -11.7 -11.4 31 65 A S - 0 0 79 -2,-0.3 23,-2.8 -3,-0.1 24,-0.5 -0.623 62.0-135.9 -76.5 116.2 32.3 -14.6 -13.6 32 66 A V E +C 53 0A 20 -2,-0.6 21,-0.3 21,-0.2 3,-0.1 -0.586 25.8 178.5 -82.0 128.9 29.7 -16.4 -11.6 33 67 A K E + 0 0 114 19,-2.6 2,-0.4 -2,-0.4 20,-0.2 0.889 64.2 3.7 -92.2 -57.9 29.9 -20.2 -11.7 34 68 A E E -C 52 0A 105 18,-1.1 18,-2.8 2,-0.0 2,-0.5 -0.996 49.8-165.5-136.5 142.0 27.1 -21.4 -9.4 35 69 A V E -C 51 0A 6 -2,-0.4 2,-0.5 16,-0.2 16,-0.2 -0.995 15.0-176.9-119.0 122.2 24.2 -19.9 -7.5 36 70 A K E -C 50 0A 115 14,-3.0 14,-2.4 -2,-0.5 2,-0.6 -0.973 11.7-165.2-121.0 119.2 22.6 -22.2 -4.9 37 71 A I E -C 49 0A 41 -2,-0.5 2,-0.3 12,-0.2 12,-0.3 -0.911 28.1-129.0 -96.9 123.2 19.6 -21.0 -2.9 38 72 A I E - 0 0 30 10,-2.5 8,-2.8 -2,-0.6 10,-0.5 -0.579 32.5-172.4 -77.1 131.3 19.2 -23.5 -0.0 39 73 A T E -C 45 0A 65 -2,-0.3 6,-0.2 6,-0.3 -1,-0.0 -0.871 21.0-115.0-124.6 158.1 15.7 -24.8 0.2 40 74 A D > - 0 0 61 4,-2.7 3,-2.4 -2,-0.3 -1,-0.1 -0.095 53.4 -77.9 -74.6-177.5 13.7 -26.9 2.6 41 75 A R T 3 S+ 0 0 249 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.628 133.7 52.8 -65.0 -11.6 12.3 -30.4 1.8 42 76 A T T 3 S- 0 0 102 2,-0.2 -1,-0.3 3,-0.0 3,-0.1 0.410 119.9-107.9-100.2 1.0 9.4 -28.7 -0.1 43 77 A G S < S+ 0 0 51 -3,-2.4 2,-0.4 1,-0.3 -2,-0.1 0.639 73.8 139.3 81.2 17.3 11.8 -26.6 -2.3 44 78 A V - 0 0 81 1,-0.1 -4,-2.7 2,-0.0 -1,-0.3 -0.777 62.0 -98.5 -91.2 135.9 10.9 -23.3 -0.5 45 79 A S E - C 0 39A 43 -2,-0.4 -6,-0.3 -6,-0.2 -1,-0.1 -0.235 18.1-153.8 -52.7 134.7 13.9 -21.0 0.2 46 80 A K E - 0 0 117 -8,-2.8 -1,-0.2 2,-0.3 -7,-0.1 0.380 54.1-102.4 -85.4 0.6 15.4 -21.1 3.7 47 81 A G E S+ 0 0 21 -9,-0.4 -34,-2.2 1,-0.2 -35,-1.1 0.533 91.8 71.1 92.6 9.2 16.5 -17.5 3.1 48 82 A Y E +B 11 0A 80 -10,-0.5 -10,-2.5 -37,-0.2 -2,-0.3 -0.955 46.2 153.1-148.7 168.9 20.2 -18.1 2.3 49 83 A G E -BC 10 37A 1 -39,-1.9 -39,-3.2 -2,-0.3 2,-0.4 -0.929 32.9 -97.8-175.1-168.6 22.5 -19.6 -0.3 50 84 A F E -BC 9 36A 63 -14,-2.4 -14,-3.0 -2,-0.3 2,-0.5 -0.980 14.8-158.8-138.6 144.2 26.0 -19.5 -1.9 51 85 A V E -BC 8 35A 2 -43,-2.3 -43,-3.0 -2,-0.4 2,-0.3 -0.995 13.4-167.8-124.4 125.5 27.5 -17.9 -4.9 52 86 A S E -BC 7 34A 18 -18,-2.8 -19,-2.6 -2,-0.5 -18,-1.1 -0.868 7.3-146.8-112.4 151.9 30.7 -19.3 -6.4 53 87 A F E - C 0 32A 9 -47,-2.5 -21,-0.2 -2,-0.3 4,-0.1 -0.829 15.8-139.3-113.6 153.7 33.0 -17.7 -9.0 54 88 A Y S S+ 0 0 160 -23,-2.8 2,-0.1 -2,-0.3 -22,-0.1 0.888 88.5 51.3 -72.0 -38.5 35.1 -19.2 -11.7 55 89 A N S S- 0 0 63 -24,-0.5 2,-0.6 1,-0.1 -2,-0.2 -0.445 104.9 -80.4 -98.3 166.0 37.9 -16.9 -11.1 56 90 A D + 0 0 144 -2,-0.1 2,-0.4 2,-0.1 -1,-0.1 -0.575 54.1 178.5 -70.5 112.4 39.9 -15.8 -8.0 57 91 A V - 0 0 18 -2,-0.6 2,-1.8 -4,-0.1 -51,-0.5 -0.945 36.1-121.3-116.9 140.2 37.6 -13.3 -6.3 58 92 A D > + 0 0 102 -2,-0.4 4,-2.0 1,-0.2 5,-0.2 -0.607 38.9 172.9 -85.2 81.8 38.7 -11.7 -3.1 59 93 A V H > S+ 0 0 15 -2,-1.8 4,-2.9 1,-0.2 -1,-0.2 0.897 72.9 55.1 -62.2 -43.4 35.6 -12.9 -1.1 60 94 A Q H > S+ 0 0 72 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.903 107.3 50.6 -60.0 -38.8 37.0 -11.7 2.3 61 95 A K H > S+ 0 0 147 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.920 111.6 47.8 -64.1 -42.9 37.5 -8.1 0.9 62 96 A I H >< S+ 0 0 16 -4,-2.0 3,-0.9 2,-0.2 4,-0.3 0.961 113.0 48.5 -60.8 -48.0 33.9 -8.1 -0.4 63 97 A V H >< S+ 0 0 17 -4,-2.9 3,-1.5 1,-0.2 -2,-0.2 0.932 111.2 50.1 -56.9 -46.3 32.6 -9.4 2.9 64 98 A E H 3< S+ 0 0 137 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.648 97.8 69.5 -71.9 -12.6 34.5 -6.8 4.9 65 99 A S T << S+ 0 0 68 -4,-1.0 -1,-0.3 -3,-0.9 2,-0.2 0.522 72.3 110.2 -83.1 -5.1 33.2 -4.0 2.7 66 100 A Q < + 0 0 34 -3,-1.5 3,-0.1 -4,-0.3 9,-0.0 -0.544 32.2 163.5 -72.9 135.6 29.7 -4.3 4.0 67 101 A I + 0 0 168 -2,-0.2 2,-0.5 1,-0.2 -1,-0.2 0.482 58.1 64.8-123.5 -17.3 28.7 -1.3 6.2 68 102 A N + 0 0 78 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.957 46.0 169.2-118.7 116.9 24.9 -1.6 6.4 69 103 A F + 0 0 117 -2,-0.5 -1,-0.1 -3,-0.1 6,-0.0 0.045 25.9 145.0-114.9 23.3 23.5 -4.7 8.2 70 104 A H > - 0 0 114 1,-0.1 3,-1.3 4,-0.1 -2,-0.1 -0.156 67.0 -96.4 -54.2 157.5 19.8 -3.5 8.3 71 105 A G T 3 S+ 0 0 58 1,-0.3 -1,-0.1 4,-0.0 4,-0.1 0.800 119.7 52.7 -54.6 -40.4 17.3 -6.3 7.9 72 106 A K T 3 S+ 0 0 140 2,-0.1 -1,-0.3 -59,-0.0 -58,-0.2 0.744 89.6 96.0 -71.4 -21.9 16.6 -6.0 4.2 73 107 A K S < S- 0 0 88 -3,-1.3 2,-0.2 1,-0.1 -62,-0.0 -0.392 83.2-108.9 -73.7 142.7 20.3 -6.1 3.2 74 108 A L - 0 0 43 -2,-0.1 2,-0.8 1,-0.1 -62,-0.2 -0.518 28.8-135.9 -68.1 137.1 22.0 -9.3 2.0 75 109 A K E -A 11 0A 56 -64,-2.4 -64,-3.2 -2,-0.2 2,-0.3 -0.848 21.0-162.8-101.5 107.5 24.4 -10.6 4.6 76 110 A L E +A 10 0A 26 -2,-0.8 -66,-0.2 -66,-0.2 -10,-0.1 -0.597 19.2 153.6 -90.8 146.5 27.6 -11.8 3.0 77 111 A G E -A 9 0A 10 -68,-1.8 -68,-2.6 -2,-0.3 2,-0.1 -0.946 46.8 -76.6-156.4 174.5 30.1 -14.0 4.7 78 112 A P E -A 8 0A 47 0, 0.0 2,-0.6 0, 0.0 -70,-0.2 -0.420 43.7-123.7 -73.9 157.5 32.8 -16.6 4.0 79 113 A A E - 0 0 1 -72,-0.7 -75,-3.5 -75,-0.4 2,-0.5 -0.926 30.9-176.3-106.5 119.0 31.6 -20.0 3.0 80 114 A I E A 3 0A 99 -2,-0.6 -77,-0.2 -77,-0.2 0, 0.0 -0.978 360.0 360.0-122.6 128.3 33.1 -22.7 5.3 81 115 A R 0 0 186 -79,-2.3 -78,-0.0 -2,-0.5 -2,-0.0 -0.235 360.0 360.0 -55.0 360.0 32.5 -26.5 4.8