==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 14-NOV-04 1Y02 . COMPND 2 MOLECULE: FYVE-RING FINGER PROTEIN SAKURA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.D.TIBBETTS,L.GU,E.N.SHIOZAKI,Y.SHI . 91 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6122.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 63.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 29.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 20 A P 0 0 104 0, 0.0 9,-0.4 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 128.8 22.5 18.7 15.5 2 21 A S - 0 0 55 7,-0.2 2,-0.3 23,-0.1 23,-0.3 -0.934 360.0 -76.9-146.6 167.4 23.4 17.4 19.0 3 22 A C > - 0 0 2 5,-3.2 4,-1.4 -2,-0.3 23,-0.3 -0.535 30.1-147.2 -72.4 129.0 26.4 16.9 21.2 4 23 A K T 4 S+ 0 0 121 21,-3.0 -1,-0.1 -2,-0.3 22,-0.1 0.764 95.1 42.7 -65.6 -26.0 28.4 13.8 20.2 5 24 A S T 4 S+ 0 0 83 20,-0.3 -1,-0.1 3,-0.1 21,-0.1 0.963 131.1 13.9 -86.1 -62.3 29.4 13.2 23.9 6 25 A C T 4 S- 0 0 74 2,-0.1 -2,-0.1 3,-0.0 3,-0.1 0.568 91.0-129.0 -93.9 -10.7 26.3 13.8 26.0 7 26 A G < + 0 0 42 -4,-1.4 -3,-0.1 1,-0.2 19,-0.0 0.397 59.1 139.7 79.6 -3.9 23.7 13.8 23.2 8 27 A A - 0 0 44 -6,-0.1 -5,-3.2 1,-0.1 -1,-0.2 -0.217 48.6-120.9 -70.9 163.3 22.1 17.0 24.4 9 28 A H - 0 0 149 -7,-0.2 2,-0.4 -3,-0.1 -7,-0.2 -0.394 24.5-108.3 -95.5 177.4 20.9 19.7 22.0 10 29 A F - 0 0 35 -9,-0.4 3,-0.4 -2,-0.1 6,-0.1 -0.904 4.4-143.0-113.1 137.5 22.1 23.4 21.8 11 30 A A S S+ 0 0 112 -2,-0.4 2,-0.3 1,-0.3 -1,-0.1 0.813 106.4 20.7 -63.4 -28.0 20.0 26.4 22.8 12 31 A N S > S- 0 0 63 1,-0.1 3,-2.9 -3,-0.0 -1,-0.3 -0.890 74.0-154.8-143.3 105.3 21.7 28.0 19.8 13 32 A T G > S+ 0 0 74 -3,-0.4 3,-1.3 -2,-0.3 -2,-0.1 0.718 94.0 67.8 -54.3 -22.7 23.1 25.7 17.1 14 33 A A G 3 S+ 0 0 83 1,-0.3 -1,-0.3 -4,-0.1 -3,-0.0 0.664 95.7 57.8 -71.8 -14.9 25.5 28.4 16.1 15 34 A R G < S+ 0 0 165 -3,-2.9 -1,-0.3 2,-0.1 -2,-0.2 0.396 75.2 122.1 -95.7 0.5 27.2 27.9 19.5 16 35 A K < - 0 0 71 -3,-1.3 2,-0.5 -4,-0.2 11,-0.2 -0.359 62.0-128.0 -63.0 145.9 27.9 24.2 19.0 17 36 A Q E -A 26 0A 37 9,-2.7 9,-3.0 20,-0.0 2,-0.5 -0.875 14.5-151.4-102.4 125.1 31.7 23.5 19.3 18 37 A T E -A 25 0A 75 -2,-0.5 2,-0.4 7,-0.2 7,-0.2 -0.833 18.3-127.7 -97.2 126.2 33.4 21.6 16.6 19 38 A C > - 0 0 1 5,-2.6 4,-1.6 -2,-0.5 18,-0.2 -0.574 7.7-145.6 -73.7 126.9 36.4 19.5 17.7 20 39 A L T 4 S+ 0 0 99 16,-2.4 -1,-0.2 -2,-0.4 17,-0.1 0.756 95.8 43.5 -63.5 -24.3 39.5 20.3 15.5 21 40 A D T 4 S+ 0 0 29 15,-0.2 -1,-0.2 3,-0.1 16,-0.1 0.947 129.5 17.5 -87.9 -58.8 40.6 16.7 15.8 22 41 A C T 4 S- 0 0 8 2,-0.1 -2,-0.2 16,-0.0 3,-0.1 0.639 90.9-139.6 -89.8 -14.8 37.6 14.4 15.4 23 42 A K < + 0 0 140 -4,-1.6 2,-0.1 1,-0.2 -3,-0.1 0.607 55.7 132.9 67.4 14.9 35.5 17.2 13.8 24 43 A K - 0 0 49 1,-0.1 -5,-2.6 -6,-0.1 2,-0.3 -0.475 60.2-103.0 -89.9 166.9 32.3 16.2 15.6 25 44 A N E +A 18 0A 46 -23,-0.3 -21,-3.0 -7,-0.2 2,-0.3 -0.748 43.3 172.6 -96.0 140.7 30.1 18.7 17.4 26 45 A F E -A 17 0A 4 -9,-3.0 -9,-2.7 -2,-0.3 5,-0.1 -0.936 34.3 -96.5-142.7 163.9 30.1 19.1 21.2 27 46 A C > - 0 0 17 -2,-0.3 3,-1.1 -11,-0.2 -11,-0.1 -0.296 37.9-116.1 -71.1 162.0 28.8 21.2 24.1 28 47 A M G > S+ 0 0 107 1,-0.3 3,-1.1 2,-0.2 -1,-0.1 0.866 123.1 52.8 -66.6 -33.4 31.0 23.9 25.5 29 48 A T G 3 S+ 0 0 123 1,-0.2 -1,-0.3 3,-0.0 -2,-0.0 0.455 105.9 53.9 -80.2 -1.0 30.9 21.8 28.7 30 49 A C G < S+ 0 0 15 -3,-1.1 9,-1.3 2,-0.0 2,-0.3 0.077 110.4 48.4-117.9 20.6 32.0 18.8 26.6 31 50 A S E < S-B 38 0B 10 -3,-1.1 2,-0.3 7,-0.3 7,-0.3 -0.907 71.6-146.1-148.1 172.0 35.1 20.4 25.1 32 51 A S E B 37 0B 33 5,-2.8 5,-1.6 -2,-0.3 -3,-0.0 -0.935 360.0 360.0-152.1 174.9 38.0 22.5 26.4 33 52 A Q 0 0 185 -2,-0.3 3,-0.2 3,-0.1 -2,-0.0 -0.422 360.0 360.0 57.2 360.0 40.8 25.2 26.3 34 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 57 A P 0 0 105 0, 0.0 2,-0.5 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 73.5 42.5 24.7 19.4 36 58 A R + 0 0 68 -3,-0.2 -16,-2.4 -18,-0.1 2,-0.3 -0.617 360.0 172.2 -74.3 119.6 39.0 23.8 20.5 37 59 A L E -B 32 0B 1 -5,-1.6 -5,-2.8 -2,-0.5 -18,-0.1 -0.933 34.7-113.5-130.1 152.1 39.0 20.1 21.3 38 60 A C E > -B 31 0B 2 -2,-0.3 4,-2.2 -7,-0.3 -7,-0.3 -0.380 43.3-101.9 -75.5 165.3 36.5 17.7 22.8 39 61 A L H > S+ 0 0 84 -9,-1.3 4,-1.8 1,-0.2 -8,-0.1 0.834 119.8 47.5 -59.9 -34.5 37.5 16.2 26.2 40 62 A L H > S+ 0 0 22 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.937 112.8 46.4 -74.3 -45.3 38.6 12.9 24.8 41 63 A C H > S+ 0 0 0 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.858 112.9 52.1 -64.6 -32.0 40.7 14.3 21.9 42 64 A Q H X S+ 0 0 42 -4,-2.2 4,-1.6 2,-0.2 -1,-0.2 0.923 108.8 50.8 -67.3 -43.7 42.2 16.7 24.4 43 65 A R H X S+ 0 0 111 -4,-1.8 4,-0.5 1,-0.2 -2,-0.2 0.871 111.0 47.9 -61.7 -40.2 43.1 13.8 26.7 44 66 A F H ><>S+ 0 0 0 -4,-2.3 3,-0.9 1,-0.2 5,-0.9 0.858 106.8 55.1 -72.2 -34.4 44.7 11.9 23.9 45 67 A R H ><5S+ 0 0 100 -4,-1.9 3,-1.6 1,-0.2 -1,-0.2 0.877 101.3 61.2 -64.2 -33.5 46.8 14.8 22.7 46 68 A A H 3<5S+ 0 0 84 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.730 94.3 62.4 -63.9 -23.2 48.1 15.1 26.3 47 69 A T T X<5S- 0 0 13 -3,-0.9 3,-1.7 -4,-0.5 -1,-0.3 0.623 99.7-136.2 -77.5 -12.4 49.6 11.6 26.0 48 70 A A T < 5 - 0 0 57 -3,-1.6 -3,-0.1 -4,-0.4 3,-0.1 0.724 56.4 -81.3 62.0 18.7 51.8 12.8 23.2 49 71 A F T 3 - 0 0 99 -3,-1.7 4,-2.4 1,-0.1 3,-0.8 -0.742 40.1-135.1 -83.9 123.8 53.4 7.7 23.6 51 73 A R H 3> S+ 0 0 116 -2,-0.5 4,-2.3 1,-0.3 5,-0.2 0.844 103.0 53.3 -46.5 -45.1 52.6 4.0 23.4 52 74 A E H 3> S+ 0 0 123 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.874 111.1 45.5 -61.7 -39.4 53.2 3.5 27.1 53 75 A E H X4 S+ 0 0 79 -3,-0.8 3,-0.5 -6,-0.2 4,-0.3 0.884 112.6 50.5 -72.3 -38.8 50.7 6.3 28.0 54 76 A L H >< S+ 0 0 0 -4,-2.4 3,-1.5 1,-0.2 -2,-0.2 0.872 104.9 58.1 -65.5 -37.1 48.1 5.0 25.5 55 77 A M H 3< S+ 0 0 57 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.746 100.8 57.6 -65.3 -22.7 48.4 1.5 27.0 56 78 A K T << S+ 0 0 138 -4,-0.7 -1,-0.3 -3,-0.5 -2,-0.2 0.553 87.2 104.7 -84.3 -7.8 47.5 2.9 30.4 57 79 A M S < S- 0 0 23 -3,-1.5 2,-0.1 -4,-0.3 -3,-0.0 -0.373 83.1 -97.2 -74.6 152.3 44.2 4.3 29.0 58 80 A K >> - 0 0 139 1,-0.1 4,-2.0 -2,-0.1 3,-0.5 -0.408 29.0-123.1 -67.9 142.4 40.8 2.6 29.7 59 81 A V H 3> S+ 0 0 77 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.882 112.0 54.9 -53.6 -42.1 39.6 0.3 26.9 60 82 A K H 3> S+ 0 0 140 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.858 107.2 49.7 -62.1 -36.8 36.4 2.3 26.6 61 83 A D H <> S+ 0 0 22 -3,-0.5 4,-2.4 2,-0.2 -1,-0.2 0.884 111.6 48.0 -70.0 -38.2 38.3 5.6 26.1 62 84 A L H X S+ 0 0 0 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.938 115.6 45.4 -66.3 -45.1 40.5 4.0 23.4 63 85 A R H X S+ 0 0 122 -4,-2.7 4,-2.3 -5,-0.2 -2,-0.2 0.934 114.9 46.8 -63.3 -47.6 37.4 2.5 21.7 64 86 A D H X S+ 0 0 52 -4,-2.8 4,-2.2 2,-0.2 -1,-0.2 0.881 110.6 52.6 -63.6 -39.2 35.4 5.8 22.0 65 87 A Y H X S+ 0 0 1 -4,-2.4 4,-1.2 2,-0.2 -1,-0.2 0.942 111.2 46.2 -62.3 -47.1 38.3 7.9 20.7 66 88 A L H <>S+ 0 0 0 -4,-2.2 5,-2.5 1,-0.2 3,-0.3 0.894 110.6 53.9 -63.7 -37.7 38.7 5.7 17.6 67 89 A S H ><5S+ 0 0 54 -4,-2.3 3,-1.9 1,-0.2 -1,-0.2 0.902 104.4 54.5 -62.6 -40.9 34.9 5.8 17.1 68 90 A L H 3<5S+ 0 0 23 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.807 108.0 50.4 -61.9 -29.6 35.0 9.6 17.1 69 91 A H T 3<5S- 0 0 34 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.220 121.1-112.2 -93.2 13.7 37.6 9.4 14.4 70 92 A D T < 5S+ 0 0 118 -3,-1.9 2,-0.5 1,-0.2 -3,-0.2 0.837 71.0 139.2 58.6 40.3 35.4 7.1 12.4 71 93 A I < - 0 0 44 -5,-2.5 2,-0.2 -6,-0.1 -1,-0.2 -0.960 48.3-131.5-115.7 127.9 37.7 4.1 12.8 72 94 A S - 0 0 79 -2,-0.5 3,-0.1 1,-0.1 -5,-0.0 -0.557 21.2-177.7 -81.4 142.2 36.2 0.7 13.5 73 95 A T > + 0 0 11 -2,-0.2 3,-0.9 1,-0.1 -1,-0.1 -0.037 52.1 112.2-124.7 25.7 37.5 -1.5 16.3 74 96 A E T 3 S+ 0 0 150 1,-0.2 -1,-0.1 3,-0.0 -2,-0.0 0.727 77.7 49.7 -72.1 -23.8 35.2 -4.5 15.6 75 97 A M T 3 S+ 0 0 159 -3,-0.1 2,-0.4 2,-0.0 -1,-0.2 0.314 87.2 109.3 -98.4 7.4 38.0 -6.7 14.5 76 98 A C < + 0 0 33 -3,-0.9 3,-0.1 1,-0.1 -3,-0.1 -0.698 33.3 169.1 -88.4 133.6 40.2 -6.0 17.5 77 99 A R + 0 0 234 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.648 64.2 46.6-113.5 -24.8 40.7 -8.8 20.1 78 100 A E S >> S- 0 0 130 1,-0.1 3,-1.4 0, 0.0 4,-0.8 -0.919 78.9-122.3-122.2 149.3 43.5 -7.3 22.2 79 101 A K H >> S+ 0 0 74 -2,-0.3 4,-1.8 1,-0.3 3,-0.8 0.841 110.1 64.6 -54.6 -36.9 44.0 -3.9 23.8 80 102 A E H 3> S+ 0 0 87 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.837 94.9 59.8 -58.2 -31.6 47.3 -3.5 22.0 81 103 A E H <> S+ 0 0 68 -3,-1.4 4,-1.7 2,-0.2 -1,-0.3 0.876 103.8 50.2 -63.8 -36.8 45.4 -3.5 18.7 82 104 A L H < S+ 0 0 49 -4,-2.6 3,-1.0 1,-0.2 -2,-0.2 0.896 108.7 56.8 -61.8 -39.4 49.1 5.5 16.8 88 110 A G H 3< S+ 0 0 66 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.855 107.6 44.6 -61.8 -39.0 48.2 4.9 13.1 89 111 A Q T 3< S+ 0 0 43 -4,-1.7 -1,-0.2 -3,-0.2 -2,-0.2 0.408 82.3 130.2 -88.1 3.2 45.8 7.8 12.8 90 112 A Q < - 0 0 71 -3,-1.0 2,-0.1 -4,-0.4 -3,-0.0 -0.348 64.6-113.3 -59.6 130.9 48.1 10.2 14.6 91 113 A P 0 0 90 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.365 360.0 360.0 -67.2 143.8 48.5 13.4 12.6 92 114 A V 0 0 180 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.388 360.0 360.0-140.1 360.0 51.9 14.2 11.2