==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 09-DEC-04 1Y7N . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.E.DUQUESNE,M.DE RUIJTER,J.BROUWER,J.W.DRIJFHOUT, . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5162.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 73.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 29.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 19.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A E 0 0 187 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 164.5 18.6 -2.1 12.0 2 8 A T + 0 0 60 1,-0.2 2,-0.4 48,-0.1 4,-0.1 0.996 360.0 173.1 61.2 77.1 15.9 -3.1 9.7 3 9 A M - 0 0 153 2,-0.1 2,-0.5 0, 0.0 -1,-0.2 -0.920 35.5 -4.5-119.2 141.6 17.9 -4.4 6.8 4 10 A G S S+ 0 0 71 -2,-0.4 2,-1.2 2,-0.1 77,-0.0 -0.670 115.3 17.4 95.7-125.7 17.0 -6.1 3.6 5 11 A N S S+ 0 0 116 -2,-0.5 2,-0.5 2,-0.1 79,-0.1 -0.741 75.7 150.2 -96.5 91.7 13.6 -7.2 2.7 6 12 A V - 0 0 36 -2,-1.2 2,-0.6 75,-0.2 75,-0.2 -0.993 25.9-168.9-128.6 126.8 11.3 -5.3 5.0 7 13 A T E -A 80 0A 56 73,-3.8 73,-3.0 -2,-0.5 2,-0.3 -0.965 16.3-146.5-118.1 107.2 7.9 -4.3 4.1 8 14 A T E -A 79 0A 72 -2,-0.6 2,-0.4 71,-0.3 71,-0.3 -0.560 12.8-158.9 -79.1 140.7 6.5 -1.9 6.5 9 15 A V E -A 78 0A 0 69,-3.1 69,-2.9 -2,-0.3 2,-0.6 -0.955 7.3-156.5-122.4 136.7 2.8 -2.2 7.2 10 16 A L E -A 77 0A 68 31,-1.4 2,-0.5 -2,-0.4 67,-0.2 -0.961 9.6-169.7-115.6 116.0 0.6 0.4 8.5 11 17 A I E -A 76 0A 0 65,-2.6 65,-3.5 -2,-0.6 2,-0.6 -0.839 6.9-160.8 -98.6 131.0 -2.5 -0.8 10.1 12 18 A R E -A 75 0A 162 -2,-0.5 63,-0.2 63,-0.2 28,-0.1 -0.899 14.7-174.8-115.6 101.4 -5.1 1.8 10.9 13 19 A R E -A 74 0A 5 61,-2.3 61,-2.8 -2,-0.6 3,-0.1 -0.846 20.3-159.6-100.8 119.5 -7.3 0.3 13.5 14 20 A P S S- 0 0 78 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.934 70.6 -38.3 -59.9 -48.5 -10.4 2.1 14.7 15 21 A D S > S- 0 0 70 3,-0.1 3,-1.4 57,-0.1 59,-0.1 -0.915 73.1 -71.1-165.9-175.2 -10.7 0.2 18.0 16 22 A L T 3 S+ 0 0 80 1,-0.3 56,-0.1 -2,-0.3 57,-0.0 0.589 120.0 63.5 -73.7 -11.7 -10.3 -3.3 19.5 17 23 A R T 3 S+ 0 0 235 1,-0.2 2,-1.2 2,-0.1 -1,-0.3 0.634 89.3 74.5 -86.7 -12.4 -13.4 -4.7 17.9 18 24 A Y S < S- 0 0 127 -3,-1.4 -1,-0.2 18,-0.0 -3,-0.1 -0.818 80.9-162.5 -97.3 89.9 -11.7 -4.2 14.6 19 25 A Q - 0 0 129 -2,-1.2 18,-0.4 1,-0.1 19,-0.2 -0.405 32.7 -95.8 -77.5 161.8 -9.3 -7.0 14.7 20 26 A L - 0 0 19 1,-0.1 18,-1.7 17,-0.1 19,-0.2 0.813 43.9-136.3 -45.9 -48.8 -6.2 -7.2 12.5 21 27 A G + 0 0 24 1,-0.4 12,-3.5 16,-0.2 2,-0.4 0.629 69.7 93.4 97.1 13.7 -7.8 -9.4 10.0 22 28 A F E S-B 32 0A 19 10,-0.2 2,-0.6 16,-0.1 -1,-0.4 -0.988 70.9-128.2-137.3 148.6 -4.9 -11.7 9.5 23 29 A S E -B 31 0A 64 8,-2.7 7,-3.3 -2,-0.4 8,-1.4 -0.861 30.6-174.6 -96.5 122.5 -4.1 -14.9 11.2 24 30 A V E -B 29 0A 30 -2,-0.6 2,-0.5 5,-0.3 5,-0.3 -0.913 13.7-167.3-120.5 143.2 -0.6 -15.0 12.6 25 31 A Q E > S-B 28 0A 117 3,-2.7 3,-2.3 -2,-0.4 -2,-0.0 -0.974 78.5 -22.9-130.9 114.7 1.3 -17.8 14.1 26 32 A N T 3 S- 0 0 103 -2,-0.5 3,-0.1 1,-0.3 34,-0.1 0.601 129.9 -48.1 64.9 14.4 4.5 -17.0 16.0 27 33 A G T 3 S+ 0 0 1 1,-0.3 22,-3.6 35,-0.1 2,-0.5 0.336 115.7 114.3 107.5 -3.2 4.8 -13.8 14.0 28 34 A I E < -BC 25 48A 59 -3,-2.3 -3,-2.7 20,-0.3 2,-0.5 -0.895 67.1-126.0-109.6 124.5 4.2 -15.4 10.6 29 35 A I E +B 24 0A 3 18,-3.1 17,-2.4 -2,-0.5 18,-0.4 -0.551 31.5 171.8 -69.0 116.7 1.1 -14.4 8.7 30 36 A C E + 0 0 74 -7,-3.3 2,-0.3 -2,-0.5 -6,-0.2 0.748 64.3 6.2 -97.6 -32.2 -0.8 -17.6 7.7 31 37 A S E -B 23 0A 59 -8,-1.4 -8,-2.7 13,-0.1 2,-0.4 -0.990 58.7-150.1-155.0 153.5 -4.0 -16.1 6.3 32 38 A L E -B 22 0A 28 -2,-0.3 2,-0.7 -10,-0.3 -10,-0.2 -0.996 16.4-134.8-132.1 130.9 -5.5 -12.7 5.5 33 39 A M > - 0 0 130 -12,-3.5 3,-1.8 -2,-0.4 6,-0.5 -0.768 28.3-132.6 -84.8 115.5 -9.1 -11.7 5.5 34 40 A R T 3 S+ 0 0 163 -2,-0.7 3,-0.1 1,-0.3 -13,-0.0 -0.491 92.8 28.5 -70.8 135.0 -9.7 -9.8 2.3 35 41 A G T 3 S+ 0 0 52 1,-0.4 -1,-0.3 -2,-0.2 2,-0.1 0.379 99.5 119.1 92.1 -2.7 -11.6 -6.6 3.0 36 42 A G S X> S- 0 0 15 -3,-1.8 4,-1.5 -15,-0.2 3,-0.7 -0.451 82.2-102.3 -92.0 168.6 -10.1 -6.4 6.4 37 43 A I H 3> S+ 0 0 24 -18,-0.4 4,-2.0 1,-0.2 -25,-0.2 0.847 119.4 60.3 -57.2 -36.8 -7.8 -3.7 7.9 38 44 A A H 3>>S+ 0 0 0 -18,-1.7 5,-2.8 2,-0.2 4,-1.3 0.860 102.2 51.5 -61.6 -35.5 -4.7 -5.9 7.4 39 45 A E H <45S+ 0 0 58 -3,-0.7 3,-0.4 -6,-0.5 -1,-0.2 0.924 112.0 47.1 -66.3 -41.5 -5.4 -6.0 3.6 40 46 A R H <5S+ 0 0 198 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.806 108.1 57.7 -66.9 -31.8 -5.6 -2.2 3.7 41 47 A G H <5S- 0 0 12 -4,-2.0 -31,-1.4 -5,-0.2 -1,-0.2 0.766 120.1-108.7 -70.9 -27.3 -2.4 -2.2 5.8 42 48 A G T <5 + 0 0 31 -4,-1.3 2,-0.2 -3,-0.4 -3,-0.2 0.644 62.0 159.1 102.6 21.5 -0.5 -4.1 3.1 43 49 A V < - 0 0 0 -5,-2.8 2,-0.4 -6,-0.1 -1,-0.3 -0.564 16.1-174.6 -77.7 137.4 -0.3 -7.3 5.0 44 50 A R - 0 0 99 -2,-0.2 3,-0.4 -13,-0.0 -15,-0.2 -0.989 29.2-103.6-136.1 146.9 0.4 -10.4 2.9 45 51 A V S S+ 0 0 76 -2,-0.4 -15,-0.2 1,-0.2 3,-0.1 -0.373 103.4 42.6 -67.9 140.5 0.5 -14.0 3.8 46 52 A G S S+ 0 0 34 -17,-2.4 2,-0.4 1,-0.4 -1,-0.2 0.762 88.7 124.2 90.0 25.1 3.9 -15.5 4.0 47 53 A H - 0 0 30 -3,-0.4 -18,-3.1 -18,-0.4 2,-0.5 -0.942 54.0-141.1-119.2 144.9 5.3 -12.5 5.9 48 54 A R E -CD 28 81A 48 33,-2.7 33,-2.4 -2,-0.4 2,-0.6 -0.925 17.6-131.1-107.2 124.1 7.0 -12.4 9.2 49 55 A I E + D 0 80A 1 -22,-3.6 31,-0.3 -2,-0.5 3,-0.1 -0.664 31.9 170.3 -73.0 115.1 6.2 -9.6 11.5 50 56 A I E + 0 0 14 29,-3.8 8,-1.4 -2,-0.6 7,-0.5 0.673 62.5 18.4-103.6 -18.1 9.5 -8.3 12.7 51 57 A E E -ED 56 79A 33 28,-1.3 28,-1.9 5,-0.3 2,-0.4 -0.994 55.3-166.5-154.0 146.8 8.4 -5.2 14.5 52 58 A I E > S-ED 55 78A 1 3,-2.9 3,-2.0 -2,-0.3 26,-0.2 -0.968 74.1 -27.6-139.5 119.5 5.2 -3.7 15.9 53 59 A N T 3 S- 0 0 69 24,-3.0 25,-0.1 -2,-0.4 3,-0.1 0.706 130.0 -38.7 46.9 33.3 4.8 -0.0 17.0 54 60 A G T 3 S+ 0 0 59 23,-0.4 2,-0.5 1,-0.3 -1,-0.3 0.461 118.2 101.7 104.8 -1.0 8.5 0.4 17.7 55 61 A Q E < S-E 52 0A 95 -3,-2.0 -3,-2.9 2,-0.0 2,-0.8 -0.982 70.6-129.5-119.7 125.8 9.3 -2.9 19.3 56 62 A S E +E 51 0A 76 -2,-0.5 3,-0.4 -5,-0.3 -5,-0.3 -0.637 28.5 177.4 -69.3 110.8 11.0 -5.6 17.4 57 63 A V > + 0 0 0 -2,-0.8 3,-1.4 -7,-0.5 -6,-0.2 0.260 52.2 103.5-103.1 13.6 8.8 -8.5 18.1 58 64 A V T 3 S+ 0 0 79 -8,-1.4 -1,-0.2 1,-0.3 -7,-0.1 0.663 91.1 36.3 -72.8 -15.4 10.7 -10.8 15.9 59 65 A A T 3 S+ 0 0 94 -3,-0.4 -1,-0.3 -9,-0.2 -2,-0.1 0.157 98.4 108.3-117.3 14.6 12.2 -12.4 19.0 60 66 A T S < S- 0 0 31 -3,-1.4 -3,-0.1 1,-0.1 2,-0.0 -0.672 74.2-109.5 -93.6 140.3 9.0 -12.0 20.9 61 67 A P > - 0 0 82 0, 0.0 4,-2.9 0, 0.0 5,-0.2 -0.329 31.1-100.6 -70.2 161.7 6.9 -15.2 21.7 62 68 A H H > S+ 0 0 95 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.847 119.8 48.4 -42.6 -56.3 3.6 -16.1 20.1 63 69 A E H > S+ 0 0 127 2,-0.2 4,-3.2 1,-0.2 -1,-0.2 0.915 113.1 46.5 -57.8 -51.0 1.5 -14.9 23.0 64 70 A K H > S+ 0 0 86 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.960 111.6 50.5 -58.8 -54.0 3.2 -11.6 23.3 65 71 A I H X S+ 0 0 2 -4,-2.9 4,-2.2 1,-0.2 -2,-0.2 0.898 116.8 42.1 -51.8 -45.1 3.1 -10.9 19.6 66 72 A V H X S+ 0 0 59 -4,-2.6 4,-3.0 -5,-0.2 -1,-0.2 0.908 113.6 51.5 -70.3 -39.5 -0.6 -11.7 19.6 67 73 A H H X S+ 0 0 112 -4,-3.2 4,-1.0 2,-0.2 -2,-0.2 0.872 111.3 48.2 -68.4 -37.6 -1.3 -9.8 22.8 68 74 A I H >X S+ 0 0 33 -4,-2.9 4,-1.3 2,-0.2 3,-0.7 0.945 114.5 44.6 -66.4 -49.8 0.4 -6.7 21.6 69 75 A L H 3< S+ 0 0 4 -4,-2.2 3,-0.3 -5,-0.3 -2,-0.2 0.888 110.3 56.7 -62.2 -40.0 -1.5 -6.8 18.2 70 76 A S H 3< S+ 0 0 45 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.756 114.7 36.5 -63.8 -27.3 -4.7 -7.5 20.0 71 77 A N H << S+ 0 0 93 -4,-1.0 2,-0.4 -3,-0.7 -1,-0.2 0.552 96.6 92.3-107.6 -7.2 -4.4 -4.4 22.2 72 78 A A < + 0 0 18 -4,-1.3 2,-0.3 -3,-0.3 4,-0.1 -0.718 47.8 165.3 -92.1 135.5 -2.9 -1.9 19.7 73 79 A V + 0 0 60 -2,-0.4 2,-0.2 2,-0.1 -57,-0.1 -0.808 37.2 42.0-135.0 177.1 -5.1 0.3 17.7 74 80 A G E S-A 13 0A 21 -61,-2.8 -61,-2.3 -2,-0.3 2,-0.9 -0.541 112.8 -0.9 85.8-153.5 -4.6 3.5 15.5 75 81 A E E S-A 12 0A 107 -63,-0.2 2,-0.6 -2,-0.2 -63,-0.2 -0.677 76.7-171.5 -75.1 108.2 -1.7 3.9 13.2 76 82 A I E -A 11 0A 0 -65,-3.5 -65,-2.6 -2,-0.9 2,-0.7 -0.924 10.4-155.5-111.4 119.4 0.2 0.7 13.8 77 83 A H E +A 10 0A 102 -2,-0.6 -24,-3.0 -67,-0.2 -23,-0.4 -0.844 20.5 169.2 -98.0 116.9 3.6 0.4 12.2 78 84 A M E -AD 9 52A 0 -69,-2.9 -69,-3.1 -2,-0.7 2,-0.5 -0.908 24.5-145.1-121.1 158.8 4.7 -3.1 11.6 79 85 A K E -AD 8 51A 49 -28,-1.9 -29,-3.8 -2,-0.3 -28,-1.3 -0.992 20.6-174.5-123.8 123.7 7.6 -4.3 9.7 80 86 A T E -AD 7 49A 0 -73,-3.0 -73,-3.8 -2,-0.5 -31,-0.2 -0.912 9.1-162.0-120.2 149.1 7.2 -7.5 7.9 81 87 A M E - D 0 48A 35 -33,-2.4 -33,-2.7 -2,-0.4 2,-0.8 -0.832 44.1 -96.0-120.1 164.7 9.7 -9.6 5.9 82 88 A P - 0 0 59 0, 0.0 -35,-0.2 0, 0.0 -76,-0.1 0.091 67.4-100.8 -70.3 28.7 8.9 -12.3 3.3 83 89 A A 0 0 38 -2,-0.8 -36,-0.1 -35,-0.2 -34,-0.1 0.511 360.0 360.0 63.5 11.2 9.3 -14.8 6.3 84 90 A A 0 0 108 -79,-0.1 -1,-0.1 -38,-0.1 -37,-0.0 0.915 360.0 360.0 -88.4 360.0 12.8 -15.6 5.1