==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS,SIGNALING PROTEIN12-DEC-04 1Y8F . COMPND 2 MOLECULE: UNC-13 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR N.SHEN,O.GURYEV,J.RIZO . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3626.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 17.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 566 A Q 0 0 148 0, 0.0 2,-0.2 0, 0.0 48,-0.1 0.000 360.0 360.0 360.0 150.5 13.1 -3.1 3.1 2 567 A H - 0 0 29 1,-0.1 2,-2.6 46,-0.1 45,-0.0 -0.426 360.0-128.1 -65.4 130.7 9.7 -4.1 1.9 3 568 A N - 0 0 96 -2,-0.2 30,-0.9 2,-0.0 2,-0.3 -0.369 36.1-171.2 -77.7 62.0 9.6 -4.7 -1.9 4 569 A F E -A 32 0A 27 -2,-2.6 28,-0.3 28,-0.2 2,-0.3 -0.412 4.7-174.6 -61.5 117.6 6.7 -2.3 -2.3 5 570 A E E -A 31 0A 84 26,-3.8 26,-2.6 -2,-0.3 2,-0.7 -0.808 39.0 -84.7-114.6 155.9 5.4 -2.6 -5.8 6 571 A V E +A 30 0A 88 -2,-0.3 2,-0.4 24,-0.2 24,-0.3 -0.436 58.2 172.2 -62.3 105.2 2.7 -0.6 -7.6 7 572 A W E -A 29 0A 35 22,-2.0 22,-1.1 -2,-0.7 2,-0.6 -0.968 25.8-142.6-121.6 132.4 -0.5 -2.4 -6.7 8 573 A T E -A 28 0A 57 -2,-0.4 2,-0.6 20,-0.3 20,-0.3 -0.830 22.0-124.9 -97.2 120.6 -4.0 -1.3 -7.4 9 574 A A - 0 0 0 18,-1.6 4,-0.1 -2,-0.6 18,-0.0 -0.482 21.7-171.4 -65.4 109.3 -6.6 -2.0 -4.7 10 575 A T S S+ 0 0 111 -2,-0.6 -1,-0.2 2,-0.1 18,-0.1 0.777 76.4 23.9 -72.0 -25.6 -9.4 -3.9 -6.4 11 576 A T S S- 0 0 85 16,-0.1 11,-0.1 -3,-0.1 -1,-0.1 -0.928 113.5 -62.6-136.4 159.7 -11.4 -3.5 -3.2 12 577 A P + 0 0 83 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.178 64.1 176.0 -45.3 110.5 -11.5 -1.1 -0.3 13 578 A T - 0 0 29 14,-0.1 9,-3.5 -4,-0.1 2,-0.2 -0.978 22.3-136.9-127.4 137.3 -8.0 -1.5 1.3 14 579 A Y - 0 0 133 -2,-0.4 2,-0.5 7,-0.3 7,-0.2 -0.543 27.4-105.4 -89.5 156.2 -6.5 0.3 4.3 15 580 A C > - 0 0 0 5,-0.4 4,-2.5 -2,-0.2 24,-0.3 -0.690 14.1-147.8 -84.4 126.0 -2.9 1.6 4.4 16 581 A Y T 4 S+ 0 0 167 22,-3.0 23,-0.2 -2,-0.5 -1,-0.1 0.639 99.1 51.9 -65.0 -13.3 -0.6 -0.4 6.7 17 582 A E T 4 S+ 0 0 69 21,-0.2 -1,-0.2 3,-0.1 22,-0.1 0.928 132.8 4.2 -87.8 -57.6 1.2 2.9 7.3 18 583 A C T 4 S- 0 0 70 2,-0.1 -2,-0.2 29,-0.0 21,-0.0 0.201 94.6-119.5-114.9 13.5 -1.6 5.3 8.4 19 584 A E < + 0 0 129 -4,-2.5 2,-0.5 1,-0.2 -3,-0.2 0.919 62.8 149.0 48.0 51.3 -4.5 2.8 8.4 20 585 A G - 0 0 21 -5,-0.1 -5,-0.4 -7,-0.0 -1,-0.2 -0.964 53.1-110.7-123.7 123.5 -6.3 4.8 5.7 21 586 A L - 0 0 68 -2,-0.5 -7,-0.3 -7,-0.2 2,-0.1 -0.121 19.2-142.1 -46.3 134.3 -8.6 3.4 3.0 22 587 A L + 0 0 3 -9,-3.5 -13,-0.2 -11,-0.1 -1,-0.2 -0.186 68.1 100.8 -95.0 40.7 -7.1 3.6 -0.4 23 588 A W + 0 0 103 -2,-0.1 2,-0.7 1,-0.1 3,-0.3 -0.284 30.9 83.4-108.4-165.1 -10.4 4.4 -2.0 24 589 A G S S- 0 0 74 1,-0.2 3,-0.1 -2,-0.1 -1,-0.1 -0.650 111.6 -20.0 109.4 -76.1 -12.1 7.6 -3.2 25 590 A I S S+ 0 0 173 -2,-0.7 2,-1.0 1,-0.1 -1,-0.2 0.557 132.4 41.9-131.4 -61.5 -10.7 8.2 -6.7 26 591 A A - 0 0 68 -3,-0.3 -1,-0.1 1,-0.2 -17,-0.1 -0.759 56.6-175.6-100.2 90.4 -7.4 6.4 -7.4 27 592 A R + 0 0 126 -2,-1.0 -18,-1.6 -3,-0.1 -1,-0.2 0.722 50.1 119.2 -54.7 -21.3 -7.8 2.9 -5.9 28 593 A Q E +A 8 0A 83 -20,-0.3 -20,-0.3 -3,-0.1 2,-0.3 0.094 36.7 147.9 -42.5 158.7 -4.2 2.5 -6.9 29 594 A G E -A 7 0A 0 -22,-1.1 -22,-2.0 11,-0.1 2,-0.4 -0.934 41.5 -86.7-171.4-167.0 -1.7 1.8 -4.2 30 595 A M E +AB 6 39A 4 9,-3.9 9,-3.7 -24,-0.3 2,-0.3 -0.961 32.8 179.7-127.4 143.6 1.6 0.1 -3.1 31 596 A R E -AB 5 38A 86 -26,-2.6 -26,-3.8 -2,-0.4 7,-0.3 -0.998 27.3-118.6-146.6 141.1 2.1 -3.5 -1.8 32 597 A C E > -A 4 0A 0 5,-2.8 4,-0.6 -2,-0.3 -28,-0.2 -0.505 12.7-146.0 -76.8 143.1 5.1 -5.5 -0.7 33 598 A T T 4 S+ 0 0 65 -30,-0.9 -1,-0.1 -2,-0.2 -29,-0.1 -0.046 95.7 42.7 -98.4 30.7 5.9 -8.7 -2.7 34 599 A E T 4 S+ 0 0 119 3,-0.1 -1,-0.1 17,-0.0 -32,-0.0 0.504 126.9 20.2-139.5 -39.4 7.2 -10.5 0.5 35 600 A C T 4 S- 0 0 82 2,-0.1 -2,-0.1 16,-0.0 3,-0.1 0.583 93.0-124.8-111.3 -18.9 4.8 -9.7 3.3 36 601 A G < + 0 0 26 -4,-0.6 -3,-0.1 1,-0.3 -32,-0.0 0.376 54.1 156.6 88.6 -5.1 1.7 -8.6 1.3 37 602 A V - 0 0 11 -6,-0.1 -5,-2.8 1,-0.1 2,-0.4 -0.191 26.5-154.2 -54.4 144.3 1.6 -5.3 3.2 38 603 A K E +B 31 0A 60 -7,-0.3 -22,-3.0 -24,-0.2 -7,-0.3 -0.972 20.8 156.8-128.3 141.3 -0.2 -2.6 1.3 39 604 A C E -B 30 0A 0 -9,-3.7 -9,-3.9 -2,-0.4 -32,-0.2 -0.887 41.1 -79.0-148.6 178.1 0.1 1.2 1.5 40 605 A H > - 0 0 51 -2,-0.3 4,-1.0 -11,-0.2 -11,-0.1 -0.126 51.0 -96.5 -75.6 177.1 -0.4 4.5 -0.4 41 606 A E T 4 S+ 0 0 86 1,-0.2 4,-0.2 2,-0.2 -1,-0.1 0.867 126.1 29.6 -64.1 -38.1 1.9 5.8 -3.1 42 607 A K T >> S+ 0 0 160 1,-0.1 3,-1.7 2,-0.1 4,-1.2 0.815 112.2 63.3 -90.5 -36.3 3.7 8.1 -0.7 43 608 A C H 3> S+ 0 0 9 1,-0.3 4,-3.5 2,-0.2 -2,-0.2 0.720 84.8 79.7 -61.5 -19.9 3.2 6.0 2.5 44 609 A Q H 3< S+ 0 0 56 -4,-1.0 -1,-0.3 1,-0.2 -40,-0.1 0.849 102.5 35.5 -56.1 -34.1 5.3 3.3 0.7 45 610 A D H <4 S+ 0 0 127 -3,-1.7 -1,-0.2 -4,-0.2 -2,-0.2 0.800 117.2 52.5 -88.0 -33.8 8.3 5.3 1.8 46 611 A L H < S+ 0 0 112 -4,-1.2 -2,-0.2 2,-0.1 -3,-0.2 0.810 91.0 97.4 -71.3 -30.9 6.9 6.4 5.1 47 612 A L S < S- 0 0 23 -4,-3.5 2,-0.2 -5,-0.1 -30,-0.1 -0.177 86.4-101.2 -58.1 152.1 6.1 2.8 6.0 48 613 A N - 0 0 138 -47,-0.1 2,-0.3 1,-0.0 -46,-0.1 -0.519 33.7-135.2 -78.2 143.2 8.6 1.0 8.2 49 614 A A + 0 0 37 -2,-0.2 -1,-0.0 -48,-0.1 -4,-0.0 -0.723 42.2 141.8-100.3 149.7 11.0 -1.4 6.6 50 615 A D 0 0 146 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.091 360.0 360.0-176.5 39.7 11.9 -4.9 7.9 51 616 A C 0 0 69 -49,-0.0 -2,-0.0 -16,-0.0 -16,-0.0 -0.906 360.0 360.0-105.1 360.0 12.3 -7.3 4.9