==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YCZ . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5775.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 50 0, 0.0 55,-0.2 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.1 38.0 28.1 55.0 2 2 A K >> - 0 0 114 56,-0.4 4,-2.1 53,-0.4 3,-0.9 -0.285 360.0-127.6 -57.0 136.5 35.2 25.5 55.2 3 3 A E H 3> S+ 0 0 133 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.871 108.7 57.2 -55.8 -36.6 36.2 22.5 57.3 4 4 A K H 3> S+ 0 0 117 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.823 107.2 48.6 -66.4 -28.3 35.2 20.1 54.5 5 5 A I H <> S+ 0 0 2 -3,-0.9 4,-2.4 2,-0.2 -1,-0.2 0.900 109.6 50.7 -78.0 -41.1 37.7 21.8 52.2 6 6 A R H X S+ 0 0 97 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.930 111.9 49.4 -58.7 -44.3 40.5 21.8 54.8 7 7 A K H X S+ 0 0 129 -4,-2.6 4,-1.6 1,-0.2 -2,-0.2 0.925 110.0 50.1 -58.7 -45.6 39.8 18.0 55.1 8 8 A K H X S+ 0 0 81 -4,-1.9 4,-0.8 1,-0.2 -1,-0.2 0.877 110.2 50.9 -63.1 -41.0 39.8 17.5 51.4 9 9 A I H >< S+ 0 0 0 -4,-2.4 3,-0.8 1,-0.2 -1,-0.2 0.924 109.8 48.9 -60.6 -45.5 43.1 19.3 51.1 10 10 A L H 3< S+ 0 0 70 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.750 113.6 47.5 -70.3 -24.2 44.8 17.2 53.8 11 11 A L H 3< S+ 0 0 127 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.536 83.3 123.0 -89.6 -9.9 43.6 14.0 52.2 12 12 A A << - 0 0 13 -4,-0.8 -3,-0.0 -3,-0.8 2,-0.0 -0.218 63.6-114.7 -58.7 140.6 44.7 14.9 48.6 13 13 A P - 0 0 50 0, 0.0 24,-2.1 0, 0.0 2,-1.9 -0.314 18.4-110.7 -77.5 161.2 47.1 12.4 47.1 14 14 A E S S+ 0 0 117 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.477 83.5 112.0 -83.8 66.3 50.8 13.0 46.1 15 15 A E S S- 0 0 98 -2,-1.9 21,-2.9 53,-0.0 22,-0.1 -0.951 76.5 -92.3-141.4 153.9 49.8 12.8 42.5 16 16 A P + 0 0 17 0, 0.0 50,-2.1 0, 0.0 2,-0.3 -0.339 63.6 130.7 -65.6 148.3 49.6 15.1 39.4 17 17 A G E -AB 33 65A 0 16,-2.2 16,-2.4 48,-0.3 2,-0.4 -0.992 52.5-103.1-177.2 180.0 46.2 16.7 39.0 18 18 A V E -AB 32 64A 0 46,-2.3 46,-2.9 -2,-0.3 2,-0.4 -0.943 30.5-158.1-121.8 142.2 44.0 19.7 38.4 19 19 A Y E -AB 31 63A 1 12,-2.7 12,-2.4 -2,-0.4 2,-0.4 -0.947 4.8-163.5-126.6 149.8 42.0 21.3 41.2 20 20 A I E -AB 30 62A 8 42,-2.7 42,-2.8 -2,-0.4 2,-0.4 -0.956 5.5-159.1-135.5 109.7 38.9 23.5 41.0 21 21 A F E -AB 29 61A 0 8,-2.6 7,-3.2 -2,-0.4 8,-1.6 -0.769 25.8-174.3 -80.4 136.9 37.7 25.7 43.9 22 22 A K E -AB 27 60A 30 38,-2.8 37,-2.7 -2,-0.4 38,-1.4 -0.887 24.0-157.2-132.1 159.4 34.0 26.5 43.4 23 23 A N E > S-A 26 0A 30 3,-2.4 3,-1.9 -2,-0.3 35,-0.1 -0.969 82.9 -15.6-136.7 124.8 31.2 28.6 44.9 24 24 A K T 3 S- 0 0 169 -2,-0.4 -1,-0.1 1,-0.3 34,-0.0 0.893 131.6 -49.2 49.5 45.8 27.5 27.7 44.4 25 25 A G T 3 S+ 0 0 55 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.321 116.3 112.5 82.9 -7.2 28.5 25.3 41.5 26 26 A V E < S-A 23 0A 88 -3,-1.9 -3,-2.4 2,-0.0 -1,-0.2 -0.852 70.2-120.6-105.1 125.6 30.7 27.8 39.7 27 27 A P E +A 22 0A 14 0, 0.0 59,-0.6 0, 0.0 -5,-0.3 -0.451 30.5 175.2 -60.7 132.1 34.5 27.4 39.4 28 28 A I E + 0 0 6 -7,-3.2 59,-2.8 1,-0.4 2,-0.3 0.566 70.0 12.7-111.3 -19.6 36.2 30.4 41.0 29 29 A Y E -A 21 0A 39 -8,-1.6 -8,-2.6 57,-0.2 2,-0.4 -0.914 60.5-170.3-156.9 132.5 39.8 29.2 40.6 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.984 19.1 158.7-121.4 133.7 41.4 26.4 38.6 31 31 A G E -A 19 0A 1 -12,-2.4 -12,-2.7 -2,-0.4 2,-0.3 -0.881 27.2-131.0-141.5 173.7 45.0 25.3 39.0 32 32 A K E -A 18 0A 72 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.866 15.8-162.3-125.7 168.2 47.3 22.3 38.4 33 33 A A E -A 17 0A 9 -16,-2.4 -16,-2.2 -2,-0.3 3,-0.3 -0.997 30.0-149.3-149.8 141.7 49.8 20.4 40.5 34 34 A K S S+ 0 0 132 -2,-0.3 2,-0.4 1,-0.3 -1,-0.1 0.835 111.3 18.9 -70.6 -36.7 52.7 18.1 40.1 35 35 A R S > S- 0 0 118 1,-0.1 4,-2.2 -19,-0.1 -1,-0.3 -0.933 73.6-156.6-134.2 108.7 51.6 16.8 43.6 36 36 A L H > S+ 0 0 0 -21,-2.9 4,-2.9 -2,-0.4 5,-0.4 0.904 94.4 55.5 -50.0 -45.9 48.0 17.7 44.5 37 37 A S H > S+ 0 0 6 -24,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.932 110.8 42.6 -50.9 -56.0 48.9 17.3 48.3 38 38 A N H > S+ 0 0 96 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.910 117.9 44.2 -59.3 -48.4 51.8 19.8 48.2 39 39 A R H >< S+ 0 0 119 -4,-2.2 3,-0.6 1,-0.2 4,-0.4 0.926 115.2 46.7 -68.9 -44.5 50.1 22.4 46.1 40 40 A L H >< S+ 0 0 0 -4,-2.9 3,-1.6 -5,-0.3 4,-0.3 0.861 104.2 61.5 -68.6 -33.6 46.7 22.3 47.9 41 41 A R H >< S+ 0 0 115 -4,-2.1 3,-1.9 -5,-0.4 4,-0.5 0.821 90.9 69.8 -63.2 -25.9 48.4 22.5 51.3 42 42 A S G X< S+ 0 0 52 -4,-0.9 3,-0.9 -3,-0.6 -1,-0.3 0.793 88.6 64.6 -60.8 -25.5 49.8 25.8 50.3 43 43 A Y G < S+ 0 0 11 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.672 89.2 67.1 -71.6 -16.4 46.3 27.2 50.5 44 44 A L G < S+ 0 0 30 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.786 108.7 36.0 -75.6 -26.0 46.2 26.5 54.2 45 45 A N S < S- 0 0 122 -3,-0.9 -1,-0.3 -4,-0.5 2,-0.2 -0.812 94.6-144.0-125.1 85.0 48.9 29.2 54.8 46 46 A P - 0 0 59 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.324 18.8-172.1 -65.8 122.7 48.0 31.9 52.3 47 47 A Q S S+ 0 0 172 -5,-0.2 2,-0.3 -2,-0.2 -4,-0.1 0.669 73.8 28.7 -83.0 -18.3 51.1 33.6 50.9 48 48 A T S > S- 0 0 77 1,-0.1 4,-2.0 0, 0.0 5,-0.1 -0.922 81.2-113.2-137.9 161.8 48.9 36.2 49.1 49 49 A E H > S+ 0 0 132 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.870 117.5 56.4 -60.2 -39.4 45.6 38.0 49.5 50 50 A K H > S+ 0 0 72 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.921 106.1 49.0 -60.6 -43.7 44.3 36.2 46.4 51 51 A V H > S+ 0 0 28 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.910 111.1 51.5 -62.1 -40.2 45.1 32.8 47.9 52 52 A F H X S+ 0 0 97 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.969 110.9 47.5 -59.5 -50.3 43.3 33.9 51.1 53 53 A R H X S+ 0 0 125 -4,-2.8 4,-3.0 1,-0.2 3,-0.3 0.896 109.6 52.2 -56.8 -47.1 40.2 35.0 49.0 54 54 A I H X S+ 0 0 2 -4,-2.7 4,-1.9 1,-0.2 -1,-0.2 0.945 112.0 46.0 -55.4 -48.7 40.0 31.7 47.0 55 55 A G H < S+ 0 0 3 -4,-2.0 -53,-0.4 1,-0.2 -1,-0.2 0.722 117.5 43.1 -68.2 -25.3 40.1 29.6 50.2 56 56 A E H < S+ 0 0 94 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.827 114.5 47.3 -88.7 -37.8 37.5 31.7 52.0 57 57 A E H < S+ 0 0 54 -4,-3.0 -2,-0.2 -5,-0.2 -3,-0.2 0.828 90.9 97.3 -75.6 -30.8 35.0 32.2 49.1 58 58 A A < + 0 0 2 -4,-1.9 -56,-0.4 -5,-0.3 -35,-0.3 -0.254 42.2 179.8 -60.4 139.3 35.0 28.5 48.0 59 59 A D S S+ 0 0 38 -37,-2.7 2,-0.3 1,-0.3 -36,-0.2 0.323 75.4 29.1-111.6 2.7 32.2 26.2 49.3 60 60 A E E -B 22 0A 68 -38,-1.4 -38,-2.8 2,-0.0 2,-0.4 -0.985 59.8-158.4-157.7 145.2 33.6 23.2 47.3 61 61 A L E -B 21 0A 8 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.994 12.0-168.5-128.5 122.5 36.9 21.9 46.1 62 62 A E E -B 20 0A 67 -42,-2.8 -42,-2.7 -2,-0.4 2,-0.4 -0.906 4.0-165.1-105.8 138.6 37.0 19.4 43.3 63 63 A T E -B 19 0A 33 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.965 6.2-162.2-122.3 146.6 40.2 17.5 42.4 64 64 A I E -B 18 0A 48 -46,-2.9 -46,-2.3 -2,-0.4 2,-0.3 -0.976 12.1-147.3-126.9 114.2 40.9 15.6 39.2 65 65 A V E -B 17 0A 85 -2,-0.5 -48,-0.3 -48,-0.2 2,-0.2 -0.649 23.1-163.7 -77.7 133.4 43.8 13.1 39.3 66 66 A V - 0 0 10 -50,-2.1 3,-0.1 -2,-0.3 6,-0.0 -0.695 29.9-110.3-120.1 171.1 45.5 12.9 35.9 67 67 A M S S- 0 0 154 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.880 87.3 -29.7 -69.4 -36.7 47.9 10.4 34.2 68 68 A N S > S- 0 0 73 -53,-0.1 4,-1.9 1,-0.0 3,-0.2 -0.944 73.7 -77.0-169.0 178.6 51.0 12.7 34.3 69 69 A E H > S+ 0 0 103 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.778 122.5 60.2 -68.4 -28.1 52.1 16.3 34.2 70 70 A R H > S+ 0 0 208 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.931 107.3 45.9 -63.5 -43.7 51.5 16.6 30.4 71 71 A E H > S+ 0 0 64 -3,-0.2 4,-2.8 1,-0.2 5,-0.3 0.895 110.1 53.9 -65.5 -40.5 47.8 15.8 31.0 72 72 A A H X S+ 0 0 3 -4,-1.9 4,-2.4 1,-0.2 5,-0.3 0.915 106.7 53.6 -56.8 -42.1 47.7 18.3 33.9 73 73 A F H X S+ 0 0 138 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.939 116.0 35.4 -60.9 -51.2 49.1 21.0 31.6 74 74 A I H X S+ 0 0 91 -4,-1.8 4,-2.8 2,-0.2 5,-0.2 0.883 116.6 52.8 -75.0 -37.7 46.4 20.7 28.9 75 75 A L H X S+ 0 0 37 -4,-2.8 4,-2.7 -5,-0.2 5,-0.3 0.947 110.9 48.3 -63.8 -44.3 43.5 19.8 31.2 76 76 A E H X S+ 0 0 37 -4,-2.4 4,-2.5 -5,-0.3 5,-0.2 0.949 112.9 47.3 -59.7 -48.2 44.2 22.9 33.2 77 77 A A H X S+ 0 0 25 -4,-1.9 4,-2.4 -5,-0.3 -1,-0.2 0.930 113.4 49.4 -57.9 -46.2 44.4 25.2 30.1 78 78 A N H X S+ 0 0 83 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.907 112.4 46.0 -60.8 -44.1 41.2 23.7 28.7 79 79 A L H X S+ 0 0 24 -4,-2.7 4,-2.7 2,-0.2 5,-0.3 0.887 111.5 51.5 -71.8 -34.4 39.2 24.1 31.9 80 80 A I H X S+ 0 0 26 -4,-2.5 4,-2.7 -5,-0.3 -1,-0.2 0.941 111.6 48.0 -65.5 -44.5 40.4 27.7 32.4 81 81 A K H < S+ 0 0 124 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.903 115.6 45.9 -60.6 -39.4 39.4 28.5 28.8 82 82 A K H < S+ 0 0 139 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.921 126.6 24.4 -70.1 -45.1 36.0 26.9 29.3 83 83 A Y H < S- 0 0 109 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.634 77.8-154.2 -99.7 -19.0 35.1 28.4 32.7 84 84 A R < - 0 0 167 -4,-2.7 -4,-0.1 -5,-0.3 -3,-0.1 0.917 28.7-146.1 38.5 62.4 37.1 31.7 32.9 85 85 A P > - 0 0 5 0, 0.0 3,-2.1 0, 0.0 -57,-0.2 -0.273 15.2-111.7 -67.9 151.3 37.1 31.5 36.7 86 86 A K T 3 S+ 0 0 130 -59,-0.6 -57,-0.2 1,-0.3 -58,-0.1 0.748 113.6 39.4 -43.6 -48.1 36.9 34.7 38.7 87 87 A Y T 3 S+ 0 0 34 -59,-2.8 2,-0.4 2,-0.0 -1,-0.3 0.384 91.8 98.8 -94.4 1.5 40.5 34.4 40.2 88 88 A N < 0 0 28 -3,-2.1 -57,-0.0 -60,-0.2 -59,-0.0 -0.755 360.0 360.0 -88.6 139.1 42.3 33.1 37.1 89 89 A V 0 0 161 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.067 360.0 360.0 -92.0 360.0 44.1 35.8 35.2