==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD3 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6178.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 35.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 56 0, 0.0 55,-0.1 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.5 38.5 28.3 56.6 2 2 A K >> - 0 0 109 53,-0.4 4,-1.8 56,-0.4 3,-0.5 -0.293 360.0-125.8 -57.5 141.7 35.7 25.6 56.8 3 3 A E H 3> S+ 0 0 136 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.866 108.8 57.2 -61.7 -37.8 36.8 22.5 58.9 4 4 A K H 3> S+ 0 0 140 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.838 106.8 49.5 -63.3 -33.1 35.9 20.1 56.1 5 5 A I H <> S+ 0 0 3 -3,-0.5 4,-2.4 2,-0.2 -1,-0.2 0.905 108.7 51.5 -71.9 -43.3 38.3 21.9 53.7 6 6 A R H X S+ 0 0 99 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.926 111.2 49.4 -57.0 -45.2 41.2 21.9 56.2 7 7 A K H X S+ 0 0 134 -4,-2.2 4,-1.5 2,-0.2 -2,-0.2 0.926 109.9 50.2 -60.0 -45.6 40.6 18.1 56.6 8 8 A K H X S+ 0 0 94 -4,-1.9 4,-0.8 1,-0.2 -1,-0.2 0.901 109.4 52.0 -61.7 -42.1 40.6 17.5 52.8 9 9 A I H >< S+ 0 0 0 -4,-2.4 3,-0.8 1,-0.2 -1,-0.2 0.933 108.9 49.4 -57.3 -46.8 43.9 19.5 52.5 10 10 A L H 3< S+ 0 0 76 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.754 111.9 49.5 -69.6 -23.8 45.7 17.4 55.2 11 11 A L H 3< S+ 0 0 130 -4,-1.5 -1,-0.2 -3,-0.2 -2,-0.2 0.562 82.1 121.9 -86.0 -12.1 44.5 14.1 53.5 12 12 A A << - 0 0 15 -4,-0.8 29,-0.0 -3,-0.8 -3,-0.0 -0.225 61.8-117.4 -59.7 141.1 45.7 15.0 50.0 13 13 A P - 0 0 55 0, 0.0 24,-1.8 0, 0.0 2,-1.7 -0.282 17.0-109.7 -79.4 162.8 48.3 12.6 48.4 14 14 A E S S+ 0 0 117 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.464 83.8 109.8 -82.4 64.6 51.9 13.1 47.2 15 15 A E S S- 0 0 101 -2,-1.7 21,-2.5 53,-0.0 22,-0.1 -0.951 76.4 -91.9-142.0 152.1 50.8 12.8 43.6 16 16 A P + 0 0 19 0, 0.0 50,-1.9 0, 0.0 2,-0.3 -0.338 62.8 126.5 -67.3 148.0 50.4 15.2 40.5 17 17 A G E -AB 33 65A 0 16,-1.9 16,-2.0 48,-0.3 2,-0.3 -0.991 52.6-100.4-178.2-179.5 47.0 16.8 40.0 18 18 A V E -AB 32 64A 0 46,-2.2 46,-2.5 -2,-0.3 2,-0.3 -0.950 30.6-158.3-123.9 140.9 44.6 19.8 39.5 19 19 A Y E -AB 31 63A 8 12,-2.4 12,-2.0 -2,-0.3 2,-0.4 -0.944 4.6-162.4-127.0 149.6 42.6 21.4 42.3 20 20 A I E -AB 30 62A 8 42,-2.6 42,-2.5 -2,-0.3 2,-0.4 -0.956 5.3-158.6-136.0 109.2 39.4 23.6 42.3 21 21 A F E -AB 29 61A 0 8,-2.4 7,-2.7 -2,-0.4 8,-1.5 -0.766 25.6-173.6 -82.2 136.2 38.1 25.9 45.2 22 22 A K E -AB 27 60A 41 38,-2.5 37,-2.4 -2,-0.4 38,-1.3 -0.889 23.7-160.7-130.5 156.0 34.3 26.6 44.8 23 23 A N E > S-A 26 0A 37 3,-2.1 3,-1.9 -2,-0.3 35,-0.1 -0.978 83.1 -13.7-136.3 127.3 31.5 28.7 46.3 24 24 A K T 3 S- 0 0 172 -2,-0.3 -1,-0.0 1,-0.3 34,-0.0 0.863 130.7 -51.7 48.7 43.3 27.8 27.8 45.8 25 25 A G T 3 S+ 0 0 49 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.362 115.4 113.1 81.3 -2.0 28.8 25.4 42.9 26 26 A V E < S-A 23 0A 91 -3,-1.9 -3,-2.1 2,-0.0 -1,-0.2 -0.875 70.3-118.6-107.3 124.1 30.9 28.0 41.0 27 27 A P E +A 22 0A 16 0, 0.0 59,-0.5 0, 0.0 -5,-0.3 -0.461 31.7 173.5 -56.7 129.5 34.8 27.7 40.6 28 28 A I E + 0 0 7 -7,-2.7 59,-2.3 1,-0.3 2,-0.3 0.585 69.1 13.3-109.5 -21.9 36.6 30.7 42.3 29 29 A Y E -A 21 0A 44 -8,-1.5 -8,-2.4 57,-0.1 2,-0.4 -0.902 59.3-170.4-156.3 133.5 40.3 29.4 41.8 30 30 A I E +A 20 0A 0 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.976 18.6 158.3-123.0 132.1 41.9 26.6 39.8 31 31 A G E -A 19 0A 1 -12,-2.0 -12,-2.4 -2,-0.4 2,-0.3 -0.899 26.3-131.6-141.3 173.1 45.6 25.5 40.2 32 32 A K E -A 18 0A 76 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.831 15.6-165.2-125.9 166.5 48.0 22.6 39.5 33 33 A A E -A 17 0A 8 -16,-2.0 -16,-1.9 -2,-0.3 3,-0.3 -0.995 31.6-148.3-150.9 143.3 50.7 20.7 41.6 34 34 A K S S+ 0 0 129 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.831 111.8 18.8 -70.5 -38.2 53.6 18.2 41.2 35 35 A R S >> S- 0 0 121 1,-0.1 4,-1.8 -19,-0.1 3,-0.5 -0.943 74.3-154.8-130.6 111.5 52.5 17.0 44.6 36 36 A L H 3> S+ 0 0 0 -21,-2.5 4,-2.5 -2,-0.4 5,-0.3 0.887 94.4 58.5 -51.0 -42.9 48.9 17.9 45.7 37 37 A S H 3> S+ 0 0 8 -24,-1.8 4,-2.1 1,-0.2 -1,-0.2 0.908 107.1 45.7 -51.8 -48.0 49.9 17.7 49.4 38 38 A N H <> S+ 0 0 99 -3,-0.5 4,-1.1 2,-0.2 -1,-0.2 0.944 116.2 42.2 -68.3 -48.5 52.6 20.3 49.1 39 39 A R H < S+ 0 0 137 -4,-1.8 4,-0.4 1,-0.2 3,-0.2 0.907 116.6 47.5 -68.0 -40.8 50.7 22.9 47.2 40 40 A L H >< S+ 0 0 0 -4,-2.5 3,-1.6 -5,-0.3 4,-0.3 0.902 105.3 58.3 -70.1 -38.3 47.5 22.6 49.1 41 41 A R H >X S+ 0 0 122 -4,-2.1 3,-1.9 -5,-0.3 4,-0.5 0.824 93.3 69.9 -59.6 -29.7 49.2 22.7 52.6 42 42 A S G >< S+ 0 0 60 -4,-1.1 3,-0.5 1,-0.3 5,-0.3 0.757 87.7 65.2 -58.8 -24.9 50.6 26.2 51.6 43 43 A F G <4 S+ 0 0 15 -3,-1.6 -1,-0.3 -4,-0.4 -2,-0.2 0.676 88.7 68.6 -69.9 -18.2 47.0 27.5 51.8 44 44 A L G <4 S+ 0 0 32 -3,-1.9 -1,-0.2 -4,-0.3 -2,-0.2 0.820 108.0 34.1 -72.7 -32.0 47.0 26.8 55.6 45 45 A N S << S- 0 0 130 -3,-0.5 -1,-0.3 -4,-0.5 2,-0.2 -0.855 95.2-142.1-121.2 88.4 49.6 29.6 56.4 46 46 A P - 0 0 61 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.373 22.0-175.0 -67.8 123.1 48.8 32.3 53.8 47 47 A Q S S+ 0 0 177 -5,-0.3 2,-0.3 -2,-0.2 -4,-0.1 0.596 73.5 32.5 -85.1 -15.4 51.8 34.2 52.3 48 48 A T S > S- 0 0 68 1,-0.1 4,-1.9 0, 0.0 5,-0.1 -0.951 79.9-117.1-138.0 158.3 49.6 36.7 50.3 49 49 A E H > S+ 0 0 137 -2,-0.3 4,-2.6 2,-0.2 5,-0.2 0.851 115.4 57.5 -62.8 -35.0 46.2 38.4 50.7 50 50 A K H > S+ 0 0 79 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.936 105.9 48.8 -62.0 -46.0 44.9 36.5 47.6 51 51 A V H > S+ 0 0 32 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.909 110.9 51.7 -60.5 -42.6 45.7 33.1 49.2 52 52 A F H X S+ 0 0 111 -4,-1.9 4,-1.4 1,-0.2 -2,-0.2 0.967 110.9 47.5 -55.6 -52.6 43.9 34.3 52.4 53 53 A R H X S+ 0 0 135 -4,-2.6 4,-2.6 1,-0.2 3,-0.4 0.902 109.2 52.7 -55.8 -48.2 40.7 35.3 50.4 54 54 A I H X S+ 0 0 2 -4,-2.5 4,-1.6 1,-0.2 -1,-0.2 0.936 111.4 46.4 -57.0 -46.8 40.5 32.1 48.4 55 55 A G H < S+ 0 0 3 -4,-1.8 -53,-0.4 -5,-0.2 -1,-0.2 0.718 116.4 44.2 -71.2 -23.7 40.6 29.9 51.6 56 56 A E H < S+ 0 0 102 -4,-1.4 -2,-0.2 -3,-0.4 -1,-0.2 0.829 113.9 47.3 -86.8 -37.4 38.0 32.0 53.5 57 57 A E H < S+ 0 0 60 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.1 0.795 91.4 97.8 -75.0 -30.8 35.4 32.5 50.6 58 58 A A < + 0 0 2 -4,-1.6 -56,-0.4 -5,-0.3 -35,-0.3 -0.284 42.0 180.0 -62.7 142.2 35.4 28.8 49.5 59 59 A D S S+ 0 0 44 -37,-2.4 2,-0.3 1,-0.2 -36,-0.2 0.324 74.3 29.1-113.1 3.6 32.6 26.4 50.7 60 60 A E E -B 22 0A 77 -38,-1.3 -38,-2.5 2,-0.0 2,-0.4 -0.980 58.7-157.0-160.2 145.9 34.0 23.3 48.8 61 61 A L E -B 21 0A 14 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.992 11.6-169.8-129.0 121.5 37.4 21.9 47.5 62 62 A E E -B 20 0A 73 -42,-2.5 -42,-2.6 -2,-0.4 2,-0.3 -0.895 4.4-164.9-105.5 139.0 37.6 19.4 44.6 63 63 A T E -B 19 0A 38 -2,-0.4 2,-0.4 -44,-0.2 -44,-0.2 -0.960 6.6-163.0-123.1 146.4 40.8 17.5 43.6 64 64 A I E -B 18 0A 50 -46,-2.5 -46,-2.2 -2,-0.3 2,-0.3 -0.973 11.8-148.6-128.1 111.8 41.6 15.6 40.4 65 65 A V E -B 17 0A 88 -2,-0.4 -48,-0.3 -48,-0.2 2,-0.2 -0.655 23.1-164.2 -78.0 133.2 44.6 13.1 40.5 66 66 A V - 0 0 13 -50,-1.9 3,-0.1 -2,-0.3 -1,-0.0 -0.658 30.0-109.1-118.1 172.6 46.3 12.9 37.0 67 67 A M S S- 0 0 154 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.891 86.6 -31.8 -69.3 -40.7 48.8 10.5 35.1 68 68 A N S > S- 0 0 75 -53,-0.1 4,-1.8 1,-0.0 3,-0.2 -0.935 72.7 -74.7-167.5 178.2 51.8 12.9 35.1 69 69 A E H > S+ 0 0 108 -2,-0.3 4,-1.8 1,-0.2 -52,-0.0 0.775 122.6 58.2 -64.9 -29.8 53.0 16.5 35.0 70 70 A R H > S+ 0 0 214 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.914 107.0 47.0 -65.5 -44.5 52.3 16.9 31.3 71 71 A E H > S+ 0 0 68 -3,-0.2 4,-2.7 1,-0.2 5,-0.3 0.903 109.5 55.1 -64.1 -39.9 48.6 16.0 31.9 72 72 A A H X S+ 0 0 3 -4,-1.8 4,-2.2 1,-0.2 5,-0.2 0.912 105.7 53.2 -56.9 -42.6 48.5 18.5 34.8 73 73 A F H X S+ 0 0 138 -4,-1.8 4,-1.8 1,-0.2 -1,-0.2 0.945 115.6 36.4 -60.4 -52.1 49.7 21.4 32.5 74 74 A I H X S+ 0 0 99 -4,-1.6 4,-2.4 2,-0.2 5,-0.2 0.883 115.8 52.5 -73.7 -37.9 47.1 20.9 29.8 75 75 A L H X S+ 0 0 40 -4,-2.7 4,-2.4 -5,-0.2 5,-0.2 0.938 110.4 49.1 -64.2 -44.0 44.1 20.0 32.1 76 76 A E H X S+ 0 0 41 -4,-2.2 4,-2.2 -5,-0.3 5,-0.2 0.939 112.4 47.9 -59.3 -48.2 44.7 23.2 34.3 77 77 A A H X S+ 0 0 33 -4,-1.8 4,-1.9 -5,-0.2 -1,-0.2 0.921 112.6 49.0 -59.5 -44.3 44.9 25.4 31.2 78 78 A N H X S+ 0 0 85 -4,-2.4 4,-2.0 1,-0.2 -1,-0.2 0.888 111.7 47.7 -62.5 -43.0 41.7 23.9 29.7 79 79 A L H X S+ 0 0 26 -4,-2.4 4,-2.4 2,-0.2 5,-0.3 0.875 109.7 52.4 -71.3 -35.7 39.7 24.3 32.9 80 80 A I H X S+ 0 0 27 -4,-2.2 4,-2.3 -5,-0.2 -1,-0.2 0.914 111.4 48.0 -62.1 -42.2 40.8 28.0 33.5 81 81 A K H < S+ 0 0 128 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.890 114.3 46.8 -65.2 -40.0 39.6 28.8 29.9 82 82 A K H < S+ 0 0 146 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.921 126.6 23.6 -66.8 -46.2 36.3 27.0 30.4 83 83 A Y H < S- 0 0 106 -4,-2.4 -2,-0.2 -5,-0.1 -3,-0.2 0.626 78.6-152.9-102.3 -17.5 35.3 28.5 33.8 84 84 A R < - 0 0 115 -4,-2.3 -4,-0.1 -5,-0.3 -3,-0.1 0.902 25.6-148.3 37.5 62.6 37.3 31.9 34.0 85 85 A P > - 0 0 2 0, 0.0 3,-1.8 0, 0.0 -57,-0.2 -0.254 15.6-116.0 -65.4 147.9 37.4 31.8 37.9 86 86 A K T 3 S+ 0 0 121 -59,-0.5 -57,-0.1 1,-0.3 -58,-0.1 0.758 111.8 45.1 -54.0 -34.0 37.4 35.1 39.8 87 87 A Y T 3 S+ 0 0 38 -59,-2.3 2,-0.4 2,-0.1 -1,-0.3 0.434 93.9 91.8 -95.2 0.5 40.9 34.8 41.4 88 88 A N S < S- 0 0 18 -3,-1.8 -57,-0.0 -60,-0.2 2,-0.0 -0.763 83.0-112.4 -92.1 140.8 42.7 33.5 38.2 89 89 A V 0 0 123 -2,-0.4 -2,-0.1 1,-0.1 -5,-0.1 -0.351 360.0 360.0 -73.7 150.7 44.3 36.2 36.0 90 90 A R 0 0 209 -6,-0.1 -1,-0.1 -2,-0.0 -6,-0.0 -0.055 360.0 360.0-116.6 360.0 42.8 36.9 32.5