==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 23-DEC-04 1YD5 . COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR J.J.TRUGLIO,B.RHAU,D.L.CROTEAU,L.WANG,M.SKORVAGA,E.KARAKAS, . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5896.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 51 0, 0.0 55,-0.2 0, 0.0 58,-0.1 0.000 360.0 360.0 360.0 138.3 38.1 28.2 55.1 2 2 A K >> - 0 0 108 53,-0.4 4,-2.1 56,-0.4 3,-0.9 -0.288 360.0-127.4 -55.8 135.5 35.3 25.5 55.3 3 3 A E H 3> S+ 0 0 126 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.879 108.9 56.5 -57.6 -35.5 36.4 22.6 57.5 4 4 A K H 3> S+ 0 0 134 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.815 106.8 49.9 -66.8 -28.6 35.5 20.1 54.7 5 5 A I H <> S+ 0 0 2 -3,-0.9 4,-2.7 2,-0.2 -1,-0.2 0.918 109.6 49.7 -75.2 -43.7 37.8 21.9 52.3 6 6 A R H X S+ 0 0 98 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.928 111.6 50.5 -56.1 -45.4 40.6 21.8 54.8 7 7 A K H X S+ 0 0 133 -4,-2.6 4,-1.5 1,-0.2 -2,-0.2 0.922 110.3 48.3 -59.1 -44.6 39.9 18.1 55.3 8 8 A K H X S+ 0 0 87 -4,-1.9 4,-0.7 1,-0.2 -1,-0.2 0.885 110.8 51.9 -64.2 -41.1 40.0 17.5 51.5 9 9 A I H >< S+ 0 0 0 -4,-2.7 3,-1.1 1,-0.2 -1,-0.2 0.951 109.8 48.3 -57.3 -47.5 43.3 19.4 51.2 10 10 A L H 3< S+ 0 0 70 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.764 113.7 47.7 -70.1 -24.2 44.9 17.4 53.9 11 11 A L H 3< S+ 0 0 127 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.516 82.9 123.5 -89.2 -4.8 43.7 14.1 52.3 12 12 A A << - 0 0 12 -3,-1.1 29,-0.0 -4,-0.7 -3,-0.0 -0.266 62.5-115.5 -66.2 141.9 44.9 15.1 48.8 13 13 A P - 0 0 49 0, 0.0 24,-1.9 0, 0.0 2,-1.8 -0.294 18.0-110.0 -77.9 160.7 47.3 12.6 47.2 14 14 A E S S+ 0 0 119 22,-0.2 21,-0.1 21,-0.2 -2,-0.0 -0.506 84.5 109.4 -82.6 66.0 50.9 13.0 46.2 15 15 A E S S- 0 0 100 -2,-1.8 21,-2.8 53,-0.0 22,-0.1 -0.964 77.2 -91.8-142.2 153.5 49.9 12.8 42.6 16 16 A P + 0 0 19 0, 0.0 50,-2.1 0, 0.0 2,-0.3 -0.372 62.3 130.4 -66.0 151.6 49.6 15.2 39.6 17 17 A G E -AB 33 65A 0 16,-2.1 16,-2.5 48,-0.3 2,-0.4 -0.988 52.4-100.7-179.4 177.6 46.2 16.8 39.1 18 18 A V E -AB 32 64A 0 46,-2.3 46,-2.9 -2,-0.3 2,-0.4 -0.951 30.8-156.8-120.1 140.2 44.0 19.7 38.5 19 19 A Y E -AB 31 63A 1 12,-2.7 12,-2.3 -2,-0.4 2,-0.4 -0.935 5.0-165.0-124.4 145.2 42.1 21.4 41.3 20 20 A I E -AB 30 62A 8 42,-2.7 42,-2.8 -2,-0.4 2,-0.4 -0.945 6.0-159.6-133.2 111.4 38.9 23.6 41.2 21 21 A F E -AB 29 61A 0 8,-2.4 7,-3.0 -2,-0.4 8,-1.6 -0.761 25.3-173.7 -83.7 135.1 37.7 25.8 44.0 22 22 A K E -AB 27 60A 38 38,-2.7 37,-2.7 -2,-0.4 38,-1.4 -0.889 23.0-159.7-129.6 158.7 34.0 26.5 43.5 23 23 A N E > S-A 26 0A 39 3,-2.4 3,-1.9 -2,-0.3 35,-0.1 -0.973 82.2 -13.8-140.0 124.8 31.2 28.6 45.0 24 24 A K T 3 S- 0 0 176 -2,-0.4 -1,-0.1 1,-0.3 34,-0.0 0.883 131.7 -50.2 49.6 45.8 27.5 27.7 44.5 25 25 A G T 3 S+ 0 0 48 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.387 116.5 112.2 81.6 -4.2 28.5 25.3 41.8 26 26 A V E < -A 23 0A 86 -3,-1.9 -3,-2.4 59,-0.0 -1,-0.2 -0.889 69.9-120.4-108.0 125.3 30.7 27.8 39.9 27 27 A P E +A 22 0A 12 0, 0.0 59,-0.6 0, 0.0 -5,-0.3 -0.447 29.9 175.3 -61.4 128.4 34.5 27.5 39.6 28 28 A I E S+ 0 0 7 -7,-3.0 59,-2.6 1,-0.4 2,-0.3 0.574 70.5 13.5-107.5 -19.7 36.3 30.5 41.1 29 29 A Y E -A 21 0A 43 -8,-1.6 -8,-2.4 57,-0.1 2,-0.4 -0.928 60.2-170.7-157.1 138.1 39.8 29.2 40.6 30 30 A I E +A 20 0A 2 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.997 18.8 160.3-129.0 132.1 41.4 26.4 38.7 31 31 A G E -A 19 0A 1 -12,-2.3 -12,-2.7 -2,-0.4 2,-0.3 -0.859 27.0-129.2-140.9 170.1 45.0 25.3 39.1 32 32 A K E -A 18 0A 74 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.877 16.7-163.8-120.7 164.0 47.4 22.4 38.4 33 33 A A E -A 17 0A 11 -16,-2.5 -16,-2.1 -2,-0.3 3,-0.3 -0.999 30.1-151.2-145.4 143.8 49.8 20.5 40.6 34 34 A K S S+ 0 0 130 -2,-0.3 2,-0.4 1,-0.3 -1,-0.1 0.840 110.3 18.1 -72.6 -38.1 52.7 18.2 40.2 35 35 A R S > S- 0 0 109 1,-0.1 4,-2.3 -19,-0.1 -1,-0.3 -0.941 72.6-157.2-131.4 110.8 51.6 16.9 43.6 36 36 A L H > S+ 0 0 0 -21,-2.8 4,-2.9 -2,-0.4 5,-0.4 0.892 93.9 57.5 -53.3 -43.6 48.1 17.9 44.7 37 37 A S H > S+ 0 0 6 -24,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.942 110.1 41.4 -50.2 -54.0 49.1 17.4 48.3 38 38 A N H > S+ 0 0 93 1,-0.2 4,-0.9 2,-0.2 -2,-0.2 0.926 118.4 44.4 -66.4 -47.4 51.9 20.0 48.2 39 39 A R H >< S+ 0 0 106 -4,-2.3 3,-0.6 1,-0.2 4,-0.5 0.928 115.0 46.5 -66.7 -45.7 50.1 22.5 46.1 40 40 A L H >< S+ 0 0 0 -4,-2.9 3,-1.6 -5,-0.3 4,-0.3 0.877 104.8 60.7 -67.2 -34.5 46.8 22.4 48.0 41 41 A R H >< S+ 0 0 115 -4,-2.1 3,-1.7 -5,-0.4 4,-0.5 0.810 91.7 69.4 -64.0 -24.0 48.5 22.6 51.4 42 42 A S G X< S+ 0 0 47 -4,-0.9 3,-0.9 -3,-0.6 -1,-0.3 0.806 88.2 65.7 -63.6 -25.4 49.9 26.0 50.3 43 43 A Y G < S+ 0 0 10 -3,-1.6 -1,-0.3 -4,-0.5 -2,-0.2 0.678 89.5 65.6 -68.6 -17.7 46.4 27.3 50.5 44 44 A L G < S+ 0 0 29 -3,-1.7 -1,-0.2 -4,-0.3 -2,-0.2 0.766 108.6 37.7 -77.5 -24.3 46.3 26.7 54.3 45 45 A N S < S- 0 0 118 -3,-0.9 -1,-0.3 -4,-0.5 2,-0.2 -0.786 94.4-145.7-124.3 82.7 49.1 29.3 54.8 46 46 A P - 0 0 57 0, 0.0 -3,-0.1 0, 0.0 -4,-0.0 -0.321 19.5-173.3 -67.5 122.4 48.2 32.0 52.3 47 47 A Q S S+ 0 0 169 -5,-0.2 2,-0.3 -2,-0.2 -4,-0.1 0.628 72.6 30.4 -85.4 -15.4 51.1 33.8 50.8 48 48 A T S > S- 0 0 76 1,-0.1 4,-2.0 0, 0.0 5,-0.1 -0.947 80.5-114.5-138.2 159.5 49.0 36.3 49.0 49 49 A E H > S+ 0 0 129 -2,-0.3 4,-2.8 2,-0.2 5,-0.2 0.875 116.4 56.4 -58.5 -38.6 45.6 38.1 49.4 50 50 A K H > S+ 0 0 69 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.934 106.1 49.3 -62.4 -43.1 44.3 36.3 46.4 51 51 A V H > S+ 0 0 28 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.908 110.5 51.5 -60.7 -41.7 45.1 32.9 47.9 52 52 A F H X S+ 0 0 96 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.972 111.4 47.5 -57.0 -50.6 43.4 34.0 51.1 53 53 A R H X S+ 0 0 121 -4,-2.8 4,-2.8 1,-0.2 3,-0.3 0.893 108.7 52.8 -57.9 -50.8 40.3 35.1 49.1 54 54 A I H X S+ 0 0 3 -4,-2.8 4,-1.8 1,-0.2 -1,-0.2 0.948 112.7 45.2 -52.3 -47.4 40.1 31.9 47.1 55 55 A G H < S+ 0 0 3 -4,-2.0 -53,-0.4 1,-0.2 -1,-0.2 0.728 117.0 44.3 -70.6 -25.1 40.2 29.7 50.2 56 56 A E H < S+ 0 0 100 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.817 114.8 46.7 -87.7 -35.2 37.6 31.8 52.1 57 57 A E H < S+ 0 0 53 -4,-2.8 -2,-0.2 -5,-0.2 -3,-0.2 0.819 91.5 96.4 -78.8 -30.5 35.1 32.3 49.3 58 58 A A < - 0 0 2 -4,-1.8 -56,-0.4 -5,-0.3 -35,-0.3 -0.271 43.6-177.9 -61.3 142.6 35.0 28.6 48.2 59 59 A D S S+ 0 0 37 -37,-2.7 2,-0.3 1,-0.3 -36,-0.2 0.308 75.0 27.4-112.1 2.2 32.3 26.3 49.4 60 60 A E E -B 22 0A 71 -38,-1.4 -38,-2.7 2,-0.0 2,-0.4 -0.975 59.4-156.1-159.9 147.4 33.7 23.3 47.6 61 61 A L E -B 21 0A 12 -2,-0.3 2,-0.4 -40,-0.2 -40,-0.2 -0.996 12.4-169.5-130.0 122.6 36.9 21.9 46.3 62 62 A E E -B 20 0A 71 -42,-2.8 -42,-2.7 -2,-0.4 2,-0.4 -0.899 4.0-165.6-105.8 141.2 37.1 19.4 43.4 63 63 A T E -B 19 0A 32 -2,-0.4 2,-0.5 -44,-0.2 -44,-0.2 -0.970 7.4-162.5-124.8 146.6 40.2 17.6 42.5 64 64 A I E -B 18 0A 48 -46,-2.9 -46,-2.3 -2,-0.4 2,-0.4 -0.980 12.9-147.3-125.7 113.9 41.0 15.6 39.4 65 65 A V E -B 17 0A 83 -2,-0.5 -48,-0.3 -48,-0.2 2,-0.2 -0.662 23.6-162.6 -79.3 135.0 43.9 13.2 39.5 66 66 A V - 0 0 10 -50,-2.1 3,-0.1 -2,-0.4 -1,-0.0 -0.673 29.5-110.5-119.7 170.5 45.6 13.0 36.0 67 67 A M S S- 0 0 152 -2,-0.2 2,-0.3 1,-0.2 -1,-0.1 0.879 87.3 -29.4 -67.8 -38.1 47.9 10.6 34.3 68 68 A N S > S- 0 0 72 -53,-0.1 4,-1.8 1,-0.0 3,-0.2 -0.945 72.5 -77.8-170.5 175.4 50.9 12.9 34.2 69 69 A E H > S+ 0 0 106 -2,-0.3 4,-2.1 1,-0.2 5,-0.1 0.773 122.6 58.9 -67.2 -29.1 52.1 16.5 34.1 70 70 A R H > S+ 0 0 208 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.919 107.5 46.6 -64.0 -43.9 51.4 16.8 30.4 71 71 A E H > S+ 0 0 64 -3,-0.2 4,-2.9 1,-0.2 5,-0.3 0.885 109.9 54.3 -62.5 -42.1 47.8 15.9 31.0 72 72 A A H X S+ 0 0 2 -4,-1.8 4,-2.4 1,-0.2 5,-0.3 0.912 106.8 52.9 -56.3 -42.3 47.7 18.4 33.9 73 73 A F H X S+ 0 0 138 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.936 116.2 35.7 -60.6 -54.4 48.9 21.2 31.6 74 74 A I H X S+ 0 0 96 -4,-1.8 4,-2.5 2,-0.2 -1,-0.2 0.881 116.5 52.6 -74.0 -36.1 46.3 20.7 28.9 75 75 A L H X S+ 0 0 37 -4,-2.9 4,-2.7 -5,-0.2 5,-0.2 0.946 111.3 48.0 -64.9 -44.2 43.4 19.9 31.3 76 76 A E H X S+ 0 0 38 -4,-2.4 4,-2.4 -5,-0.3 5,-0.2 0.943 112.4 48.2 -59.9 -49.5 44.0 23.0 33.3 77 77 A A H X S+ 0 0 26 -4,-1.9 4,-2.2 -5,-0.3 -1,-0.2 0.924 113.1 48.3 -56.3 -45.0 44.2 25.2 30.2 78 78 A N H X S+ 0 0 87 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.905 111.8 48.1 -65.5 -42.8 41.0 23.7 28.8 79 79 A L H X S+ 0 0 25 -4,-2.7 4,-2.7 2,-0.2 5,-0.3 0.875 110.5 51.6 -68.6 -36.6 39.1 24.1 32.0 80 80 A I H X S+ 0 0 33 -4,-2.4 4,-2.6 -5,-0.2 -1,-0.2 0.926 111.5 47.9 -64.1 -43.1 40.2 27.7 32.5 81 81 A K H < S+ 0 0 125 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.909 115.1 46.6 -63.4 -38.7 39.1 28.5 28.9 82 82 A K H < S+ 0 0 145 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.931 126.3 24.4 -68.2 -46.3 35.8 26.8 29.5 83 83 A Y H < S- 0 0 100 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.625 79.8-150.1-101.2 -19.1 34.9 28.3 32.8 84 84 A R < - 0 0 122 -4,-2.6 -4,-0.1 -5,-0.3 -3,-0.1 0.915 28.0-141.8 44.1 62.4 36.8 31.6 32.9 85 85 A P > - 0 0 1 0, 0.0 3,-2.2 0, 0.0 -57,-0.2 -0.152 11.4-119.7 -61.4 145.9 37.1 31.5 36.8 86 86 A K T 3 S+ 0 0 117 -59,-0.6 -57,-0.1 1,-0.3 -58,-0.1 0.817 113.4 45.0 -57.4 -34.3 36.8 34.8 38.6 87 87 A Y T 3 S+ 0 0 37 -59,-2.6 2,-0.3 2,-0.1 -1,-0.3 0.360 88.9 111.6 -93.2 6.8 40.3 34.5 40.1 88 88 A A S < S- 0 0 16 -3,-2.2 2,-0.2 -60,-0.1 -57,-0.0 -0.627 77.3-113.5 -82.3 133.3 41.9 33.5 36.8 89 89 A V 0 0 124 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.1 -0.476 360.0 360.0 -61.7 132.3 44.3 35.9 35.2 90 90 A R 0 0 211 -2,-0.2 -1,-0.1 -6,-0.0 -3,-0.0 -0.187 360.0 360.0-111.5 360.0 42.6 37.0 31.9