==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 29-OCT-91 1YEB . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.E.P.MURPHY,G.D.BRAYER . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6578.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 148 0, 0.0 2,-0.3 0, 0.0 66,-0.1 0.000 360.0 360.0 360.0-147.0 1.3 8.1 -4.6 2 -4 A E + 0 0 164 65,-0.1 2,-0.4 2,-0.0 0, 0.0 -0.893 360.0 176.9-154.8 126.9 0.8 11.1 -6.9 3 -3 A F - 0 0 32 -2,-0.3 2,-0.3 94,-0.0 64,-0.1 -0.991 7.8-166.3-136.5 133.3 1.4 14.8 -5.8 4 -2 A K - 0 0 153 -2,-0.4 2,-0.3 90,-0.0 97,-0.1 -0.880 26.9-106.1-121.9 154.9 1.1 17.8 -8.1 5 -1 A A + 0 0 59 -2,-0.3 93,-0.2 1,-0.1 2,-0.1 -0.550 40.0 171.3 -83.5 137.9 2.3 21.4 -7.6 6 1 A G - 0 0 25 91,-0.8 2,-0.6 -2,-0.3 -1,-0.1 -0.076 49.1 -34.0-115.7-139.8 -0.4 23.9 -6.9 7 2 A S > - 0 0 27 1,-0.2 4,-2.9 -2,-0.1 95,-0.3 -0.778 32.6-164.6-104.0 126.5 0.2 27.5 -5.9 8 3 A A H > S+ 0 0 28 -2,-0.6 4,-2.0 2,-0.2 -1,-0.2 0.858 97.2 53.1 -64.9 -38.5 3.0 28.7 -3.7 9 4 A K H > S+ 0 0 179 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.930 114.5 42.4 -62.6 -48.2 1.2 32.1 -3.1 10 5 A K H > S+ 0 0 84 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.872 111.9 53.7 -61.9 -41.9 -1.9 30.1 -1.9 11 6 A G H X S+ 0 0 0 -4,-2.9 4,-2.2 87,-0.4 -1,-0.2 0.869 105.8 57.7 -59.5 -36.6 0.3 27.7 0.0 12 7 A A H X S+ 0 0 16 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.888 107.2 43.2 -58.9 -52.4 1.7 30.8 1.7 13 8 A T H X S+ 0 0 76 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.808 111.0 56.0 -67.3 -33.3 -1.6 32.1 3.0 14 9 A L H X S+ 0 0 27 -4,-1.8 4,-2.4 2,-0.2 5,-0.4 0.921 108.5 48.7 -64.6 -40.5 -2.6 28.6 4.2 15 10 A F H X>S+ 0 0 3 -4,-2.2 4,-3.1 2,-0.2 5,-2.2 0.960 111.2 48.3 -58.5 -54.9 0.6 28.4 6.2 16 11 A K H <5S+ 0 0 110 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.877 119.9 40.1 -57.6 -36.4 0.0 31.8 7.8 17 12 A T H <5S+ 0 0 92 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.641 131.3 21.5 -90.5 -17.7 -3.5 30.8 8.6 18 13 A R H <5S+ 0 0 151 -4,-2.4 -3,-0.2 -3,-0.2 -2,-0.2 0.709 131.2 21.3-120.9 -25.4 -3.0 27.2 9.6 19 14 A C T >X5S+ 0 0 24 -4,-3.1 3,-2.9 -5,-0.4 4,-1.9 0.792 100.0 74.8-114.5 -40.1 0.6 26.5 10.7 20 15 A Q T 34 S- 0 0 141 1,-0.2 3,-2.0 12,-0.1 12,-0.4 -0.301 84.9 -87.0 -69.4 153.5 12.6 30.4 8.1 27 22 A E T 3 S+ 0 0 142 1,-0.3 -1,-0.2 10,-0.1 -2,-0.1 -0.446 117.8 8.4 -63.2 120.3 16.3 29.6 8.4 28 23 A G T 3 S+ 0 0 71 -2,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.702 91.3 147.2 80.5 19.8 17.1 30.2 12.1 29 24 A G < - 0 0 20 -3,-2.0 -1,-0.3 1,-0.1 7,-0.2 -0.595 52.0 -97.0 -85.2 156.5 13.5 30.8 13.2 30 25 A P - 0 0 80 0, 0.0 -6,-0.3 0, 0.0 2,-0.2 -0.325 25.7-113.2 -73.9 153.5 12.6 29.7 16.8 31 26 A N + 0 0 57 -2,-0.1 2,-0.1 1,-0.1 -8,-0.1 -0.603 46.8 165.4 -75.4 148.7 11.0 26.5 17.9 32 27 A K - 0 0 97 2,-4.1 -9,-0.1 -10,-0.4 -10,-0.1 -0.076 66.7 -32.2-136.6-127.1 7.6 27.4 19.4 33 28 A V S S+ 0 0 104 -12,-0.3 -10,-0.2 -11,-0.1 -11,-0.1 0.940 142.4 32.5 -61.4 -41.2 4.6 25.1 20.2 34 29 A G S S- 0 0 5 -12,-3.4 -2,-4.1 1,-0.1 -10,-0.2 -0.622 103.3 -92.8-107.1 165.3 6.0 23.2 17.2 35 30 A P - 0 0 18 0, 0.0 -11,-0.2 0, 0.0 -1,-0.1 -0.338 47.9 -93.4 -71.0 157.2 9.5 22.7 16.0 36 31 A N - 0 0 18 -7,-0.2 -11,-0.2 -13,-0.1 -5,-0.1 -0.444 34.8-155.6 -68.3 145.1 11.1 25.1 13.3 37 32 A L > + 0 0 32 -13,-1.6 3,-2.0 -2,-0.1 4,-0.2 0.297 45.6 129.2-110.8 5.1 10.5 23.5 9.9 38 33 A H T 3 S+ 0 0 31 -12,-0.4 70,-0.2 1,-0.3 69,-0.1 -0.384 82.9 13.8 -59.1 141.1 13.3 25.0 7.8 39 34 A G T > S+ 0 0 29 68,-3.8 3,-1.4 -14,-0.2 -1,-0.3 0.525 84.1 139.1 68.4 15.4 15.1 22.2 6.1 40 35 A I G X + 0 0 15 -3,-2.0 3,-1.6 1,-0.3 24,-0.5 0.752 60.2 61.3 -59.0 -36.9 12.5 19.5 6.8 41 36 A F G 3 S+ 0 0 40 1,-0.3 -1,-0.3 -4,-0.2 25,-0.1 0.514 103.0 53.2 -72.7 -3.9 12.5 17.6 3.4 42 37 A G G < S+ 0 0 72 -3,-1.4 -1,-0.3 2,-0.1 2,-0.2 0.370 109.5 64.7-106.3 4.2 16.2 16.7 3.9 43 38 A R S < S- 0 0 52 -3,-1.6 21,-1.8 21,-0.2 2,-0.2 -0.718 73.6-122.7-122.6 172.2 15.4 15.2 7.4 44 39 A H B > -A 63 0A 70 -2,-0.2 3,-0.6 19,-0.2 19,-0.2 -0.670 52.1 -76.4-106.6 163.4 13.6 12.5 9.3 45 40 A S T 3 S+ 0 0 1 17,-2.0 -1,-0.2 -2,-0.2 16,-0.1 -0.185 108.1 21.4 -60.5 150.4 11.0 13.2 12.0 46 41 A G T 3 S+ 0 0 13 1,-0.1 -1,-0.2 -3,-0.1 7,-0.1 0.769 83.9 113.1 60.5 42.2 12.1 14.3 15.5 47 42 A Q < + 0 0 104 -3,-0.6 2,-0.5 2,-0.1 -2,-0.1 0.425 32.3 117.2-118.2 -0.2 15.6 15.7 14.8 48 43 A V > - 0 0 29 1,-0.1 3,-1.1 -12,-0.1 2,-0.1 -0.620 69.7-117.4 -77.8 127.8 15.4 19.4 15.5 49 44 A K T 3 S+ 0 0 192 -2,-0.5 3,-0.1 1,-0.2 -1,-0.1 -0.380 92.3 14.5 -64.2 127.1 17.7 20.1 18.4 50 45 A G T 3 S+ 0 0 78 1,-0.3 2,-0.4 -2,-0.1 -1,-0.2 0.109 95.4 120.2 88.8 -15.1 16.1 21.5 21.6 51 46 A Y < - 0 0 37 -3,-1.1 2,-1.1 -15,-0.1 -1,-0.3 -0.637 60.2-139.4 -81.9 133.9 12.6 20.5 20.5 52 47 A S - 0 0 87 -2,-0.4 2,-0.2 -3,-0.1 -3,-0.1 -0.758 28.1-176.1 -99.8 105.8 10.9 18.1 22.8 53 48 A Y - 0 0 39 -2,-1.1 2,-0.1 -7,-0.1 30,-0.0 -0.584 29.2-102.2 -91.2 163.0 9.1 15.6 20.6 54 49 A T > - 0 0 29 -2,-0.2 4,-2.1 1,-0.1 3,-0.3 -0.485 31.6-114.9 -79.2 158.2 6.8 12.8 21.6 55 50 A D H > S+ 0 0 128 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.898 115.9 65.2 -55.7 -42.5 8.2 9.3 21.6 56 51 A A H > S+ 0 0 25 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.876 103.5 39.3 -45.4 -57.5 5.7 8.8 18.8 57 52 A N H > S+ 0 0 16 -3,-0.3 4,-1.1 2,-0.2 5,-0.4 0.906 116.9 51.3 -69.0 -38.4 7.2 11.2 16.3 58 53 A I H >< S+ 0 0 82 -4,-2.1 3,-1.0 1,-0.2 -2,-0.2 0.975 113.2 43.5 -62.5 -52.1 10.7 10.2 17.1 59 54 A N H 3< S+ 0 0 132 -4,-3.4 -1,-0.2 1,-0.3 -2,-0.2 0.824 102.0 67.7 -61.5 -35.8 10.0 6.5 16.8 60 55 A K H 3< S- 0 0 92 -4,-2.2 -1,-0.3 -5,-0.3 -2,-0.2 0.857 82.2-163.1 -54.6 -33.3 8.0 6.9 13.6 61 56 A N << - 0 0 94 -4,-1.1 2,-0.3 -3,-1.0 -3,-0.1 0.916 12.0-171.3 50.5 48.4 11.2 8.0 11.8 62 57 A V - 0 0 8 -5,-0.4 -17,-2.0 6,-0.0 2,-0.9 -0.597 21.1-143.8 -75.4 129.5 9.4 9.6 8.9 63 58 A K B -A 44 0A 91 -2,-0.3 2,-0.4 -19,-0.2 -19,-0.2 -0.909 31.0-130.0 -93.0 109.3 11.6 10.7 6.0 64 59 A W + 0 0 11 -21,-1.8 2,-0.3 -2,-0.9 -21,-0.2 -0.505 44.2 147.7 -73.5 119.7 9.7 13.8 5.0 65 60 A D > - 0 0 60 -2,-0.4 4,-3.0 -23,-0.1 5,-0.2 -0.839 66.0 -89.3-139.7 169.3 8.9 14.2 1.3 66 61 A E H > S+ 0 0 64 -2,-0.3 4,-1.6 1,-0.2 34,-0.1 0.798 129.3 48.0 -53.7 -31.4 6.0 15.8 -0.6 67 62 A D H > S+ 0 0 32 2,-0.2 4,-1.4 1,-0.1 -1,-0.2 0.885 111.2 43.7 -82.1 -43.4 4.4 12.3 -0.3 68 63 A S H > S+ 0 0 9 -5,-0.2 4,-2.4 1,-0.2 5,-0.2 0.891 116.3 53.4 -63.7 -36.7 4.8 11.6 3.4 69 64 A M H X S+ 0 0 17 -4,-3.0 4,-2.5 1,-0.2 5,-0.2 0.910 104.3 51.7 -65.6 -46.3 3.8 15.2 3.9 70 65 A S H < S+ 0 0 17 -4,-1.6 4,-0.4 -5,-0.2 -1,-0.2 0.860 114.3 44.6 -59.8 -38.8 0.5 15.0 1.9 71 66 A E H X S+ 0 0 116 -4,-1.4 4,-1.1 2,-0.2 -2,-0.2 0.846 112.2 52.0 -72.9 -39.9 -0.5 11.9 3.9 72 67 A Y H < S+ 0 0 17 -4,-2.4 3,-0.4 1,-0.2 7,-0.2 0.930 109.5 47.8 -61.6 -51.1 0.5 13.4 7.3 73 68 A L T < S+ 0 0 16 -4,-2.5 17,-3.0 1,-0.2 -1,-0.2 0.687 97.1 72.3 -67.6 -13.9 -1.5 16.6 6.8 74 69 A T T 4 S- 0 0 43 -4,-0.4 -1,-0.2 1,-0.2 -2,-0.2 0.981 133.6 -22.7 -63.8 -44.2 -4.5 14.6 5.7 75 70 A N X - 0 0 61 -4,-1.1 4,-2.0 -3,-0.4 -1,-0.2 -0.637 64.6-160.0-169.0 100.1 -4.7 13.6 9.4 76 71 A P H > S+ 0 0 0 0, 0.0 4,-3.2 0, 0.0 7,-0.2 0.858 92.0 45.9 -52.5 -49.1 -1.6 13.9 11.6 77 72 A X H 4 S+ 0 0 136 10,-0.4 6,-0.2 2,-0.2 11,-0.1 0.887 107.9 55.9 -70.1 -32.1 -2.7 11.6 14.4 78 73 A K H 4 S+ 0 0 178 1,-0.2 -1,-0.2 2,-0.2 -6,-0.1 0.952 117.3 38.5 -62.3 -38.9 -4.0 8.9 12.0 79 74 A Y H < S+ 0 0 44 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.846 132.8 24.5 -75.2 -45.3 -0.4 8.9 10.5 80 75 A I S >< S- 0 0 2 -4,-3.2 3,-2.4 -5,-0.2 -1,-0.2 -0.690 80.3-159.6-127.1 77.9 1.4 9.3 13.8 81 76 A P T 3 S+ 0 0 91 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.301 82.1 29.8 -51.5 136.3 -0.7 8.0 16.6 82 77 A G T 3 S+ 0 0 57 1,-0.4 -26,-0.2 -26,-0.1 -25,-0.1 0.044 87.1 141.0 95.9 -22.3 0.5 9.6 19.9 83 78 A T < - 0 0 6 -3,-2.4 -1,-0.4 -6,-0.2 -3,-0.1 -0.286 49.1-146.3 -55.3 141.3 1.7 12.7 18.2 84 79 A K + 0 0 107 -3,-0.1 2,-0.7 2,-0.1 -1,-0.1 0.333 60.3 120.3 -92.8 6.7 1.0 15.9 20.1 85 80 A M - 0 0 45 1,-0.1 2,-1.2 -9,-0.1 -8,-0.1 -0.638 54.0-154.2 -73.7 118.0 0.4 18.0 17.0 86 81 A A + 0 0 86 -2,-0.7 2,-0.4 -10,-0.1 -1,-0.1 -0.612 48.7 118.3 -93.1 75.0 -3.2 19.3 17.6 87 82 A F - 0 0 48 -2,-1.2 -10,-0.4 1,-0.1 3,-0.1 -0.998 56.9-144.8-139.1 133.6 -4.4 19.9 14.0 88 83 A G - 0 0 54 -2,-0.4 2,-0.2 1,-0.2 -11,-0.1 0.862 52.3-114.2 -67.8 -38.5 -7.3 18.0 12.4 89 84 A G - 0 0 18 -14,-0.2 2,-0.6 -13,-0.1 -15,-0.2 -0.691 21.0 -78.9 129.6 174.9 -5.7 18.0 9.0 90 85 A L - 0 0 15 -17,-3.0 6,-0.1 -2,-0.2 -15,-0.0 -0.973 37.5-168.4-117.6 105.3 -6.3 19.5 5.4 91 86 A K + 0 0 119 -2,-0.6 2,-0.4 4,-0.1 -1,-0.1 0.785 61.7 77.8 -70.1 -31.3 -8.9 17.3 3.8 92 87 A K > - 0 0 143 1,-0.2 4,-1.7 2,-0.0 3,-0.1 -0.719 64.5-152.2 -92.8 132.4 -8.5 18.6 0.3 93 88 A E H > S+ 0 0 114 -2,-0.4 4,-3.7 1,-0.2 5,-0.3 0.905 102.0 58.6 -55.4 -48.7 -5.6 17.5 -1.9 94 89 A K H > S+ 0 0 94 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.904 108.3 47.0 -49.4 -46.9 -5.8 20.8 -3.7 95 90 A D H > S+ 0 0 49 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.819 113.5 46.0 -63.9 -38.9 -5.2 22.4 -0.3 96 91 A R H X S+ 0 0 33 -4,-1.7 4,-3.5 2,-0.2 5,-0.2 0.795 109.9 55.9 -75.6 -32.7 -2.3 20.1 0.5 97 92 A N H X S+ 0 0 9 -4,-3.7 4,-1.9 2,-0.2 -91,-0.8 0.904 109.6 44.4 -63.0 -45.9 -0.8 20.6 -2.9 98 93 A D H X S+ 0 0 2 -4,-1.7 4,-2.4 -5,-0.3 -87,-0.4 0.936 117.0 46.8 -61.4 -53.1 -0.7 24.4 -2.6 99 94 A L H X S+ 0 0 1 -4,-1.9 4,-2.5 1,-0.2 -2,-0.2 0.936 112.2 46.8 -61.1 -54.0 0.7 24.2 0.9 100 95 A I H X S+ 0 0 0 -4,-3.5 4,-2.5 1,-0.2 -1,-0.2 0.840 109.0 60.2 -59.0 -28.7 3.3 21.5 0.1 101 96 A T H X S+ 0 0 18 -4,-1.9 4,-1.7 -5,-0.2 -2,-0.2 0.980 109.7 39.3 -55.0 -57.7 4.2 23.8 -2.9 102 97 A Y H X S+ 0 0 50 -4,-2.4 4,-3.5 -95,-0.3 5,-0.3 0.909 114.9 53.2 -55.6 -48.0 5.0 26.7 -0.6 103 98 A L H X S+ 0 0 11 -4,-2.5 4,-2.9 1,-0.2 -1,-0.2 0.901 105.3 53.4 -57.3 -50.9 6.7 24.5 2.0 104 99 A K H < S+ 0 0 80 -4,-2.5 4,-0.4 1,-0.2 -1,-0.2 0.908 116.9 39.7 -52.8 -47.1 9.0 22.9 -0.5 105 100 A K H >< S+ 0 0 165 -4,-1.7 3,-0.5 -5,-0.2 -2,-0.2 0.900 121.5 41.2 -67.7 -47.7 10.1 26.4 -1.6 106 101 A A H 3< S+ 0 0 23 -4,-3.5 -2,-0.2 1,-0.2 -3,-0.2 0.646 108.8 58.5 -74.8 -26.4 10.2 28.0 1.9 107 102 A C T 3< 0 0 2 -4,-2.9 -68,-3.8 -5,-0.3 -1,-0.2 0.565 360.0 360.0 -82.2 -12.0 11.8 25.1 3.7 108 103 A E < 0 0 192 -3,-0.5 -1,-0.2 -4,-0.4 -2,-0.1 0.708 360.0 360.0 -83.7 360.0 14.9 25.0 1.6