==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 18-FEB-97 1YIC . COMPND 2 MOLECULE: CYTOCHROME C, ISO-1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR L.BANCI,I.BERTINI,K.L.BREN,H.B.GRAY,P.SOMPORNPISUT,P.TURANO . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6318.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 29.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -5 A T 0 0 166 0, 0.0 2,-0.3 0, 0.0 66,-0.0 0.000 360.0 360.0 360.0 173.6 11.3 15.0 6.1 2 -4 A E + 0 0 112 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.899 360.0 173.2-147.4 112.6 7.7 15.8 7.0 3 -3 A F + 0 0 29 -2,-0.3 -1,-0.1 94,-0.0 94,-0.1 0.959 23.2 177.2 -69.4 -70.8 4.8 13.4 6.6 4 -2 A K - 0 0 136 2,-0.0 97,-0.1 93,-0.0 -2,-0.1 0.528 33.8-114.9 60.6 143.2 2.1 15.5 8.3 5 -1 A A + 0 0 58 1,-0.1 2,-0.4 95,-0.1 96,-0.2 0.950 44.5 164.6 -66.1 -92.2 -1.5 14.2 8.3 6 1 A G - 0 0 66 95,-0.1 2,-0.4 92,-0.0 -1,-0.1 -0.924 53.4 -38.8 106.0-133.4 -3.7 16.5 6.2 7 2 A S - 0 0 44 -2,-0.4 4,-0.4 1,-0.2 3,-0.3 -0.891 40.1-157.8-143.8 103.6 -7.2 15.4 5.1 8 3 A A > + 0 0 10 -2,-0.4 3,-3.1 1,-0.2 94,-0.2 0.919 64.5 101.8 -41.3 -78.2 -8.1 11.9 3.9 9 4 A K T >> S+ 0 0 131 1,-0.3 3,-2.2 2,-0.2 4,-0.7 0.040 89.2 34.5 30.5 -95.9 -11.2 12.7 1.9 10 5 A K H 3> S+ 0 0 107 -3,-0.3 4,-3.2 1,-0.3 3,-0.3 0.873 107.4 72.6 -45.4 -46.5 -9.8 12.5 -1.7 11 6 A G H <> S+ 0 0 0 -3,-3.1 4,-3.2 -4,-0.4 -1,-0.3 0.802 92.5 57.8 -36.9 -40.8 -7.5 9.8 -0.4 12 7 A A H <> S+ 0 0 40 -3,-2.2 4,-2.8 2,-0.2 -1,-0.2 0.983 112.7 35.1 -57.9 -61.7 -10.6 7.6 -0.4 13 8 A T H X S+ 0 0 72 -4,-0.7 4,-2.3 -3,-0.3 5,-0.3 0.945 116.3 57.8 -60.4 -45.5 -11.4 8.0 -4.1 14 9 A L H >X S+ 0 0 14 -4,-3.2 4,-1.3 2,-0.2 3,-0.7 0.933 110.3 42.3 -45.5 -59.0 -7.7 8.0 -4.8 15 10 A F H >X>S+ 0 0 0 -4,-3.2 5,-2.3 1,-0.3 3,-1.0 0.940 114.7 51.5 -52.3 -51.4 -7.3 4.6 -3.2 16 11 A K H 3<5S+ 0 0 121 -4,-2.8 -1,-0.3 1,-0.3 -2,-0.2 0.740 120.5 34.4 -60.1 -26.5 -10.5 3.5 -5.0 17 12 A T H <<5S+ 0 0 75 -4,-2.3 -1,-0.3 -3,-0.7 -2,-0.2 0.392 134.2 24.8-107.5 -5.0 -9.1 4.7 -8.3 18 13 A R H <<5S+ 0 0 80 -4,-1.3 4,-0.2 -3,-1.0 -3,-0.2 0.654 131.7 16.9-121.9 -68.0 -5.4 3.8 -7.6 19 14 A C T >X5S+ 0 0 10 -4,-0.8 3,-2.7 -5,-0.3 4,-2.6 0.945 115.6 61.7 -85.9 -51.5 -4.8 1.1 -5.0 20 15 A L T 34 - 0 0 91 4,-0.1 3,-1.5 1,-0.1 12,-0.3 -0.747 65.0-123.9-111.5 150.0 -11.2 -4.6 3.8 27 22 A K T 3 S+ 0 0 169 1,-0.3 2,-0.4 -2,-0.3 -1,-0.1 0.957 110.7 26.2 -60.7 -65.2 -11.4 -7.3 6.5 28 23 A G T 3 S+ 0 0 82 0, 0.0 -1,-0.3 0, 0.0 -2,-0.0 -0.161 97.9 157.0 -84.8 38.0 -12.5 -10.4 4.5 29 24 A G < - 0 0 13 -3,-1.5 7,-0.3 -2,-0.4 -5,-0.1 -0.404 37.7-129.0 -74.3 143.5 -10.8 -8.7 1.5 30 25 A P - 0 0 67 0, 0.0 6,-0.5 0, 0.0 -4,-0.1 0.113 14.9-122.5 -73.8-166.1 -9.6 -10.8 -1.5 31 26 A H + 0 0 55 4,-0.2 -7,-0.0 1,-0.1 -2,-0.0 0.152 40.1 167.5-131.3 22.0 -6.1 -10.5 -3.0 32 27 A K S S- 0 0 93 1,-0.2 -9,-0.1 -9,-0.1 -1,-0.1 0.445 81.6 -31.8 -4.0 -93.9 -7.1 -9.6 -6.6 33 28 A V S S+ 0 0 83 -11,-1.2 -1,-0.2 1,-0.3 -10,-0.2 0.775 142.2 33.3 -93.9 -56.2 -3.7 -8.6 -8.0 34 29 A G S S- 0 0 6 -12,-2.1 -1,-0.3 -15,-0.2 3,-0.1 -0.696 94.2 -97.7-105.4 155.6 -2.3 -7.2 -4.7 35 30 A P - 0 0 10 0, 0.0 -11,-0.3 0, 0.0 -4,-0.2 -0.313 44.8 -93.4 -70.9 147.2 -2.9 -8.4 -1.1 36 31 A N - 0 0 20 -6,-0.5 -11,-0.2 -7,-0.3 12,-0.2 -0.383 27.6-154.6 -54.4 134.9 -5.5 -6.7 1.1 37 32 A L > + 0 0 21 -13,-2.7 3,-2.7 -3,-0.1 2,-0.7 -0.081 30.6 160.4-107.2 29.4 -3.8 -4.0 3.3 38 33 A H T 3 S- 0 0 48 -12,-0.3 -12,-0.1 1,-0.3 -13,-0.1 -0.392 85.5 -15.2 -58.9 101.2 -6.4 -4.3 6.1 39 34 A G T 3 S+ 0 0 6 -2,-0.7 4,-0.3 68,-0.5 -1,-0.3 0.805 87.1 156.0 68.9 32.4 -4.4 -2.7 9.0 40 35 A I X + 0 0 19 -3,-2.7 3,-2.5 2,-0.1 2,-0.6 0.912 49.9 92.0 -53.8 -43.2 -1.2 -3.1 7.0 41 36 A F T 3 S+ 0 0 13 -4,-0.3 24,-0.2 66,-0.3 3,-0.1 -0.373 88.2 34.6 -49.0 99.5 0.1 -0.2 9.2 42 37 A G T 3 S+ 0 0 58 22,-0.8 -1,-0.3 1,-0.7 -2,-0.1 -0.105 105.6 75.1 136.5 -36.6 1.7 -2.2 12.0 43 38 A R S < S- 0 0 105 -3,-2.5 21,-1.8 -4,-0.3 -1,-0.7 -0.251 78.6-106.9 -92.0-172.2 3.0 -5.3 10.2 44 39 A H B -A 63 0A 85 19,-0.2 2,-2.0 -3,-0.1 19,-0.2 -0.610 49.5 -68.2-112.1 172.4 6.1 -5.7 8.0 45 40 A S S S+ 0 0 3 17,-1.6 16,-0.7 -2,-0.2 15,-0.2 -0.439 118.2 25.2 -73.8 85.4 6.5 -6.2 4.2 46 41 A G S S+ 0 0 24 -2,-2.0 -1,-0.2 15,-0.1 -2,-0.0 0.625 77.8 118.1 133.3 76.2 5.0 -9.6 3.6 47 42 A Q + 0 0 107 -3,-0.2 5,-0.2 -4,-0.0 -2,-0.1 0.734 24.5 119.7-116.9 -71.3 2.5 -10.8 6.2 48 43 A A - 0 0 41 1,-0.2 -11,-0.0 -12,-0.2 0, 0.0 0.080 68.4-116.9 24.0-139.9 -1.1 -11.5 4.9 49 44 A E S S+ 0 0 185 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.185 98.0 18.0-152.4 9.3 -2.0 -15.1 5.5 50 45 A G S S+ 0 0 53 -19,-0.0 -2,-0.1 0, 0.0 -19,-0.0 0.487 101.9 76.1-147.8 -56.8 -2.5 -16.3 1.9 51 46 A Y - 0 0 63 1,-0.2 -3,-0.1 -15,-0.1 -20,-0.0 0.764 64.3-162.8 -43.9 -49.1 -0.9 -14.1 -0.7 52 47 A S - 0 0 88 -5,-0.2 -1,-0.2 2,-0.0 6,-0.1 0.153 24.9-150.7 73.8 -15.4 2.7 -15.3 -0.1 53 48 A Y - 0 0 40 4,-0.1 2,-0.3 5,-0.1 -7,-0.0 0.138 29.7 -51.3 61.8-172.3 4.1 -12.1 -1.9 54 49 A T > - 0 0 28 1,-0.1 4,-2.6 0, 0.0 5,-0.2 -0.782 45.0-117.5 -94.3 152.7 7.5 -11.9 -3.8 55 50 A D H > S+ 0 0 107 -2,-0.3 4,-3.1 1,-0.2 5,-0.3 0.901 117.6 55.5 -53.1 -41.4 10.8 -13.0 -2.3 56 51 A A H > S+ 0 0 24 26,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.968 109.4 41.3 -55.0 -62.9 11.8 -9.3 -2.7 57 52 A N H > S+ 0 0 10 2,-0.2 4,-0.9 1,-0.2 5,-0.5 0.935 120.4 46.0 -55.5 -48.9 8.9 -7.8 -0.7 58 53 A I H >< S+ 0 0 68 -4,-2.6 3,-2.0 1,-0.2 -2,-0.2 0.969 114.6 44.3 -51.8 -66.2 9.2 -10.6 2.0 59 54 A K H 3< S+ 0 0 124 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.761 103.2 68.6 -60.4 -25.7 13.0 -10.4 2.3 60 55 A K H 3< S- 0 0 79 -4,-2.4 -1,-0.3 -5,-0.3 -2,-0.2 0.855 77.5-170.8 -53.1 -40.9 12.7 -6.6 2.4 61 56 A N << + 0 0 112 -3,-2.0 2,-0.3 -4,-0.9 -3,-0.1 0.825 18.9 170.7 40.4 46.8 11.0 -6.8 5.8 62 57 A V - 0 0 20 -5,-0.5 -17,-1.6 -17,-0.2 -1,-0.2 -0.639 31.8-122.3 -85.4 135.8 10.1 -3.1 5.6 63 58 A L B -A 44 0A 59 -2,-0.3 2,-0.8 -19,-0.2 -19,-0.2 -0.520 16.7-128.2 -77.6 145.6 7.7 -1.7 8.2 64 59 A W + 0 0 7 -21,-1.8 -22,-0.8 -24,-0.3 2,-0.3 -0.859 47.4 145.0 -99.5 102.9 4.5 0.0 7.1 65 60 A D > - 0 0 64 -2,-0.8 4,-2.8 -24,-0.2 5,-0.5 -0.920 64.8-102.5-127.0 158.0 4.2 3.5 8.8 66 61 A E H > S+ 0 0 55 -2,-0.3 4,-0.6 1,-0.2 34,-0.1 0.787 124.3 44.6 -49.0 -31.7 2.8 6.8 7.5 67 62 A N H >> S+ 0 0 86 2,-0.2 4,-1.1 3,-0.1 3,-0.7 0.983 119.0 36.3 -75.9 -67.6 6.4 7.9 6.9 68 63 A N H 3> S+ 0 0 33 1,-0.3 4,-2.2 2,-0.2 -2,-0.2 0.904 114.3 56.4 -55.3 -50.6 7.9 4.7 5.3 69 64 A M H 3X S+ 0 0 4 -4,-2.8 4,-3.3 1,-0.2 -1,-0.3 0.863 101.0 63.2 -46.9 -41.9 4.8 3.8 3.3 70 65 A S H < S+ 0 0 20 -4,-2.2 3,-0.6 1,-0.2 7,-0.2 0.960 112.8 40.6 -49.4 -54.0 7.3 3.3 -0.9 73 68 A L H 3< S+ 0 0 10 -4,-3.3 17,-2.0 1,-0.2 -2,-0.2 0.851 105.2 65.8 -67.4 -33.6 4.1 4.7 -2.6 74 69 A T H 3< S- 0 0 23 -4,-2.9 17,-0.4 15,-0.3 -1,-0.2 0.904 136.3 -12.5 -51.7 -39.5 6.0 7.6 -4.1 75 70 A N S S+ 0 0 2 0, 0.0 4,-3.2 0, 0.0 7,-0.2 0.860 77.0 58.4 -74.3 -38.8 7.3 1.3 -5.0 77 72 A X H 4 S+ 0 0 156 10,-0.3 5,-0.3 1,-0.2 6,-0.2 0.822 112.6 42.3 -64.1 -31.5 9.0 -0.5 -7.8 78 73 A K H 4 S+ 0 0 164 -3,-0.4 -1,-0.2 -6,-0.2 -6,-0.1 0.918 114.5 49.9 -76.0 -47.2 12.3 1.4 -7.1 79 74 A Y H < S+ 0 0 88 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.1 0.913 124.8 29.9 -56.8 -45.9 11.9 1.0 -3.3 80 75 A I S >< S- 0 0 0 -4,-3.2 3,-2.4 -8,-0.1 2,-1.8 -0.785 79.5-158.7-115.4 85.3 11.3 -2.7 -3.7 81 76 A P T 3 S+ 0 0 99 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.445 88.8 29.3 -68.1 87.3 13.2 -3.9 -6.8 82 77 A G T 3 S+ 0 0 40 -2,-1.8 -26,-0.2 1,-0.4 -25,-0.2 0.195 84.0 125.2 141.5 -12.3 11.1 -7.0 -7.3 83 78 A T < - 0 0 19 -3,-2.4 -1,-0.4 -7,-0.2 -3,-0.0 -0.386 61.8-133.1 -57.4 152.4 7.7 -6.2 -5.9 84 79 A K + 0 0 130 -3,-0.1 2,-2.1 -51,-0.1 -1,-0.1 0.090 59.6 138.5 -99.0 28.1 4.8 -6.7 -8.4 85 80 A M - 0 0 20 -5,-0.2 2,-1.7 1,-0.1 -8,-0.2 -0.486 31.0-176.9 -54.8 83.4 3.5 -3.4 -7.4 86 81 A A + 0 0 83 -2,-2.1 2,-0.3 -10,-0.1 -1,-0.1 -0.172 36.5 145.0 -79.1 46.2 2.7 -2.6 -11.1 87 82 A F - 0 0 35 -2,-1.7 -10,-0.3 1,-0.1 -2,-0.1 -0.664 64.7-135.3-104.5 144.8 1.6 0.8 -9.7 88 83 A G - 0 0 60 -2,-0.3 3,-0.2 1,-0.1 -1,-0.1 0.882 49.8-150.1 -49.0 -50.1 1.7 4.5 -10.8 89 84 A G - 0 0 3 1,-0.1 -15,-0.3 -14,-0.1 -14,-0.1 -0.351 20.3 -87.2 97.1 171.3 2.9 5.5 -7.3 90 85 A L + 0 0 0 -17,-2.0 2,-2.5 -20,-0.2 -16,-0.2 -0.349 50.9 160.3-129.7 52.3 2.2 8.8 -5.5 91 86 A K + 0 0 167 -17,-0.4 2,-0.1 -3,-0.2 -17,-0.1 -0.391 51.7 89.9 -71.7 61.7 4.9 11.2 -6.6 92 87 A K S S- 0 0 88 -2,-2.5 -2,-0.1 1,-0.0 -18,-0.0 -0.010 75.7-131.6-116.5-122.5 2.9 14.3 -5.6 93 88 A E S > S+ 0 0 159 -2,-0.1 4,-0.5 0, 0.0 -1,-0.0 0.167 96.9 29.7-172.7 -49.6 2.9 15.9 -2.1 94 89 A K H > S+ 0 0 142 2,-0.2 4,-2.9 3,-0.1 5,-0.3 0.914 116.4 52.9 -93.1 -58.8 -0.7 16.3 -1.1 95 90 A D H > S+ 0 0 44 1,-0.3 4,-2.5 2,-0.2 5,-0.1 0.861 111.0 51.4 -44.3 -49.0 -2.5 13.3 -2.9 96 91 A R H > S+ 0 0 39 -6,-0.2 4,-2.8 2,-0.2 -1,-0.3 0.956 112.4 43.7 -52.0 -56.9 0.1 11.0 -1.3 97 92 A N H X S+ 0 0 21 -4,-0.5 4,-3.1 1,-0.2 5,-0.3 0.938 110.1 55.9 -60.7 -49.4 -0.6 12.3 2.2 98 93 A D H X S+ 0 0 7 -4,-2.9 4,-2.6 1,-0.2 -1,-0.2 0.904 112.3 45.3 -45.4 -47.7 -4.4 12.3 1.6 99 94 A L H X S+ 0 0 0 -4,-2.5 4,-3.0 -5,-0.3 -2,-0.2 0.962 111.1 49.3 -64.3 -55.1 -3.9 8.6 0.8 100 95 A I H X S+ 0 0 0 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.937 116.8 43.8 -50.4 -46.6 -1.7 7.7 3.7 101 96 A T H X S+ 0 0 13 -4,-3.1 4,-2.3 -96,-0.2 -1,-0.2 0.921 110.6 55.3 -66.3 -45.1 -4.2 9.4 6.1 102 97 A Y H X S+ 0 0 16 -4,-2.6 4,-3.2 -5,-0.3 -1,-0.2 0.924 107.5 49.5 -48.3 -52.8 -7.1 7.8 4.3 103 98 A L H X S+ 0 0 4 -4,-3.0 4,-2.9 1,-0.2 -2,-0.2 0.949 109.6 51.6 -55.5 -49.1 -5.6 4.4 4.9 104 99 A K H X S+ 0 0 34 -4,-2.2 4,-0.6 -5,-0.2 -1,-0.2 0.849 114.3 44.0 -55.3 -37.3 -5.2 5.3 8.5 105 100 A K H < S+ 0 0 162 -4,-2.3 3,-0.4 2,-0.2 -2,-0.2 0.931 111.5 52.0 -69.6 -49.4 -8.8 6.3 8.6 106 101 A A H < S- 0 0 52 -4,-3.2 -2,-0.2 1,-0.3 -3,-0.2 0.889 143.0 -17.6 -58.5 -45.1 -10.1 3.3 6.7 107 102 A S H < 0 0 18 -4,-2.9 -68,-0.5 -5,-0.2 -66,-0.3 -0.552 360.0 360.0-165.0 97.2 -8.2 1.0 9.1 108 103 A E < 0 0 150 -4,-0.6 -4,-0.1 -3,-0.4 -3,-0.1 -0.138 360.0 360.0 -43.7 360.0 -5.5 2.5 11.3