==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 18-JAN-05 1YKH . COMPND 2 MOLECULE: RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN MED7; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.BAUMLI,S.HOEPPNER,P.CRAMER . 209 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 13843.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 185 88.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 21 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 162 77.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 111 A N > 0 0 132 0, 0.0 4,-1.4 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 86.7 -9.6 23.9 44.9 2 112 A Y H > + 0 0 41 1,-0.2 4,-0.5 2,-0.2 164,-0.1 0.551 360.0 59.9 -66.6 -9.9 -5.9 23.5 45.1 3 113 A Q H > S+ 0 0 75 2,-0.2 4,-1.3 1,-0.1 3,-0.5 0.887 103.3 47.9 -85.8 -40.9 -6.0 21.2 48.1 4 114 A Y H > S+ 0 0 130 -3,-0.4 4,-2.4 1,-0.2 5,-0.3 0.866 109.2 57.8 -62.5 -35.5 -8.0 18.5 46.4 5 115 A K H X S+ 0 0 37 -4,-1.4 4,-1.0 1,-0.2 -1,-0.2 0.795 104.8 48.9 -65.6 -30.0 -5.5 18.9 43.5 6 116 A I H X S+ 0 0 4 -4,-0.5 4,-1.0 -3,-0.5 -1,-0.2 0.753 109.7 54.4 -81.3 -23.6 -2.7 18.1 45.9 7 117 A Q H >X S+ 0 0 95 -4,-1.3 4,-1.4 2,-0.2 3,-1.0 0.978 110.6 41.7 -71.3 -59.2 -4.6 15.1 47.2 8 118 A E H 3X S+ 0 0 45 -4,-2.4 4,-2.5 1,-0.3 5,-0.2 0.820 109.6 61.2 -57.9 -31.8 -5.1 13.4 43.8 9 119 A L H 3X S+ 0 0 3 -4,-1.0 4,-1.4 -5,-0.3 -1,-0.3 0.881 106.8 45.6 -64.0 -34.5 -1.6 14.3 43.0 10 120 A R H X S+ 0 0 146 -4,-0.9 4,-2.0 -3,-0.2 3,-0.5 0.999 113.6 41.3 -62.1 -68.5 1.1 6.0 44.7 15 125 A S H 3X S+ 0 0 44 -4,-2.3 4,-2.1 1,-0.2 -1,-0.2 0.699 111.3 60.1 -55.0 -20.2 -0.7 4.0 41.9 16 126 A L H 3X S+ 0 0 0 -4,-2.2 4,-2.2 -5,-0.3 -1,-0.2 0.964 107.0 43.5 -72.5 -49.3 2.1 5.0 39.5 17 127 A L H < S+ 0 0 35 -4,-2.0 3,-3.5 4,-0.2 -2,-0.2 0.991 113.9 47.0 -68.9 -64.4 4.2 -4.8 38.8 23 133 A L H 3< S+ 0 0 1 -4,-2.6 -2,-0.2 1,-0.3 -3,-0.2 0.871 111.2 52.8 -41.9 -48.7 5.4 -4.1 35.2 24 134 A I T 3< S- 0 0 11 -4,-3.8 -1,-0.3 -5,-0.2 -2,-0.2 0.427 119.5-110.7 -73.0 2.9 9.0 -4.3 36.4 25 135 A G S < S+ 0 0 39 -3,-3.5 -3,-0.1 -5,-0.3 -2,-0.1 -0.078 88.4 112.6 97.5 -36.7 8.4 -7.7 38.0 26 136 A V S S+ 0 0 103 -5,-0.2 2,-0.3 -6,-0.1 -4,-0.2 0.819 84.9 33.5 -39.2 -45.9 8.7 -6.9 41.7 27 137 A L S S- 0 0 75 -6,-1.7 -2,-0.2 -9,-0.2 2,-0.2 -0.746 101.8 -91.7-110.4 162.9 5.0 -7.5 42.2 28 138 A S + 0 0 112 -2,-0.3 2,-0.2 2,-0.0 -5,-0.1 -0.479 48.1 153.4 -79.6 145.0 2.8 -10.1 40.4 29 139 A I - 0 0 54 -2,-0.2 5,-0.1 -7,-0.1 -2,-0.0 -0.787 42.7-117.8-166.8 118.1 0.9 -9.4 37.3 30 140 A N > - 0 0 85 -2,-0.2 3,-2.5 1,-0.1 4,-0.3 -0.434 34.2-107.3 -67.5 136.9 -0.0 -12.1 34.7 31 141 A P G > S+ 0 0 115 0, 0.0 3,-1.4 0, 0.0 4,-0.3 0.620 112.1 63.6 -27.5 -50.2 1.5 -11.5 31.1 32 142 A D G 3 S+ 0 0 99 1,-0.3 4,-0.4 2,-0.1 3,-0.4 0.633 100.8 57.6 -61.4 -12.0 -1.7 -10.5 29.2 33 143 A M G <> S+ 0 0 43 -3,-2.5 4,-2.3 1,-0.2 -1,-0.3 0.707 72.4 97.7 -89.1 -24.3 -1.8 -7.4 31.5 34 144 A Y H <> S+ 0 0 28 -3,-1.4 4,-1.5 -4,-0.3 -1,-0.2 0.716 88.7 48.9 -36.5 -27.4 1.7 -6.2 30.6 35 145 A E H > S+ 0 0 80 -3,-0.4 4,-2.7 -4,-0.3 5,-0.3 0.953 104.6 51.9 -81.7 -55.2 -0.2 -3.9 28.2 36 146 A R H > S+ 0 0 128 -4,-0.4 4,-2.5 -3,-0.3 -2,-0.2 0.895 111.5 54.1 -46.6 -43.2 -2.8 -2.4 30.6 37 147 A K H >X S+ 0 0 19 -4,-2.3 4,-2.6 2,-0.2 3,-0.6 0.986 107.5 44.9 -54.5 -69.7 0.1 -1.6 32.8 38 148 A V H 3< S+ 0 0 14 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.831 113.4 52.4 -45.9 -40.1 2.2 0.3 30.3 39 149 A E H >X S+ 0 0 92 -4,-2.7 4,-1.8 1,-0.2 3,-1.4 0.937 110.8 47.2 -64.9 -43.1 -0.9 2.2 29.2 40 150 A N H S+ 0 0 110 -3,-1.4 4,-2.0 -5,-0.3 -1,-0.2 0.656 111.5 49.9-116.9 -36.0 1.3 6.8 30.8 43 153 A T H X S+ 0 0 81 -4,-1.8 4,-2.7 2,-0.2 -2,-0.2 0.933 112.9 49.3 -68.7 -44.6 -2.2 8.0 31.6 44 154 A I H X S+ 0 0 15 -4,-2.9 4,-2.5 1,-0.2 -1,-0.2 0.946 110.1 50.3 -60.1 -49.4 -1.1 8.5 35.2 45 155 A L H > S+ 0 0 13 -5,-0.4 4,-2.4 1,-0.2 -1,-0.2 0.910 111.7 47.7 -56.9 -43.5 2.0 10.5 34.2 46 156 A V H X S+ 0 0 77 -4,-2.0 4,-2.7 1,-0.2 5,-0.2 0.937 111.0 51.8 -63.4 -43.9 -0.1 12.7 31.9 47 157 A N H X S+ 0 0 76 -4,-2.7 4,-2.7 2,-0.2 -2,-0.2 0.876 108.8 51.3 -58.5 -39.3 -2.6 13.2 34.7 48 158 A I H X S+ 0 0 3 -4,-2.5 4,-3.6 2,-0.2 5,-0.2 0.970 110.8 46.8 -63.4 -53.6 0.2 14.2 37.1 49 159 A H H X S+ 0 0 36 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.945 114.2 47.5 -52.9 -52.9 1.6 16.8 34.8 50 160 A H H X S+ 0 0 111 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.950 114.7 47.1 -53.2 -51.3 -1.8 18.3 34.1 51 161 A L H X S+ 0 0 28 -4,-2.7 4,-0.6 -5,-0.2 -2,-0.2 0.918 110.7 51.5 -58.4 -45.2 -2.5 18.3 37.8 52 162 A L H >< S+ 0 0 3 -4,-3.6 3,-1.2 1,-0.2 4,-0.4 0.930 109.3 50.8 -59.5 -45.8 0.8 19.9 38.6 53 163 A N H >< S+ 0 0 55 -4,-2.8 3,-2.7 1,-0.3 -2,-0.2 0.944 102.8 57.8 -56.3 -52.7 0.3 22.7 36.0 54 164 A E H 3< S+ 0 0 95 -4,-2.3 4,-0.3 1,-0.3 -1,-0.3 0.691 101.1 62.1 -52.9 -16.7 -3.1 23.6 37.4 55 165 A Y T S+ 0 0 122 -3,-2.7 4,-1.6 -4,-0.4 5,-0.2 0.879 80.0 57.6 -51.5 -48.9 0.9 27.0 39.4 57 167 A P H >> S+ 0 0 54 0, 0.0 4,-2.2 0, 0.0 3,-0.6 0.919 107.1 50.7 -49.7 -47.0 -1.4 29.9 40.2 58 168 A H H 3> S+ 0 0 0 -3,-0.4 4,-1.8 -4,-0.3 -2,-0.2 0.930 110.9 46.8 -57.5 -48.7 -1.4 28.7 43.8 59 169 A Q H 3X S+ 0 0 3 -4,-1.7 4,-0.9 1,-0.2 -1,-0.3 0.662 109.3 56.5 -69.9 -16.3 2.3 28.6 44.0 60 170 A S H X S+ 0 0 75 -4,-2.1 4,-2.4 -3,-0.2 3,-0.7 0.963 108.8 53.1 -70.2 -54.4 3.9 37.1 45.9 65 175 A I H 3X S+ 0 0 2 -4,-3.0 4,-2.3 1,-0.3 -2,-0.2 0.812 108.1 53.2 -52.0 -31.2 3.3 36.5 49.6 66 176 A M H 3X S+ 0 0 110 -4,-1.8 4,-2.2 -5,-0.2 -1,-0.3 0.885 109.1 48.2 -73.7 -35.8 6.9 35.8 49.9 67 177 A L H X S+ 0 0 10 -4,-2.3 4,-2.2 2,-0.2 3,-0.6 0.972 112.6 45.4 -60.6 -50.9 13.0 51.2 61.4 80 190 A R H 3X S+ 0 0 110 -4,-2.3 4,-2.4 1,-0.3 -2,-0.2 0.943 108.2 57.6 -54.7 -50.2 14.9 49.1 63.9 81 191 A E H 3X S+ 0 0 126 -4,-3.4 4,-1.6 1,-0.2 -1,-0.3 0.830 109.0 46.1 -50.6 -36.6 18.2 50.2 62.4 82 192 A I H 0 0 49 0, 0.0 4,-0.8 0, 0.0 -34,-0.1 0.000 360.0 360.0 360.0 144.6 8.4 29.6 43.5 98 3 B D H >> + 0 0 121 2,-0.2 4,-3.0 1,-0.2 3,-0.8 0.933 360.0 54.5 -76.9 -45.3 11.6 27.6 43.3 99 4 B R H 3> S+ 0 0 120 1,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.895 107.4 52.0 -54.0 -40.2 10.3 24.6 45.1 100 5 B M H 3> S+ 0 0 11 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.825 111.7 47.6 -65.1 -30.0 7.4 24.5 42.6 101 6 B T H - 0 0 69 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.022 30.8-112.0 -54.7 164.4 22.2 -11.1 28.1 133 52 B P H > S+ 0 0 107 0, 0.0 4,-1.5 0, 0.0 5,-0.2 0.964 115.7 47.1 -65.2 -56.8 19.9 -12.1 31.0 134 53 B E H > S+ 0 0 132 1,-0.2 4,-0.8 2,-0.2 -3,-0.0 0.652 116.3 51.3 -62.9 -11.7 22.1 -11.3 34.0 135 54 B E H >> S+ 0 0 90 2,-0.2 4,-1.4 -3,-0.1 3,-0.7 0.928 103.8 50.8 -86.7 -58.1 22.6 -7.9 32.2 136 55 B F H 3X S+ 0 0 10 -4,-2.6 4,-1.4 1,-0.3 -2,-0.2 0.756 110.8 55.9 -50.9 -25.1 19.0 -6.9 31.4 137 56 B S H 3X S+ 0 0 37 -4,-1.5 4,-1.5 -5,-0.2 -1,-0.3 0.896 102.7 52.4 -77.1 -42.3 18.5 -7.6 35.1 138 57 B N H XX S+ 0 0 78 -4,-0.8 4,-2.2 -3,-0.7 3,-1.1 0.989 114.2 40.0 -55.3 -67.6 21.2 -5.2 36.4 139 58 B T H 3X S+ 0 0 39 -4,-1.4 4,-2.9 1,-0.3 5,-0.4 0.916 109.6 59.8 -48.8 -53.5 20.1 -2.1 34.5 140 59 B I H 3X S+ 0 0 8 -4,-1.4 4,-1.4 -5,-0.3 -1,-0.3 0.831 110.7 43.7 -46.6 -35.5 16.4 -2.9 35.1 141 60 B D H < S+ 0 0 0 -4,-2.8 3,-0.9 1,-0.2 -1,-0.2 0.911 110.1 50.2 -52.0 -41.0 5.2 18.3 47.3 159 78 B D H 3< S+ 0 0 88 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.924 111.3 48.5 -63.9 -41.2 5.2 18.3 51.1 160 79 B S H 3< S+ 0 0 37 -4,-2.6 -1,-0.2 -3,-0.1 -2,-0.2 0.451 78.2 123.2 -79.1 -2.3 7.5 21.3 51.2 161 80 B L S X< S- 0 0 4 -4,-1.0 3,-1.4 -3,-0.9 4,-0.2 -0.430 72.0-111.6 -60.4 131.8 5.5 23.4 48.7 162 81 B P T 3 S+ 0 0 38 0, 0.0 -100,-0.1 0, 0.0 -1,-0.1 -0.389 97.2 9.0 -67.2 140.9 4.6 26.6 50.6 163 82 B G T > S+ 0 0 21 1,-0.1 3,-1.9 -2,-0.1 8,-0.1 0.741 83.2 146.7 62.0 23.0 1.0 27.1 51.5 164 83 B V T < S+ 0 0 11 -3,-1.4 -158,-0.1 1,-0.3 -1,-0.1 0.839 73.4 42.8 -59.1 -35.9 0.4 23.5 50.4 165 84 B D T 3 S+ 0 0 117 -4,-0.2 2,-0.4 -159,-0.0 -1,-0.3 0.164 101.6 96.0 -96.4 18.4 -2.3 23.0 53.0 166 85 B V < - 0 0 40 -3,-1.9 -164,-0.0 -4,-0.1 3,-0.0 -0.865 65.0-137.3-113.7 144.4 -3.8 26.4 52.2 167 86 B S > - 0 0 23 -2,-0.4 4,-1.1 1,-0.1 -1,-0.1 -0.024 26.4-108.3 -83.0-169.9 -6.7 27.3 50.0 168 87 B A H > S+ 0 0 30 2,-0.2 4,-2.7 3,-0.1 5,-0.3 0.905 114.1 60.7 -86.0 -49.0 -7.1 30.2 47.5 169 88 B E H > S+ 0 0 140 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.876 109.9 44.5 -43.7 -45.7 -9.6 32.2 49.6 170 89 B E H >> S+ 0 0 89 2,-0.2 4,-3.0 1,-0.2 3,-0.5 0.947 107.3 56.2 -66.9 -50.7 -7.0 32.4 52.3 171 90 B Q H 3X S+ 0 0 2 -4,-1.1 4,-1.7 1,-0.3 -2,-0.2 0.919 107.8 50.7 -48.2 -46.0 -4.1 33.2 50.0 172 91 B L H 3X S+ 0 0 100 -4,-2.7 4,-1.7 1,-0.2 -1,-0.3 0.870 110.4 49.5 -62.1 -35.3 -6.1 36.2 48.8 173 92 B R H X S+ 0 0 120 -4,-2.0 4,-2.5 1,-0.2 3,-0.7 0.968 109.4 51.0 -66.0 -55.7 1.4 51.0 57.8 185 104 B V H 3X S+ 0 0 4 -4,-2.9 4,-1.7 1,-0.3 -1,-0.2 0.761 111.4 51.4 -56.8 -22.3 5.1 49.9 58.1 186 105 B E H 3X S+ 0 0 97 -4,-1.7 4,-2.1 2,-0.2 -1,-0.3 0.831 106.0 52.5 -84.3 -29.0 5.9 52.5 55.5 187 106 B D H S+ 0 0 93 -4,-1.9 5,-0.9 1,-0.2 -2,-0.2 0.875 116.0 49.6 -54.0 -40.9 25.2 73.3 67.0 207 126 B I H ><5S+ 0 0 101 -4,-2.6 3,-2.2 1,-0.2 -1,-0.2 0.919 109.3 47.3 -68.4 -46.0 28.3 72.2 65.0 208 127 B E H 3<5S+ 0 0 145 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.805 104.4 64.5 -64.4 -24.6 28.2 74.9 62.3 209 128 B D T 3<5S- 0 0 110 -4,-1.7 -1,-0.3 -5,-0.3 -2,-0.2 0.486 121.5-117.1 -73.1 -3.0 27.7 77.2 65.3 210 129 B F T < 5 0 0 189 -3,-2.2 -3,-0.2 1,-0.2 -2,-0.2 0.971 360.0 360.0 61.8 57.1 31.2 76.0 66.2 211 130 B V < 0 0 132 -5,-0.9 -1,-0.2 -4,-0.1 -2,-0.0 -0.743 360.0 360.0-149.6 360.0 30.2 74.3 69.4