==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 01-FEB-05 1YQB . COMPND 2 MOLECULE: UBIQUILIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.R.WALKER,S.XUE,G.V.AVVAKUMOV,E.M.NEWMAN,F.MACKENZIE, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6565.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 11 A S > 0 0 155 0, 0.0 3,-1.3 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 132.5 3.2 6.4 13.0 2 12 A G T 3 - 0 0 84 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.375 360.0 -31.8 59.7-143.6 0.2 4.2 13.7 3 13 A L T 3 S+ 0 0 182 -2,-0.1 -1,-0.2 2,-0.1 0, 0.0 0.458 116.5 93.9 -79.9 -6.6 -2.3 5.8 16.0 4 14 A V < - 0 0 105 -3,-1.3 0, 0.0 1,-0.0 0, 0.0 -0.810 67.9-135.3-104.2 125.8 0.3 7.8 18.1 5 15 A P - 0 0 100 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.220 19.1-120.9 -69.2 161.9 1.2 11.4 17.3 6 16 A R S S+ 0 0 256 2,-0.0 2,-0.2 0, 0.0 -2,-0.0 0.852 91.8 19.0 -72.1 -34.4 4.9 12.7 17.3 7 17 A G - 0 0 33 3,-0.0 3,-0.0 2,-0.0 0, 0.0 -0.549 69.8-130.6-125.4-168.4 4.1 15.3 20.0 8 18 A S > - 0 0 60 3,-0.3 3,-0.7 -2,-0.2 -2,-0.0 -0.997 17.7-137.0-149.9 143.9 1.7 16.2 22.9 9 19 A P T 3 S+ 0 0 104 0, 0.0 20,-0.1 0, 0.0 -1,-0.1 0.689 108.5 58.2 -58.2 -32.3 -0.3 19.2 24.3 10 20 A H T 3 S+ 0 0 107 1,-0.1 19,-1.6 18,-0.1 2,-0.8 0.606 92.2 79.4 -78.4 -10.1 0.8 18.2 27.8 11 21 A L E < +A 28 0A 105 -3,-0.7 -3,-0.3 17,-0.2 2,-0.2 -0.862 58.6 163.1-112.4 103.7 4.5 18.5 26.9 12 22 A I E -A 27 0A 17 15,-2.7 15,-2.5 -2,-0.8 2,-0.4 -0.641 30.8-134.5-108.1 165.7 5.8 22.1 26.9 13 23 A K E -A 26 0A 87 13,-0.2 61,-3.6 -2,-0.2 2,-0.4 -0.998 22.4-176.4-122.9 125.7 9.3 23.6 27.0 14 24 A V E -A 25 0A 0 11,-2.5 11,-2.5 -2,-0.4 2,-0.5 -0.947 23.0-128.6-121.0 142.1 10.1 26.6 29.3 15 25 A T E -Ab 24 76A 21 60,-3.0 62,-3.5 -2,-0.4 2,-0.6 -0.814 14.9-158.2 -92.4 125.1 13.4 28.5 29.6 16 26 A V E -Ab 23 77A 0 7,-3.2 7,-2.9 -2,-0.5 2,-0.5 -0.934 15.7-170.2-101.0 116.6 14.7 28.8 33.1 17 27 A K E +Ab 22 78A 89 60,-2.7 62,-2.6 -2,-0.6 5,-0.2 -0.921 9.2 179.4-115.0 123.7 17.1 31.8 33.2 18 28 A T - 0 0 11 3,-2.5 62,-0.1 -2,-0.5 59,-0.0 -0.634 52.1 -92.0-103.9 175.7 19.4 32.7 36.1 19 29 A P S S+ 0 0 99 0, 0.0 61,-0.1 0, 0.0 3,-0.1 0.762 127.9 23.6 -56.7 -17.6 21.8 35.6 36.2 20 30 A K S S+ 0 0 186 1,-0.1 2,-0.3 0, 0.0 -3,-0.0 0.578 120.9 47.0-120.4 -18.7 24.4 33.1 34.8 21 31 A D - 0 0 75 2,-0.0 -3,-2.5 0, 0.0 2,-0.4 -0.867 48.3-160.1-132.2 160.3 22.6 30.4 33.0 22 32 A K E +A 17 0A 127 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.945 26.1 171.4-140.5 113.5 19.9 29.7 30.5 23 33 A E E -A 16 0A 64 -7,-2.9 -7,-3.2 -2,-0.4 2,-0.3 -0.988 24.9-136.0-134.7 132.4 18.4 26.2 30.6 24 34 A D E -A 15 0A 57 -2,-0.4 2,-0.4 -9,-0.2 -9,-0.2 -0.643 16.4-163.5 -87.7 143.8 15.5 24.6 29.0 25 35 A F E -A 14 0A 5 -11,-2.5 -11,-2.5 -2,-0.3 2,-0.5 -0.987 13.6-146.6-127.4 121.1 13.1 22.3 30.8 26 36 A S E +A 13 0A 64 -2,-0.4 2,-0.3 -13,-0.2 -13,-0.2 -0.740 38.1 165.4 -79.2 128.4 10.6 20.0 29.2 27 37 A V E -A 12 0A 7 -15,-2.5 -15,-2.7 -2,-0.5 2,-0.3 -0.952 42.7-105.4-143.0 158.5 7.7 20.0 31.5 28 38 A T E > -A 11 0A 71 -2,-0.3 3,-1.6 -17,-0.2 38,-0.2 -0.628 33.9-124.0 -80.2 147.3 4.2 19.0 31.6 29 39 A D T 3 S+ 0 0 47 -19,-1.6 38,-1.5 -2,-0.3 37,-0.1 0.826 112.6 49.4 -64.4 -28.1 1.8 22.0 31.4 30 40 A T T 3 S+ 0 0 82 -20,-0.2 -1,-0.3 36,-0.2 -20,-0.0 0.248 80.8 130.3 -90.9 5.3 0.1 20.9 34.7 31 41 A C < - 0 0 8 -3,-1.6 35,-2.7 34,-0.1 36,-0.2 -0.376 57.1-127.9 -59.2 137.6 3.5 20.5 36.5 32 42 A T B > -E 65 0B 33 33,-0.3 4,-2.7 1,-0.1 33,-0.3 -0.510 16.5-111.3 -86.0 164.7 3.4 22.4 39.9 33 43 A I H > S+ 0 0 0 31,-2.7 4,-3.0 29,-0.5 29,-0.2 0.919 120.3 52.9 -58.2 -42.8 5.9 25.0 41.0 34 44 A Q H > S+ 0 0 123 28,-2.4 4,-1.8 30,-0.2 -1,-0.2 0.915 110.8 47.0 -63.2 -39.4 7.1 22.5 43.7 35 45 A Q H > S+ 0 0 106 27,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.875 110.9 50.7 -69.4 -41.6 7.6 19.8 41.1 36 46 A L H X S+ 0 0 0 -4,-2.7 4,-2.9 2,-0.2 -2,-0.2 0.914 107.9 54.2 -60.5 -38.8 9.4 22.2 38.8 37 47 A K H X S+ 0 0 31 -4,-3.0 4,-2.5 1,-0.2 -2,-0.2 0.900 108.2 50.6 -58.6 -39.1 11.7 23.1 41.8 38 48 A E H X S+ 0 0 87 -4,-1.8 4,-1.8 2,-0.2 -1,-0.2 0.913 110.3 47.6 -66.0 -43.8 12.4 19.5 42.2 39 49 A E H X S+ 0 0 100 -4,-2.1 4,-1.7 1,-0.2 -2,-0.2 0.919 113.0 49.4 -62.3 -44.5 13.3 19.1 38.5 40 50 A I H X S+ 0 0 0 -4,-2.9 4,-2.9 2,-0.2 5,-0.4 0.889 108.1 53.7 -61.6 -41.3 15.5 22.2 38.7 41 51 A S H X>S+ 0 0 3 -4,-2.5 4,-1.6 1,-0.2 5,-1.3 0.897 110.0 48.1 -57.8 -39.9 17.3 20.8 41.9 42 52 A Q H <5S+ 0 0 102 -4,-1.8 -1,-0.2 3,-0.2 -2,-0.2 0.842 115.1 45.4 -72.6 -30.8 18.1 17.7 40.0 43 53 A R H <5S+ 0 0 111 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.934 125.0 29.0 -76.5 -48.5 19.4 19.6 37.0 44 54 A F H <5S- 0 0 50 -4,-2.9 -2,-0.2 -5,-0.1 -3,-0.2 0.636 105.9-119.8 -85.5 -15.1 21.5 22.2 38.8 45 55 A K T <5 + 0 0 168 -4,-1.6 2,-0.3 -5,-0.4 -3,-0.2 0.978 67.9 132.9 62.5 63.5 22.3 19.9 41.9 46 56 A A < - 0 0 19 -5,-1.3 -1,-0.2 -6,-0.1 -2,-0.1 -0.871 62.5-104.6-132.7 164.3 20.7 22.3 44.4 47 57 A H > - 0 0 104 -2,-0.3 3,-2.0 1,-0.1 4,-0.3 -0.777 32.7-120.8 -90.2 143.0 18.3 21.9 47.3 48 58 A P G > S+ 0 0 35 0, 0.0 3,-1.7 0, 0.0 -1,-0.1 0.777 109.9 65.8 -52.4 -30.4 14.8 23.1 46.5 49 59 A D G 3 S+ 0 0 123 1,-0.3 33,-0.1 32,-0.0 -12,-0.0 0.653 93.5 61.3 -68.0 -19.5 14.9 25.7 49.3 50 60 A Q G < S+ 0 0 27 -3,-2.0 32,-2.9 31,-0.1 2,-0.4 0.614 89.8 97.9 -69.5 -18.0 17.7 27.6 47.4 51 61 A L E < +C 81 0A 6 -3,-1.7 2,-0.5 -4,-0.3 30,-0.2 -0.608 44.4 177.0 -95.8 129.1 15.3 28.2 44.6 52 62 A V E -C 80 0A 33 28,-2.4 28,-2.5 -2,-0.4 2,-0.4 -0.973 12.6-165.7-125.3 119.3 13.3 31.3 43.8 53 63 A L E -C 79 0A 0 -2,-0.5 7,-3.3 7,-0.3 2,-0.4 -0.854 4.8-173.2-108.6 138.3 11.2 31.3 40.7 54 64 A I E +CD 78 59A 44 24,-2.6 24,-2.6 -2,-0.4 2,-0.3 -0.995 9.9 167.6-132.6 135.0 9.7 34.4 39.2 55 65 A F E > S+ D 0 58A 36 3,-2.1 3,-1.9 -2,-0.4 22,-0.1 -0.980 75.8 3.9-146.5 140.0 7.3 34.9 36.2 56 66 A A T 3 S- 0 0 82 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.797 131.0 -63.3 53.4 33.0 5.3 38.0 35.3 57 67 A G T 3 S+ 0 0 73 1,-0.2 2,-0.4 21,-0.0 -1,-0.3 0.575 112.8 118.8 73.9 8.0 7.3 39.7 38.1 58 68 A K E < S-D 55 0A 146 -3,-1.9 -3,-2.1 11,-0.1 2,-0.4 -0.911 70.1-121.7-110.3 134.4 5.6 37.4 40.7 59 69 A I E -D 54 0A 117 -2,-0.4 -5,-0.3 -5,-0.2 2,-0.2 -0.608 40.3-122.9 -68.4 122.8 7.5 35.0 43.0 60 70 A L - 0 0 13 -7,-3.3 2,-0.4 -2,-0.4 -7,-0.3 -0.527 19.8-134.9 -80.3 143.2 5.9 31.6 42.1 61 71 A K > - 0 0 139 -2,-0.2 3,-2.0 1,-0.1 -28,-0.4 -0.810 15.7-119.6-107.6 136.8 4.3 29.5 44.9 62 72 A D T 3 S+ 0 0 54 -2,-0.4 -28,-2.4 1,-0.3 -29,-0.5 0.736 104.2 49.2 -41.4 -52.1 4.8 25.8 45.3 63 73 A P T 3 S+ 0 0 98 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.679 90.2 96.4 -69.9 -13.1 1.2 24.5 45.0 64 74 A D S < S- 0 0 45 -3,-2.0 -31,-2.7 -32,-0.1 -30,-0.2 -0.403 70.6-126.3 -80.8 153.2 0.4 26.3 41.7 65 75 A S B > -E 32 0B 17 -33,-0.3 4,-1.4 1,-0.1 -33,-0.3 -0.577 23.3-113.9 -88.1 159.9 0.6 24.8 38.3 66 76 A L H >>S+ 0 0 0 -35,-2.7 5,-2.4 -38,-0.2 4,-0.6 0.905 118.4 54.7 -54.0 -45.7 2.6 26.3 35.5 67 77 A A H >45S+ 0 0 56 -38,-1.5 3,-1.7 1,-0.2 -1,-0.2 0.935 106.0 50.9 -55.3 -51.0 -0.7 26.9 33.6 68 78 A Q H 345S+ 0 0 130 1,-0.3 -1,-0.2 2,-0.1 -2,-0.2 0.742 108.8 53.0 -54.9 -33.3 -2.3 28.8 36.6 69 79 A C H 3<5S- 0 0 27 -4,-1.4 -1,-0.3 -3,-0.4 -2,-0.2 0.566 119.3-112.3 -77.6 -14.0 0.8 31.0 36.7 70 80 A G T <<5 + 0 0 34 -3,-1.7 2,-0.5 -4,-0.6 -3,-0.2 0.581 65.2 149.4 87.3 11.5 0.5 31.8 33.0 71 81 A V < + 0 0 5 -5,-2.4 -1,-0.3 -6,-0.2 2,-0.3 -0.668 22.1 176.4 -79.5 124.0 3.6 30.0 32.0 72 82 A R > - 0 0 164 -2,-0.5 3,-2.1 -3,-0.1 -60,-0.0 -0.820 39.8 -61.5-126.0 167.9 3.2 28.6 28.4 73 83 A D T 3 S+ 0 0 99 -2,-0.3 -59,-0.2 1,-0.3 -1,-0.1 -0.181 121.0 14.2 -45.5 125.5 5.3 26.8 25.9 74 84 A G T 3 S+ 0 0 53 -61,-3.6 -1,-0.3 1,-0.3 -60,-0.2 0.436 97.5 125.1 87.1 -1.2 8.4 28.8 24.8 75 85 A L < - 0 0 46 -3,-2.1 -60,-3.0 -62,-0.3 2,-0.4 -0.371 56.7-116.1 -88.9 173.7 8.2 31.3 27.7 76 86 A T E -b 15 0A 56 -62,-0.2 2,-0.5 -2,-0.1 -60,-0.2 -0.909 17.2-165.4-118.0 126.9 10.9 32.2 30.3 77 87 A V E -b 16 0A 0 -62,-3.5 -60,-2.7 -2,-0.4 2,-0.3 -0.955 21.0-133.8-106.6 134.6 10.9 31.8 34.0 78 88 A H E -bC 17 54A 87 -24,-2.6 -24,-2.6 -2,-0.5 2,-0.4 -0.700 21.7-164.0 -85.2 138.4 13.5 33.6 36.0 79 89 A L E - C 0 53A 2 -62,-2.6 2,-0.5 -2,-0.3 -26,-0.2 -0.992 13.5-168.9-126.5 128.0 15.4 31.7 38.7 80 90 A V E - C 0 52A 65 -28,-2.5 -28,-2.4 -2,-0.4 2,-0.7 -0.982 10.5-158.2-110.5 127.7 17.5 32.9 41.6 81 91 A I E - C 0 51A 54 -2,-0.5 2,-0.3 -30,-0.2 -30,-0.2 -0.952 20.6-133.8-104.3 107.3 19.6 30.2 43.4 82 92 A K - 0 0 118 -32,-2.9 2,-0.2 -2,-0.7 -2,-0.0 -0.516 26.3-115.2 -64.8 126.8 20.3 31.5 46.8 83 93 A R - 0 0 185 -2,-0.3 2,-0.2 1,-0.1 -1,-0.1 -0.468 27.9-116.0 -67.6 132.2 24.1 30.8 47.5 84 94 A Q - 0 0 131 -2,-0.2 -1,-0.1 1,-0.1 -3,-0.0 -0.481 29.8-117.3 -67.1 138.6 24.8 28.3 50.4 85 95 A H - 0 0 150 -2,-0.2 -1,-0.1 1,-0.1 3,-0.1 -0.317 17.0-121.0 -64.6 158.3 26.6 29.8 53.4 86 96 A R S S+ 0 0 246 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.700 95.7 20.5 -66.5 -24.5 30.1 28.4 54.2 87 97 A A 0 0 80 1,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.970 360.0 360.0-148.4 156.5 28.7 27.4 57.7 88 98 A M 0 0 244 -2,-0.3 -3,-0.0 -3,-0.1 -2,-0.0 0.581 360.0 360.0 -64.5 360.0 25.4 26.7 59.5