==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 30-MAR-07 2YQD . COMPND 2 MOLECULE: POLYBROMO-1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL . 120 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8723.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 83 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 20 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 42.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 177.3 -18.2 26.3 -5.8 2 2 A S - 0 0 125 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.975 360.0-173.2-167.1 155.9 -14.9 24.6 -6.1 3 3 A S - 0 0 119 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.910 3.6-163.5-147.6 173.0 -11.1 25.3 -6.0 4 4 A G - 0 0 74 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.977 2.3-169.3-156.9 167.2 -7.7 23.6 -6.5 5 5 A S - 0 0 109 -2,-0.3 2,-0.3 3,-0.0 3,-0.1 -0.950 1.6-165.9-154.0 170.5 -4.0 23.8 -5.9 6 6 A S + 0 0 105 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.978 49.8 76.3-162.3 149.9 -0.6 22.4 -6.8 7 7 A G + 0 0 55 -2,-0.3 2,-0.7 1,-0.2 -1,-0.1 0.760 44.7 156.0 112.5 46.1 3.0 22.3 -5.7 8 8 A K + 0 0 88 1,-0.1 -1,-0.2 -3,-0.1 3,-0.0 -0.866 15.2 131.7-107.5 102.6 3.1 19.9 -2.7 9 9 A K + 0 0 137 -2,-0.7 2,-0.3 68,-0.0 -1,-0.1 0.067 63.5 50.6-135.0 22.2 6.6 18.4 -2.2 10 10 A S S S- 0 0 86 -3,-0.1 2,-1.1 67,-0.1 -3,-0.0 -0.928 101.2 -66.0-151.1 172.9 7.1 19.0 1.5 11 11 A K S S+ 0 0 189 -2,-0.3 2,-0.3 -3,-0.0 64,-0.1 -0.519 72.3 147.2 -69.1 97.9 5.4 18.4 4.9 12 12 A Y - 0 0 150 -2,-1.1 2,-0.6 62,-0.2 -4,-0.0 -0.944 54.4-101.2-134.6 155.5 2.4 20.7 4.7 13 13 A M + 0 0 144 -2,-0.3 -2,-0.0 2,-0.0 3,-0.0 -0.659 52.0 162.3 -79.5 115.3 -1.2 20.7 6.0 14 14 A T > - 0 0 36 -2,-0.6 3,-1.4 1,-0.1 4,-0.1 -0.967 48.2-129.5-135.9 151.2 -3.6 19.5 3.3 15 15 A P G > S+ 0 0 108 0, 0.0 3,-1.4 0, 0.0 4,-0.4 0.690 104.1 72.7 -69.7 -18.9 -7.1 18.2 3.1 16 16 A M G 3> S+ 0 0 39 1,-0.3 4,-1.5 2,-0.2 3,-0.3 0.599 76.2 81.0 -71.7 -10.3 -5.9 15.3 1.0 17 17 A Q G <4 S+ 0 0 93 -3,-1.4 4,-0.5 1,-0.2 -1,-0.3 0.644 83.6 63.0 -69.8 -13.9 -4.3 13.9 4.1 18 18 A Q T <> S+ 0 0 123 -3,-1.4 4,-2.5 2,-0.2 3,-0.3 0.893 102.3 46.4 -77.2 -42.4 -7.7 12.5 5.0 19 19 A K H >>S+ 0 0 44 -4,-0.4 4,-2.5 -3,-0.3 5,-0.5 0.982 100.7 63.3 -63.6 -59.6 -8.0 10.2 2.0 20 20 A L H X5S+ 0 0 6 -4,-1.5 4,-0.9 1,-0.2 -1,-0.2 0.782 114.2 38.9 -35.2 -34.3 -4.5 8.7 2.3 21 21 A N H >5S+ 0 0 48 -4,-0.5 4,-3.0 -3,-0.3 5,-0.3 0.940 112.9 51.7 -83.8 -55.9 -5.8 7.4 5.6 22 22 A E H X5S+ 0 0 107 -4,-2.5 4,-3.0 1,-0.2 -2,-0.2 0.921 113.3 46.3 -46.2 -54.2 -9.4 6.5 4.7 23 23 A V H X5S+ 0 0 6 -4,-2.5 4,-1.5 2,-0.2 -1,-0.2 0.921 111.9 51.7 -56.5 -47.2 -8.2 4.4 1.7 24 24 A Y H >X S+ 0 0 1 -9,-0.4 3,-1.3 -12,-0.3 4,-0.4 0.649 90.5 81.7 -78.0 -15.7 -4.3 -7.5 5.7 40 40 A A G >> S+ 0 0 38 1,-0.3 3,-0.9 2,-0.2 4,-0.7 0.909 94.9 43.3 -54.9 -45.4 -3.8 -9.5 8.9 41 41 A I G 34 S+ 0 0 76 -4,-0.5 -1,-0.3 -3,-0.5 -2,-0.2 0.495 118.0 48.0 -79.4 -3.2 -1.3 -11.7 7.2 42 42 A F G <4 S+ 0 0 16 -3,-1.3 22,-1.7 -4,-0.1 23,-0.2 0.255 93.8 78.4-117.7 7.6 0.2 -8.6 5.6 43 43 A L T <4 S+ 0 0 39 -3,-0.9 22,-0.5 -4,-0.4 2,-0.4 0.958 102.0 20.4 -80.2 -57.7 0.4 -6.6 8.8 44 44 A R S < S- 0 0 222 -4,-0.7 -1,-0.3 20,-0.1 0, 0.0 -0.942 70.7-156.9-119.0 137.3 3.5 -8.1 10.5 45 45 A L - 0 0 61 -2,-0.4 2,-0.2 -3,-0.1 -3,-0.1 -0.838 28.0-100.8-113.2 149.9 6.3 -10.0 8.8 46 46 A P - 0 0 40 0, 0.0 8,-0.1 0, 0.0 -1,-0.0 -0.483 39.8-124.4 -69.8 129.3 8.7 -12.6 10.3 47 47 A S > - 0 0 64 -2,-0.2 4,-2.2 1,-0.1 7,-0.2 0.015 29.8 -96.3 -63.5 177.0 12.2 -11.2 11.0 48 48 A R T 4 S+ 0 0 173 1,-0.2 5,-0.1 2,-0.2 6,-0.1 0.936 124.1 55.5 -62.7 -48.5 15.4 -12.7 9.5 49 49 A S T 4 S+ 0 0 120 2,-0.2 -1,-0.2 1,-0.1 -2,-0.0 0.873 117.6 37.1 -52.4 -40.3 16.1 -14.7 12.7 50 50 A E T 4 S+ 0 0 147 1,-0.2 -2,-0.2 2,-0.1 3,-0.2 0.984 138.1 8.7 -75.6 -74.1 12.6 -16.2 12.3 51 51 A L S >X S+ 0 0 61 -4,-2.2 4,-0.6 1,-0.2 3,-0.5 -0.719 70.6 155.6-113.8 80.7 12.1 -16.7 8.6 52 52 A P H >> + 0 0 49 0, 0.0 4,-1.5 0, 0.0 3,-0.6 0.911 67.7 68.5 -69.7 -44.6 15.4 -15.9 6.9 53 53 A D H 3> S+ 0 0 104 1,-0.2 4,-1.0 2,-0.2 5,-0.1 0.751 92.5 67.1 -47.1 -24.7 14.8 -18.0 3.8 54 54 A Y H X> S+ 0 0 8 -3,-0.5 4,-2.4 2,-0.2 3,-1.6 0.981 97.4 46.7 -61.8 -60.0 12.2 -15.3 3.1 55 55 A Y H << S+ 0 0 96 -3,-0.6 -1,-0.2 -4,-0.6 -2,-0.2 0.873 106.5 60.9 -50.3 -41.1 14.6 -12.4 2.5 56 56 A L H 3< S+ 0 0 125 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.829 114.2 36.0 -56.9 -32.6 16.6 -14.7 0.3 57 57 A T H << S+ 0 0 79 -3,-1.6 2,-0.9 -4,-1.0 -2,-0.2 0.952 117.8 47.1 -84.6 -62.5 13.5 -15.0 -1.9 58 58 A I < + 0 0 15 -4,-2.4 -1,-0.2 1,-0.2 34,-0.0 -0.736 59.2 178.8 -87.6 104.7 12.0 -11.5 -1.8 59 59 A K S S+ 0 0 169 -2,-0.9 -1,-0.2 1,-0.3 -4,-0.1 0.784 82.3 45.5 -73.7 -28.0 14.8 -9.0 -2.3 60 60 A K S S- 0 0 152 -3,-0.1 2,-0.3 28,-0.1 -1,-0.3 -0.632 80.5-173.7-117.8 72.3 12.3 -6.1 -2.1 61 61 A P - 0 0 40 0, 0.0 2,-0.4 0, 0.0 28,-0.1 -0.494 2.3-170.2 -69.7 127.0 10.1 -7.0 1.0 62 62 A M - 0 0 11 -2,-0.3 2,-0.3 27,-0.1 -2,-0.0 -0.980 3.3-173.3-124.7 128.8 7.2 -4.6 1.5 63 63 A D >> - 0 0 50 -2,-0.4 4,-0.8 1,-0.1 3,-0.7 -0.836 37.7-115.4-118.7 156.8 4.9 -4.5 4.5 64 64 A M H 3> S+ 0 0 0 -22,-1.7 4,-2.0 -2,-0.3 3,-0.2 0.831 115.4 62.3 -56.6 -33.1 1.7 -2.6 5.3 65 65 A E H 3> S+ 0 0 70 -22,-0.5 4,-3.0 -23,-0.2 5,-0.3 0.900 90.5 67.4 -60.2 -42.4 3.7 -0.8 8.0 66 66 A K H <> S+ 0 0 90 -3,-0.7 4,-1.6 1,-0.2 5,-0.2 0.917 109.7 34.4 -42.5 -58.7 6.1 0.7 5.5 67 67 A I H X S+ 0 0 0 -4,-0.8 4,-3.1 2,-0.2 5,-0.2 0.984 119.6 49.4 -62.8 -60.6 3.3 2.8 4.0 68 68 A R H X S+ 0 0 100 -4,-2.0 4,-3.1 1,-0.2 5,-0.4 0.932 108.8 52.9 -42.8 -65.0 1.4 3.5 7.2 69 69 A S H X S+ 0 0 63 -4,-3.0 4,-1.3 1,-0.2 -1,-0.2 0.900 118.5 35.0 -36.6 -67.7 4.5 4.6 9.1 70 70 A H H ><>S+ 0 0 64 -4,-1.6 3,-1.8 -5,-0.3 5,-0.9 0.974 116.3 54.4 -53.9 -63.1 5.5 7.1 6.5 71 71 A M H ><5S+ 0 0 10 -4,-3.1 3,-2.1 1,-0.3 4,-0.3 0.890 103.5 55.7 -36.1 -62.9 2.0 8.2 5.6 72 72 A M H 3<5S+ 0 0 107 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.839 104.5 55.7 -41.2 -40.4 1.2 9.0 9.2 73 73 A A T <<5S- 0 0 55 -3,-1.8 -1,-0.3 -4,-1.3 -2,-0.2 -0.052 120.7-111.7 -86.2 33.7 4.2 11.3 9.1 74 74 A N T < 5S+ 0 0 34 -3,-2.1 -3,-0.2 1,-0.1 -62,-0.2 0.856 77.5 136.1 36.5 49.3 2.7 13.1 6.1 75 75 A K < + 0 0 131 -5,-0.9 -4,-0.2 -4,-0.3 -1,-0.1 0.900 43.8 76.2 -88.0 -49.5 5.5 11.7 4.0 76 76 A Y - 0 0 24 -9,-0.2 3,-0.1 1,-0.1 -56,-0.0 0.068 63.6-154.6 -54.7 173.0 3.6 10.6 0.9 77 77 A Q + 0 0 100 1,-0.5 2,-0.3 -68,-0.1 -1,-0.1 0.714 64.5 3.1-117.2 -61.0 2.4 13.1 -1.7 78 78 A D S >> S- 0 0 60 1,-0.1 3,-1.0 -58,-0.0 4,-0.9 -0.821 71.3-105.6-128.3 167.9 -0.7 11.8 -3.5 79 79 A I H >> S+ 0 0 19 -2,-0.3 4,-2.3 1,-0.3 3,-0.9 0.883 119.2 59.9 -59.4 -39.9 -2.9 8.7 -3.4 80 80 A D H 3> S+ 0 0 65 1,-0.3 4,-2.0 2,-0.2 -1,-0.3 0.773 99.0 59.7 -59.8 -25.8 -1.3 7.4 -6.6 81 81 A S H <4 S+ 0 0 23 -3,-1.0 4,-0.3 2,-0.2 -1,-0.3 0.830 108.6 42.4 -72.1 -32.9 2.0 7.4 -4.7 82 82 A M H XX S+ 0 0 0 -3,-0.9 4,-1.9 -4,-0.9 3,-0.6 0.867 113.0 52.3 -80.5 -39.6 0.6 5.0 -2.1 83 83 A V H 3X S+ 0 0 8 -4,-2.3 4,-2.2 1,-0.2 -2,-0.2 0.962 98.4 62.2 -60.9 -54.4 -1.1 2.8 -4.6 84 84 A E H 3X S+ 0 0 110 -4,-2.0 4,-0.7 1,-0.2 -1,-0.2 0.768 109.0 47.5 -43.1 -27.9 2.0 2.2 -6.7 85 85 A D H X> S+ 0 0 37 -3,-0.6 4,-1.5 -4,-0.3 3,-1.2 0.961 103.8 54.9 -79.6 -58.6 3.4 0.7 -3.6 86 86 A F H 3X S+ 0 0 0 -4,-1.9 4,-1.5 1,-0.3 5,-0.2 0.851 99.9 66.2 -42.7 -41.7 0.5 -1.6 -2.6 87 87 A V H >X S+ 0 0 46 -4,-2.2 4,-3.0 1,-0.2 3,-0.8 0.923 101.0 46.6 -47.4 -53.5 0.8 -3.1 -6.0 88 88 A M H S+ 0 0 72 -3,-1.2 4,-2.2 -4,-0.7 5,-0.5 0.913 101.6 65.8 -56.9 -45.5 4.2 -4.5 -5.3 89 89 A M H 3X5S+ 0 0 3 -4,-1.5 4,-0.7 1,-0.2 -1,-0.2 0.859 114.9 31.0 -44.6 -41.7 3.0 -5.9 -1.9 90 90 A F H X5S+ 0 0 111 -4,-3.0 4,-0.7 -5,-0.2 3,-0.7 0.943 108.3 38.5 -45.8 -62.6 3.0 -8.6 -7.0 92 92 A N H >X5S+ 0 0 29 -4,-2.2 4,-3.1 1,-0.2 3,-1.3 0.881 109.7 63.5 -58.0 -39.8 5.7 -10.4 -5.0 93 93 A A H 3X - 0 0 121 -2,-0.2 3,-1.1 1,-0.1 6,-0.2 -0.345 27.4-118.1 -71.6 152.1 1.7 -20.7 -4.0 99 99 A P T 3 S+ 0 0 72 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.434 114.6 50.8 -69.7 2.5 -0.9 -20.2 -6.8 100 100 A E T 3 S+ 0 0 176 4,-0.0 2,-0.2 5,-0.0 -2,-0.1 -0.204 89.8 105.5-133.9 42.5 -3.2 -22.3 -4.6 101 101 A S S <> S- 0 0 48 -3,-1.1 4,-1.0 1,-0.1 5,-0.2 -0.549 76.2-113.5-114.3-179.6 -3.0 -20.6 -1.2 102 102 A L H > S+ 0 0 87 -2,-0.2 4,-1.4 2,-0.2 5,-0.1 0.810 115.5 50.7 -84.3 -33.1 -5.3 -18.4 0.8 103 103 A I H > S+ 0 0 18 3,-0.2 4,-2.3 2,-0.2 -1,-0.1 0.773 105.3 60.4 -74.9 -27.0 -3.0 -15.3 0.6 104 104 A Y H > S+ 0 0 65 -6,-0.2 4,-1.6 2,-0.2 3,-0.2 0.999 112.1 32.3 -62.9 -70.1 -2.8 -15.7 -3.2 105 105 A K H X S+ 0 0 106 -4,-1.0 4,-1.4 1,-0.2 -1,-0.2 0.864 118.6 57.9 -56.2 -37.8 -6.4 -15.3 -4.1 106 106 A D H X S+ 0 0 3 -4,-1.4 4,-1.9 1,-0.2 3,-0.3 0.921 101.2 55.4 -59.4 -46.2 -6.8 -12.9 -1.2 107 107 A A H X S+ 0 0 5 -4,-2.3 4,-1.6 -3,-0.2 -1,-0.2 0.945 100.8 57.4 -51.9 -55.2 -4.1 -10.6 -2.5 108 108 A L H X S+ 0 0 102 -4,-1.6 4,-2.4 1,-0.2 3,-0.5 0.880 106.6 51.0 -43.4 -46.8 -5.9 -10.2 -5.8 109 109 A V H X S+ 0 0 36 -4,-1.4 4,-2.7 -3,-0.3 5,-0.2 0.956 104.6 54.2 -57.8 -54.2 -8.9 -8.9 -4.0 110 110 A L H X S+ 0 0 1 -4,-1.9 4,-1.4 1,-0.2 -1,-0.2 0.772 111.3 50.1 -52.3 -26.1 -7.0 -6.3 -1.9 111 111 A H H X S+ 0 0 58 -4,-1.6 4,-2.1 -3,-0.5 -2,-0.2 0.949 109.6 45.4 -78.1 -53.5 -5.8 -5.1 -5.3 112 112 A K H < S+ 0 0 106 -4,-2.4 4,-0.4 1,-0.2 -2,-0.2 0.822 113.2 54.4 -59.7 -31.5 -9.1 -4.8 -7.1 113 113 A V H >X S+ 0 0 17 -4,-2.7 4,-1.8 -5,-0.2 3,-1.2 0.938 109.1 44.6 -68.4 -48.5 -10.4 -3.1 -3.9 114 114 A L H 3X S+ 0 0 0 -4,-1.4 4,-1.3 1,-0.3 -2,-0.2 0.820 107.0 61.1 -65.5 -31.1 -7.7 -0.4 -3.8 115 115 A L H 3< S+ 0 0 100 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.656 107.7 46.4 -70.1 -14.8 -8.2 0.1 -7.6 116 116 A E H <4 S+ 0 0 130 -3,-1.2 -2,-0.2 -4,-0.4 -1,-0.2 0.850 99.3 65.1 -93.1 -43.6 -11.8 1.1 -6.8 117 117 A T H < S+ 0 0 44 -4,-1.8 -2,-0.2 -94,-0.1 -3,-0.1 0.916 77.1 101.5 -44.1 -55.9 -11.2 3.5 -3.9 118 118 A R < - 0 0 113 -4,-1.3 2,-0.4 1,-0.1 -3,-0.0 0.022 65.6-150.0 -34.5 129.2 -9.3 5.9 -6.1 119 119 A R 0 0 192 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.911 360.0 360.0-113.9 137.8 -11.6 8.8 -7.0 120 120 A D 0 0 204 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.1 0.844 360.0 360.0 -72.1 360.0 -11.6 10.8 -10.2