==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 30-MAR-07 2YQE . COMPND 2 MOLECULE: JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1D; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7605.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 74.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 45.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 72 A G 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -89.5 35.0 -9.6 8.0 2 73 A S - 0 0 126 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.933 360.0-163.5-131.3 154.4 33.0 -7.5 5.5 3 74 A S - 0 0 129 -2,-0.3 2,-0.1 1,-0.1 0, 0.0 -0.861 1.6-167.0-132.3 166.6 29.7 -5.7 5.6 4 75 A G - 0 0 74 -2,-0.3 2,-0.3 0, 0.0 -1,-0.1 -0.118 20.3-109.9-125.2-137.7 27.2 -4.2 3.2 5 76 A S - 0 0 114 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.878 30.1 -97.2-170.5 135.4 24.1 -2.0 3.2 6 77 A S + 0 0 129 -2,-0.3 2,-0.1 1,-0.1 0, 0.0 -0.243 57.4 143.1 -55.8 138.5 20.4 -2.3 2.7 7 78 A G - 0 0 51 0, 0.0 4,-0.4 0, 0.0 3,-0.2 -0.363 64.5 -35.1-144.7-135.2 19.3 -1.3 -0.8 8 79 A T S S+ 0 0 78 1,-0.2 4,-0.2 -2,-0.1 -2,-0.1 -0.150 98.5 105.2 -94.8 38.6 16.8 -2.3 -3.4 9 80 A R S >> S+ 0 0 194 2,-0.1 3,-1.1 3,-0.1 4,-0.8 0.972 90.0 19.4 -79.3 -74.1 17.0 -6.0 -2.5 10 81 A V H >> S+ 0 0 73 1,-0.3 4,-1.4 2,-0.2 3,-0.9 0.890 109.8 78.0 -64.9 -40.5 13.8 -6.9 -0.6 11 82 A K H 3> S+ 0 0 75 -4,-0.4 4,-0.6 1,-0.3 -1,-0.3 0.760 98.1 48.4 -39.9 -27.9 12.0 -3.8 -2.0 12 83 A L H X> S+ 0 0 77 -3,-1.1 4,-2.6 -4,-0.2 3,-0.8 0.877 96.2 67.9 -82.2 -41.6 11.7 -6.0 -5.1 13 84 A N H S+ 0 0 27 -4,-2.4 4,-2.4 -5,-0.3 5,-0.5 0.979 101.5 56.4 -69.0 -58.6 2.8 -9.7 -8.9 20 91 A K H <5S+ 0 0 122 -4,-2.6 4,-0.3 1,-0.3 -1,-0.2 0.749 113.0 47.2 -45.6 -24.7 3.2 -13.5 -9.0 21 92 A F H X5S+ 0 0 16 -4,-1.2 4,-1.5 2,-0.1 -1,-0.3 0.871 118.0 37.9 -85.6 -42.4 -0.2 -13.4 -7.3 22 93 A W H X5S+ 0 0 47 -4,-1.8 4,-2.0 -3,-0.4 3,-0.3 0.978 107.9 60.0 -72.6 -59.3 -1.9 -10.9 -9.7 23 94 A E H <5S+ 0 0 126 -4,-2.4 -1,-0.2 1,-0.3 -3,-0.2 0.783 109.0 50.4 -39.3 -32.0 -0.3 -12.0 -13.0 24 95 A I H 4> + 0 0 37 -2,-0.4 4,-1.7 1,-0.2 3,-1.4 -0.579 22.3 177.5 -90.5 74.2 6.1 2.8 -3.2 41 112 A L H 3> S+ 0 0 20 -2,-1.5 4,-1.7 1,-0.3 5,-0.2 0.723 79.7 63.6 -48.5 -20.9 3.5 0.2 -2.2 42 113 A Y H 3> S+ 0 0 52 2,-0.2 4,-2.4 3,-0.2 -1,-0.3 0.921 103.8 42.7 -71.3 -45.6 6.6 -1.5 -0.7 43 114 A S H <> S+ 0 0 27 -3,-1.4 4,-3.1 2,-0.2 5,-0.2 0.959 113.7 51.0 -65.6 -52.8 7.2 1.3 1.8 44 115 A L H X S+ 0 0 12 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.952 116.0 40.4 -49.0 -60.5 3.6 1.8 2.8 45 116 A S H X S+ 0 0 0 -4,-1.7 4,-2.4 1,-0.2 5,-0.2 0.946 115.3 52.5 -55.1 -52.9 2.9 -1.9 3.5 46 117 A K H X S+ 0 0 76 -4,-2.4 4,-2.1 -5,-0.2 -2,-0.2 0.950 110.0 47.5 -48.0 -61.5 6.3 -2.3 5.2 47 118 A I H >X S+ 0 0 16 -4,-3.1 4,-3.1 2,-0.2 3,-0.6 0.945 110.9 50.8 -45.3 -64.3 5.8 0.6 7.6 48 119 A V H 3X>S+ 0 0 0 -4,-2.2 4,-2.2 1,-0.3 5,-1.2 0.912 108.0 51.8 -39.3 -64.2 2.3 -0.5 8.6 49 120 A I H 3<5S+ 0 0 87 -4,-2.4 4,-0.4 1,-0.2 -1,-0.3 0.871 114.9 44.4 -42.3 -46.3 3.4 -4.1 9.4 50 121 A E H <<5S+ 0 0 153 -4,-2.1 -1,-0.2 -3,-0.6 -2,-0.2 0.966 105.1 60.1 -65.3 -54.7 6.1 -2.6 11.6 51 122 A E H <5S- 0 0 57 -4,-3.1 -2,-0.2 -5,-0.2 -1,-0.2 0.878 136.2 -73.4 -39.5 -50.9 3.9 0.0 13.3 52 123 A G T <5S- 0 0 42 -4,-2.2 4,-0.5 -5,-0.2 -3,-0.2 0.393 78.2 -68.0 155.4 35.1 1.7 -2.8 14.6 53 124 A G >< - 0 0 27 -5,-1.2 4,-1.0 -4,-0.4 -1,-0.2 -0.309 59.7 -76.5 90.9-177.7 -0.4 -4.3 11.8 54 125 A Y H > S+ 0 0 50 2,-0.2 4,-2.3 3,-0.1 5,-0.2 0.896 126.2 50.4 -87.4 -47.9 -3.3 -2.8 9.8 55 126 A E H > S+ 0 0 163 2,-0.2 4,-2.2 3,-0.2 5,-0.1 0.886 113.8 48.4 -57.8 -40.7 -6.0 -3.1 12.4 56 127 A A H >> S+ 0 0 48 -4,-0.5 4,-2.3 2,-0.2 3,-0.5 0.998 115.2 39.2 -63.1 -68.9 -3.8 -1.4 14.9 57 128 A I H 3<>S+ 0 0 4 -4,-1.0 5,-3.1 1,-0.3 6,-0.6 0.810 117.4 54.8 -52.0 -31.4 -2.6 1.6 12.9 58 129 A C H ><5S+ 0 0 13 -4,-2.3 3,-1.3 3,-0.2 -1,-0.3 0.900 106.8 48.3 -70.1 -42.2 -6.1 1.7 11.5 59 130 A K H <<5S+ 0 0 177 -4,-2.2 -2,-0.2 -3,-0.5 -1,-0.2 0.865 114.2 46.5 -66.3 -36.9 -7.7 1.9 14.9 60 131 A D T 3<5S- 0 0 115 -4,-2.3 -1,-0.3 -5,-0.1 -2,-0.2 0.106 108.4-126.2 -92.0 21.4 -5.3 4.7 16.0 61 132 A R T X 5 + 0 0 190 -3,-1.3 3,-1.0 1,-0.2 4,-0.2 0.816 57.5 153.1 35.4 41.3 -5.9 6.5 12.7 62 133 A R T >>< + 0 0 109 -5,-3.1 4,-2.5 1,-0.2 3,-1.2 0.644 39.8 101.6 -71.3 -14.1 -2.1 6.4 12.4 63 134 A W H 3> S+ 0 0 9 -6,-0.6 4,-1.9 1,-0.3 -1,-0.2 0.810 75.8 60.6 -38.3 -37.4 -2.7 6.5 8.6 64 135 A A H <> S+ 0 0 63 -3,-1.0 4,-2.1 1,-0.2 -1,-0.3 0.949 109.2 38.6 -58.2 -52.6 -1.7 10.2 9.0 65 136 A R H <> S+ 0 0 170 -3,-1.2 4,-1.8 -4,-0.2 -2,-0.2 0.884 111.4 59.6 -66.4 -39.7 1.7 9.5 10.4 66 137 A V H X S+ 0 0 3 -4,-2.5 4,-0.5 1,-0.2 -1,-0.2 0.854 109.4 44.6 -57.3 -36.1 2.2 6.5 8.0 67 138 A A H ><>S+ 0 0 6 -4,-1.9 3,-1.4 -5,-0.3 5,-0.8 0.940 109.9 51.9 -74.1 -49.9 1.7 8.9 5.1 68 139 A Q H ><5S+ 0 0 89 -4,-2.1 3,-2.0 1,-0.3 -2,-0.2 0.773 97.1 72.1 -58.0 -26.1 4.0 11.7 6.4 69 140 A R H 3<5S+ 0 0 159 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.874 93.4 52.8 -57.6 -38.9 6.6 9.0 6.9 70 141 A L T <<5S- 0 0 52 -3,-1.4 -1,-0.3 -4,-0.5 -2,-0.2 0.221 127.0-103.2 -82.4 16.1 7.1 8.8 3.1 71 142 A H T < 5 + 0 0 179 -3,-2.0 -3,-0.2 1,-0.2 -2,-0.2 0.917 63.5 172.5 63.4 44.7 7.6 12.6 3.1 72 143 A Y < - 0 0 21 -5,-0.8 -1,-0.2 1,-0.1 -37,-0.0 -0.485 42.7 -90.4 -85.2 156.0 4.1 13.3 1.8 73 144 A P > - 0 0 40 0, 0.0 3,-1.2 0, 0.0 2,-0.7 -0.524 40.0-134.3 -69.8 110.4 2.5 16.7 1.6 74 145 A P T 3 S+ 0 0 103 0, 0.0 3,-0.1 0, 0.0 -10,-0.0 -0.536 87.4 41.7 -69.7 108.3 0.7 17.4 4.8 75 146 A G T 3 S+ 0 0 75 -2,-0.7 2,-0.2 1,-0.6 0, 0.0 -0.012 85.1 98.8 147.4 -34.6 -2.7 18.9 3.9 76 147 A K S < S- 0 0 135 -3,-1.2 2,-3.0 1,-0.1 -1,-0.6 -0.560 87.5-101.0 -83.9 147.2 -4.0 16.8 1.0 77 148 A N S > S+ 0 0 134 1,-0.2 4,-0.6 -2,-0.2 -1,-0.1 -0.360 75.3 132.3 -66.5 72.9 -6.4 14.0 1.5 78 149 A I H > + 0 0 7 -2,-3.0 4,-2.3 2,-0.2 3,-0.3 0.892 54.0 67.8 -90.7 -50.0 -3.7 11.3 1.3 79 150 A G H > S+ 0 0 23 -3,-0.4 4,-2.2 1,-0.3 5,-0.2 0.851 104.1 47.3 -36.1 -50.7 -4.6 9.2 4.3 80 151 A S H > S+ 0 0 78 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.938 109.4 53.3 -60.0 -49.3 -7.8 8.1 2.6 81 152 A L H X S+ 0 0 55 -4,-0.6 4,-2.7 -3,-0.3 5,-0.3 0.939 111.8 45.4 -51.2 -54.0 -6.0 7.4 -0.7 82 153 A L H X S+ 0 0 3 -4,-2.3 4,-2.6 1,-0.2 5,-0.2 0.981 110.2 51.2 -54.3 -65.8 -3.5 5.1 1.0 83 154 A R H X S+ 0 0 95 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.841 115.9 46.4 -40.4 -41.6 -6.0 3.1 3.1 84 155 A S H X S+ 0 0 50 -4,-2.3 4,-2.5 -5,-0.2 5,-0.3 0.999 107.4 50.8 -66.7 -69.8 -7.9 2.6 -0.1 85 156 A H H X>S+ 0 0 41 -4,-2.7 4,-3.1 1,-0.2 5,-1.3 0.815 113.4 51.6 -37.0 -39.2 -5.2 1.5 -2.5 86 157 A Y H <5S+ 0 0 17 -4,-2.6 5,-0.3 -5,-0.3 4,-0.3 0.976 114.7 37.6 -65.4 -57.2 -4.2 -1.0 0.2 87 158 A E H <5S+ 0 0 98 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.598 120.4 52.9 -70.8 -10.1 -7.7 -2.5 0.7 88 159 A R H <5S- 0 0 176 -4,-2.5 -2,-0.2 -5,-0.1 -1,-0.2 0.885 136.5 -3.1 -90.2 -48.2 -8.1 -2.1 -3.1 89 160 A I T X5S+ 0 0 39 -4,-3.1 4,-1.2 -5,-0.3 -3,-0.2 0.728 136.8 51.0-112.4 -42.0 -5.0 -3.9 -4.2 90 161 A I H > S+ 0 0 137 -5,-0.3 4,-2.1 -6,-0.3 5,-0.2 0.980 101.8 27.5 -72.4 -60.7 -6.4 -6.4 0.2 92 163 A P H > S+ 0 0 16 0, 0.0 4,-2.6 0, 0.0 5,-0.4 0.882 117.2 60.6 -69.7 -40.2 -6.3 -9.7 -1.7 93 164 A Y H X S+ 0 0 10 -4,-1.2 4,-1.8 2,-0.2 -2,-0.2 0.880 114.6 36.0 -55.6 -40.3 -2.5 -9.8 -1.8 94 165 A E H < S+ 0 0 47 -4,-0.9 -3,-0.1 2,-0.2 -1,-0.1 0.982 116.5 48.1 -76.9 -66.3 -2.4 -9.7 2.0 95 166 A M H >< S+ 0 0 110 -4,-2.1 3,-0.7 -5,-0.3 -2,-0.2 0.843 118.9 45.1 -42.7 -40.1 -5.4 -11.8 3.0 96 167 A F H 3< S+ 0 0 123 -4,-2.6 2,-0.7 1,-0.2 -1,-0.2 0.954 113.8 46.2 -71.2 -52.1 -4.1 -14.4 0.4 97 168 A Q T 3< S+ 0 0 96 -4,-1.8 2,-0.5 -5,-0.4 -1,-0.2 -0.153 93.6 109.6 -84.7 41.3 -0.4 -14.3 1.5 98 169 A S < + 0 0 85 -3,-0.7 -4,-0.0 -2,-0.7 -3,-0.0 -0.970 67.1 17.8-123.6 120.5 -1.5 -14.5 5.1 99 170 A G 0 0 78 -2,-0.5 -1,-0.2 1,-0.1 0, 0.0 0.690 360.0 360.0 90.3 109.7 -0.9 -17.6 7.2 100 171 A A 0 0 158 -3,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.498 360.0 360.0 -79.4 360.0 1.6 -20.3 6.2