==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 30-MAR-07 2YQM . COMPND 2 MOLECULE: RUN AND FYVE DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8440.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 36.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 140 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-160.9 1.1 -37.3 56.2 2 2 A S - 0 0 120 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.996 360.0-174.7-139.8 131.9 2.0 -34.1 54.4 3 3 A S + 0 0 122 -2,-0.4 2,-0.1 2,-0.0 0, 0.0 -0.830 16.2 176.5-129.1 93.8 5.1 -33.0 52.6 4 4 A G - 0 0 70 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.368 13.7-155.5 -90.9 173.1 5.1 -29.5 51.3 5 5 A S - 0 0 130 -2,-0.1 2,-0.4 0, 0.0 -2,-0.0 -0.884 2.2-162.3-154.9 117.9 7.9 -27.5 49.6 6 6 A S + 0 0 134 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.818 41.5 102.1-103.7 140.4 8.3 -23.7 49.5 7 7 A G - 0 0 66 -2,-0.4 2,-0.4 2,-0.0 -1,-0.0 0.102 34.6-175.8 147.2 94.4 10.5 -21.9 46.9 8 8 A I - 0 0 141 2,-0.0 2,-0.8 0, 0.0 -2,-0.0 -0.885 24.4-130.0-112.4 141.2 9.4 -20.1 43.8 9 9 A K + 0 0 210 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.785 37.4 169.2 -92.0 108.2 11.7 -18.5 41.2 10 10 A E - 0 0 173 -2,-0.8 2,-0.4 0, 0.0 -2,-0.0 -0.814 19.9-151.1-117.8 158.7 10.7 -14.9 40.5 11 11 A V - 0 0 114 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.992 22.4-113.0-133.1 138.0 12.3 -12.1 38.6 12 12 A N - 0 0 152 -2,-0.4 2,-0.4 2,-0.0 0, 0.0 -0.364 32.4-169.0 -66.9 144.0 12.1 -8.3 39.0 13 13 A Q + 0 0 169 -2,-0.1 -1,-0.0 1,-0.0 -2,-0.0 -0.983 28.7 135.3-141.4 126.8 10.3 -6.4 36.3 14 14 A A - 0 0 79 -2,-0.4 2,-0.2 2,-0.0 -1,-0.0 -0.228 25.5-173.6-167.7 64.8 10.2 -2.6 35.7 15 15 A L - 0 0 164 1,-0.1 2,-0.4 2,-0.0 -2,-0.0 -0.441 15.6-144.3 -68.3 135.1 10.8 -1.5 32.1 16 16 A K - 0 0 190 -2,-0.2 2,-0.7 2,-0.1 -1,-0.1 -0.821 2.6-140.8-104.2 141.3 11.0 2.2 31.6 17 17 A G + 0 0 81 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.882 39.1 141.3-106.0 112.9 9.7 4.1 28.6 18 18 A H + 0 0 165 -2,-0.7 2,-0.3 2,-0.0 -2,-0.1 -0.749 15.3 127.7-152.9 99.1 11.9 6.9 27.3 19 19 A A - 0 0 72 -2,-0.2 2,-0.2 2,-0.1 -2,-0.0 -0.868 58.3-112.6-157.9 119.1 12.4 7.6 23.6 20 20 A W + 0 0 232 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.307 53.1 157.6 -53.6 115.2 11.9 10.8 21.6 21 21 A L + 0 0 147 -2,-0.2 2,-0.3 2,-0.0 -2,-0.1 -0.999 15.3 165.6-146.1 143.8 8.9 10.1 19.3 22 22 A K - 0 0 159 -2,-0.3 2,-0.4 3,-0.0 5,-0.1 -0.894 10.6-178.0-161.5 127.4 6.3 12.3 17.5 23 23 A D + 0 0 104 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.771 35.5 126.4-131.3 87.9 3.8 11.5 14.7 24 24 A D S S+ 0 0 153 -2,-0.4 -1,-0.1 1,-0.0 0, 0.0 0.776 84.4 30.2-106.6 -44.4 1.9 14.6 13.6 25 25 A E S S- 0 0 172 -3,-0.1 -2,-0.0 0, 0.0 -1,-0.0 -0.109 124.8 -88.0-108.0 33.8 2.4 14.7 9.9 26 26 A A + 0 0 21 1,-0.1 10,-0.1 25,-0.0 -3,-0.1 0.962 57.5 178.0 60.7 54.7 2.7 11.0 9.5 27 27 A T + 0 0 68 -5,-0.1 9,-1.0 8,-0.1 2,-0.3 0.879 68.2 13.5 -54.5 -40.6 6.5 10.9 10.1 28 28 A H B S-A 35 0A 69 7,-0.2 7,-0.2 1,-0.1 23,-0.1 -0.842 96.7 -78.2-132.7 169.5 6.4 7.1 9.8 29 29 A C - 0 0 9 5,-1.3 23,-0.2 -2,-0.3 -1,-0.1 -0.183 29.2-134.6 -64.3 160.1 4.0 4.4 8.5 30 30 A R S S+ 0 0 181 21,-0.8 -1,-0.1 3,-0.1 22,-0.1 0.009 98.0 23.7-105.5 26.1 1.1 3.2 10.7 31 31 A Q S S+ 0 0 75 3,-0.1 21,-0.1 43,-0.0 -2,-0.0 0.330 129.5 30.7-148.0 -64.6 1.8 -0.5 10.1 32 32 A C S S- 0 0 47 2,-0.1 -2,-0.1 21,-0.0 20,-0.0 0.748 90.3-139.8 -78.2 -24.9 5.3 -1.4 9.1 33 33 A E + 0 0 159 1,-0.2 2,-0.3 0, 0.0 -3,-0.1 0.974 45.5 151.3 63.0 57.2 6.7 1.5 11.1 34 34 A K - 0 0 119 0, 0.0 -5,-1.3 0, 0.0 2,-0.3 -0.911 52.9-100.2-121.7 148.7 9.4 2.5 8.6 35 35 A E B -A 28 0A 142 -2,-0.3 -7,-0.2 -7,-0.2 2,-0.1 -0.493 42.1-120.7 -68.4 124.3 11.0 5.9 7.9 36 36 A F - 0 0 34 -9,-1.0 2,-0.3 -2,-0.3 5,-0.1 -0.399 35.8-174.0 -67.2 139.1 9.4 7.5 4.8 37 37 A S - 0 0 65 3,-0.8 -1,-0.0 -2,-0.1 0, 0.0 -0.830 40.0-100.5-130.7 168.9 11.8 8.2 1.9 38 38 A I S S+ 0 0 156 -2,-0.3 3,-0.2 1,-0.2 -1,-0.1 0.925 125.9 40.7 -53.8 -49.1 11.7 10.0 -1.5 39 39 A S S S+ 0 0 117 1,-0.2 2,-1.4 2,-0.1 -1,-0.2 0.856 110.3 62.1 -68.8 -35.9 11.4 6.6 -3.3 40 40 A R S S- 0 0 60 -5,-0.1 -3,-0.8 13,-0.1 -1,-0.2 -0.565 80.2-180.0 -92.5 71.7 9.0 5.3 -0.7 41 41 A R - 0 0 186 -2,-1.4 13,-0.7 -3,-0.2 2,-0.2 0.040 26.6-102.1 -62.0 177.7 6.2 7.8 -1.2 42 42 A K E -B 53 0B 101 11,-0.2 2,-0.4 12,-0.1 11,-0.2 -0.680 22.9-150.2-104.9 160.2 2.9 7.7 0.8 43 43 A H E -B 52 0B 61 9,-2.3 2,-0.9 -2,-0.2 9,-0.7 -0.964 7.7-145.5-135.7 117.8 -0.5 6.4 -0.2 44 44 A H E -B 51 0B 121 -2,-0.4 7,-0.2 7,-0.2 27,-0.1 -0.714 25.9-133.7 -84.9 105.8 -3.8 7.8 1.1 45 45 A C - 0 0 12 5,-1.6 27,-0.2 -2,-0.9 -1,-0.0 -0.044 3.0-144.9 -52.8 159.3 -6.2 4.9 1.4 46 46 A R S S+ 0 0 112 25,-0.3 -1,-0.1 3,-0.1 26,-0.1 0.692 93.0 38.2-100.0 -26.1 -9.7 5.3 0.1 47 47 A N S S+ 0 0 70 3,-0.1 25,-0.0 1,-0.0 -2,-0.0 0.935 133.1 17.8 -87.2 -74.4 -11.5 3.2 2.7 48 48 A C S S- 0 0 50 25,-0.1 -2,-0.1 2,-0.0 24,-0.0 0.775 93.8-143.4 -70.3 -26.6 -9.8 3.8 6.1 49 49 A G + 0 0 40 1,-0.2 2,-0.2 -5,-0.0 -3,-0.1 0.979 47.4 137.3 60.8 59.6 -8.3 7.0 4.7 50 50 A H - 0 0 80 -7,-0.1 -5,-1.6 0, 0.0 2,-0.5 -0.744 57.7 -91.1-127.8 175.8 -4.9 6.7 6.5 51 51 A I E +B 44 0B 36 -2,-0.2 -21,-0.8 -7,-0.2 2,-0.3 -0.779 52.0 153.6 -94.3 130.5 -1.2 7.2 5.7 52 52 A F E -B 43 0B 11 -9,-0.7 -9,-2.3 -2,-0.5 2,-0.2 -0.933 35.3-113.2-147.5 169.0 0.8 4.2 4.5 53 53 A C E > -B 42 0B 0 -2,-0.3 3,-1.1 -11,-0.2 -11,-0.2 -0.503 40.4 -95.7-101.5 172.4 3.9 3.3 2.4 54 54 A N G > S+ 0 0 79 -13,-0.7 3,-1.4 1,-0.3 -12,-0.1 0.870 127.0 54.8 -53.7 -39.3 4.2 1.5 -0.9 55 55 A T G 3 S+ 0 0 99 1,-0.3 3,-0.4 2,-0.2 -1,-0.3 0.790 111.9 44.2 -65.9 -27.9 4.8 -1.7 1.0 56 56 A C G < S+ 0 0 3 -3,-1.1 18,-0.3 1,-0.2 -1,-0.3 -0.100 115.7 48.1-107.6 33.3 1.6 -1.1 2.9 57 57 A S < + 0 0 2 -3,-1.4 -1,-0.2 16,-0.2 -2,-0.2 0.060 68.2 114.3-159.1 29.7 -0.4 -0.2 -0.2 58 58 A S + 0 0 65 -3,-0.4 2,-0.3 -5,-0.1 15,-0.1 -0.229 62.7 83.4-100.7 42.8 0.4 -2.8 -2.8 59 59 A N E -C 72 0C 46 13,-0.9 13,-2.9 -2,-0.1 2,-0.3 -0.999 56.1-160.8-146.6 144.4 -3.1 -4.2 -3.0 60 60 A E E +C 71 0C 98 -2,-0.3 2,-0.3 11,-0.2 11,-0.2 -0.939 9.2 177.8-127.3 149.1 -6.4 -3.2 -4.8 61 61 A L E -C 70 0C 42 9,-1.3 9,-1.1 -2,-0.3 2,-1.0 -0.994 33.7-115.4-151.2 143.0 -10.0 -4.1 -4.1 62 62 A A - 0 0 71 -2,-0.3 6,-0.0 7,-0.3 -2,-0.0 -0.684 39.1-167.9 -82.4 103.4 -13.4 -3.2 -5.7 63 63 A L - 0 0 24 -2,-1.0 -16,-0.0 5,-0.3 -2,-0.0 -0.518 32.0-119.7 -90.3 159.1 -15.3 -1.3 -3.1 64 64 A P S S+ 0 0 130 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.661 111.1 60.3 -69.7 -16.4 -19.0 -0.4 -3.2 65 65 A S S S+ 0 0 94 3,-0.0 -3,-0.0 1,-0.0 3,-0.0 0.939 106.8 42.0 -76.9 -50.4 -18.1 3.3 -3.1 66 66 A Y S S- 0 0 101 1,-0.1 4,-0.1 2,-0.1 -1,-0.0 -0.673 76.0-132.7 -99.8 154.1 -16.1 3.4 -6.3 67 67 A P S S+ 0 0 129 0, 0.0 -1,-0.1 0, 0.0 -5,-0.0 0.888 91.6 37.4 -69.7 -41.2 -16.9 1.7 -9.6 68 68 A K S S- 0 0 144 -6,-0.0 -5,-0.3 -7,-0.0 2,-0.3 -0.781 98.5 -91.3-113.5 157.8 -13.4 0.2 -10.1 69 69 A P - 0 0 64 0, 0.0 -7,-0.3 0, 0.0 2,-0.1 -0.509 46.6-167.1 -69.8 122.9 -10.9 -1.3 -7.6 70 70 A V E -C 61 0C 27 -9,-1.1 -9,-1.3 -2,-0.3 2,-0.6 -0.397 34.7 -73.5-101.9-178.8 -8.5 1.4 -6.2 71 71 A R E +C 60 0C 82 -11,-0.2 -25,-0.3 -2,-0.1 -11,-0.2 -0.679 59.4 171.9 -81.5 115.8 -5.3 1.1 -4.3 72 72 A V E -C 59 0C 2 -13,-2.9 -13,-0.9 -2,-0.6 2,-0.2 -0.570 30.6 -98.9-115.1 179.9 -6.0 0.2 -0.6 73 73 A C >> - 0 0 1 -2,-0.2 4,-3.2 -16,-0.1 3,-1.8 -0.662 29.8-113.1-101.0 157.5 -3.9 -0.8 2.4 74 74 A D H 3>>S+ 0 0 62 -18,-0.3 4,-1.4 1,-0.3 5,-0.5 0.775 117.5 64.1 -57.0 -26.3 -3.2 -4.3 3.7 75 75 A S H 345S+ 0 0 72 -19,-0.2 -1,-0.3 1,-0.2 4,-0.3 0.778 114.3 30.6 -68.9 -26.7 -5.3 -3.3 6.7 76 76 A C H <>5S+ 0 0 4 -3,-1.8 4,-3.2 3,-0.2 5,-0.3 0.811 117.4 55.4 -98.3 -41.4 -8.3 -3.0 4.5 77 77 A H H X5S+ 0 0 39 -4,-3.2 4,-1.9 2,-0.2 -3,-0.2 0.982 115.1 36.7 -55.6 -64.9 -7.5 -5.6 1.8 78 78 A T H X5S+ 0 0 67 -4,-1.4 4,-2.1 2,-0.2 -1,-0.2 0.911 118.9 52.4 -55.5 -45.7 -7.0 -8.5 4.2 79 79 A L H >4< S+ 0 0 48 -4,-3.2 3,-0.9 1,-0.3 -1,-0.2 0.809 113.7 54.1 -53.4 -30.8 -12.4 -7.0 3.6 81 81 A L H 3< S+ 0 0 109 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 0.835 113.4 40.6 -73.4 -33.5 -11.2 -10.4 2.4 82 82 A Q T << S+ 0 0 139 -4,-2.1 -1,-0.2 -3,-0.9 2,-0.2 -0.191 105.6 89.1-107.5 39.3 -11.8 -11.9 5.9 83 83 A R S < S- 0 0 154 -3,-0.9 2,-0.4 -5,-0.1 -3,-0.1 -0.578 73.0-119.9-122.8-174.0 -15.1 -10.1 6.5 84 84 A C + 0 0 126 -2,-0.2 2,-0.8 2,-0.0 -3,-0.1 -0.807 27.4 174.5-136.9 94.2 -18.8 -10.7 5.8 85 85 A S + 0 0 104 -2,-0.4 2,-0.8 -5,-0.2 -2,-0.0 -0.834 1.9 172.5-104.5 98.8 -20.6 -8.0 3.7 86 86 A S S S- 0 0 107 -2,-0.8 -1,-0.0 1,-0.1 -2,-0.0 -0.609 78.7 -53.3-105.4 71.1 -24.1 -9.1 3.0 87 87 A T S S+ 0 0 139 -2,-0.8 2,-0.9 1,-0.2 -1,-0.1 0.906 80.4 176.4 63.9 43.2 -25.6 -6.0 1.3 88 88 A A 0 0 83 1,-0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.716 360.0 360.0 -85.2 106.0 -24.5 -3.8 4.2 89 89 A S 0 0 169 -2,-0.9 -1,-0.0 -25,-0.0 0, 0.0 -0.590 360.0 360.0-167.0 360.0 -25.3 -0.2 3.2