==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 02-APR-07 2YRD . COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC23A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 59 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4973.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 40.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 16.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 50 A G > 0 0 114 0, 0.0 3,-1.6 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 42.5 18.2 -6.2 -10.8 2 51 A S T 3 - 0 0 124 1,-0.3 3,-0.1 2,-0.0 0, 0.0 -0.387 360.0 -8.7 -61.1 124.8 20.2 -9.3 -11.4 3 52 A S T 3 S+ 0 0 133 -2,-0.2 -1,-0.3 1,-0.2 2,-0.1 0.887 119.5 107.6 52.9 42.2 20.6 -11.2 -8.1 4 53 A G S < S- 0 0 43 -3,-1.6 2,-0.4 1,-0.1 -1,-0.2 -0.358 76.4 -24.2-125.8-154.0 19.1 -8.3 -6.2 5 54 A S - 0 0 104 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 -0.463 48.1-166.2 -64.9 116.9 15.9 -7.2 -4.4 6 55 A S - 0 0 125 -2,-0.4 -1,-0.2 -3,-0.1 -2,-0.0 0.914 24.4-158.7 -70.6 -44.3 13.1 -9.3 -5.8 7 56 A G - 0 0 51 45,-0.1 42,-0.1 1,-0.1 0, 0.0 0.451 5.0-126.5 73.3 141.9 10.3 -7.2 -4.3 8 57 A E - 0 0 141 1,-0.0 44,-0.1 0, 0.0 -1,-0.1 -0.941 19.9-108.6-126.4 147.3 6.8 -8.2 -3.6 9 58 A P - 0 0 99 0, 0.0 2,-0.7 0, 0.0 43,-0.0 -0.298 25.6-128.1 -69.8 154.2 3.4 -6.7 -4.7 10 59 A V - 0 0 34 11,-0.1 11,-0.6 36,-0.0 2,-0.4 -0.876 26.5-173.1-110.3 102.5 1.1 -5.0 -2.1 11 60 A L B -A 20 0A 64 -2,-0.7 9,-0.2 9,-0.2 7,-0.1 -0.778 37.0 -91.4 -97.2 136.7 -2.4 -6.4 -2.2 12 61 A C - 0 0 0 7,-1.3 -1,-0.1 -2,-0.4 6,-0.1 0.052 34.9-118.9 -39.4 149.9 -5.2 -4.7 -0.2 13 62 A S S S+ 0 0 87 28,-0.1 -1,-0.1 -3,-0.1 -2,-0.1 0.968 91.2 85.1 -59.9 -56.5 -5.6 -6.2 3.3 14 63 A R S > S- 0 0 139 1,-0.1 4,-2.1 2,-0.1 5,-0.1 -0.146 73.9-143.2 -49.0 138.3 -9.2 -7.3 2.8 15 64 A T T 4 S+ 0 0 116 2,-0.2 -1,-0.1 1,-0.2 -3,-0.0 0.948 99.3 48.6 -71.0 -50.7 -9.4 -10.7 1.2 16 65 A T T 4 S+ 0 0 107 1,-0.1 -1,-0.2 2,-0.0 -2,-0.1 0.873 121.7 37.6 -57.5 -38.9 -12.4 -10.0 -1.0 17 66 A C T 4 + 0 0 31 2,-0.1 -2,-0.2 1,-0.1 3,-0.2 0.985 65.6 156.4 -76.2 -68.6 -10.8 -6.8 -2.2 18 67 A R < + 0 0 134 -4,-2.1 2,-0.5 1,-0.2 -3,-0.1 0.839 27.1 175.1 41.7 40.0 -7.1 -7.7 -2.5 19 68 A A - 0 0 17 -8,-0.1 -7,-1.3 -5,-0.1 -1,-0.2 -0.652 29.3-120.7 -80.6 123.9 -6.9 -4.8 -4.9 20 69 A A B -A 11 0A 54 -2,-0.5 2,-0.6 -9,-0.2 -9,-0.2 -0.058 43.8 -76.6 -56.7 162.9 -3.3 -4.1 -6.1 21 70 A L + 0 0 28 -11,-0.6 -1,-0.2 2,-0.1 -11,-0.1 -0.518 64.6 172.2 -68.1 111.1 -1.8 -0.7 -5.5 22 71 A N > - 0 0 33 -2,-0.6 3,-0.9 -3,-0.1 -3,-0.0 -0.863 47.0-118.0-122.4 156.7 -3.3 1.6 -8.1 23 72 A P T 3 S+ 0 0 124 0, 0.0 4,-0.1 0, 0.0 -2,-0.1 0.455 108.2 72.0 -69.8 0.9 -3.1 5.4 -8.6 24 73 A L T 3 S+ 0 0 122 2,-0.1 -3,-0.1 0, 0.0 2,-0.0 0.858 81.1 80.2 -83.8 -39.4 -6.9 5.4 -8.1 25 74 A C S < S- 0 0 8 -3,-0.9 2,-1.1 1,-0.1 11,-0.2 -0.299 94.6-103.2 -68.0 153.1 -6.7 4.8 -4.3 26 75 A Q E -B 35 0B 141 9,-1.6 9,-2.6 2,-0.1 2,-0.9 -0.676 36.9-164.3 -82.6 99.9 -6.0 7.7 -1.9 27 76 A V E -B 34 0B 41 -2,-1.1 2,-1.7 7,-0.3 7,-0.3 -0.759 5.9-160.6 -89.7 106.5 -2.3 7.2 -0.9 28 77 A D E > +B 33 0B 73 5,-1.9 5,-2.4 -2,-0.9 3,-0.2 -0.550 18.8 169.6 -86.5 74.2 -1.6 9.3 2.2 29 78 A Y T > 5S+ 0 0 111 -2,-1.7 3,-0.7 1,-0.2 -1,-0.2 0.799 78.7 54.6 -54.6 -29.4 2.2 9.4 1.8 30 79 A R T 3 5S+ 0 0 231 1,-0.2 -1,-0.2 -3,-0.2 -2,-0.1 0.920 114.2 37.1 -71.4 -45.6 2.1 12.0 4.6 31 80 A A T 3 5S- 0 0 44 -3,-0.2 -1,-0.2 2,-0.2 -2,-0.2 -0.010 110.2-119.2 -96.0 28.7 0.2 9.9 7.0 32 81 A K T < 5S+ 0 0 96 -3,-0.7 13,-1.1 1,-0.1 2,-0.3 0.833 81.1 106.5 34.7 46.4 2.0 6.7 5.9 33 82 A L E < -BC 28 44B 55 -5,-2.4 -5,-1.9 11,-0.2 2,-0.3 -0.903 54.5-156.6-143.5 170.8 -1.4 5.4 4.9 34 83 A W E -BC 27 43B 11 9,-0.9 9,-1.1 -7,-0.3 2,-0.3 -0.822 11.3-147.7-157.7 112.4 -3.5 4.7 1.8 35 84 A A E -BC 26 42B 25 -9,-2.6 -9,-1.6 -2,-0.3 7,-0.2 -0.617 24.4-120.8 -83.2 137.9 -7.3 4.5 1.6 36 85 A C - 0 0 2 5,-1.0 -1,-0.1 -2,-0.3 -15,-0.0 -0.412 4.9-146.0 -76.1 152.3 -8.9 2.0 -0.9 37 86 A N S S+ 0 0 46 -2,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.604 96.2 31.1 -91.9 -14.9 -11.2 3.3 -3.7 38 87 A F S S+ 0 0 133 3,-0.1 -2,-0.0 -19,-0.0 -21,-0.0 0.808 133.1 22.5-103.9 -75.0 -13.3 0.1 -3.6 39 88 A C S S- 0 0 40 2,-0.1 -2,-0.1 -25,-0.1 -23,-0.0 0.713 91.9-142.8 -68.4 -20.1 -13.4 -1.4 -0.1 40 89 A Y + 0 0 166 1,-0.2 2,-0.4 -5,-0.0 -3,-0.1 0.933 44.2 153.0 55.9 49.7 -12.5 2.0 1.3 41 90 A Q - 0 0 95 -7,-0.1 -5,-1.0 -27,-0.0 2,-0.6 -0.926 45.6-127.4-115.0 135.5 -10.4 0.4 4.0 42 91 A R E -C 35 0B 192 -2,-0.4 2,-0.4 -7,-0.2 -7,-0.2 -0.698 31.1-175.8 -83.3 117.9 -7.4 2.2 5.7 43 92 A N E -C 34 0B 14 -9,-1.1 -9,-0.9 -2,-0.6 2,-0.1 -0.925 21.0-125.1-117.7 140.5 -4.3 -0.0 5.5 44 93 A Q E -C 33 0B 171 -2,-0.4 -11,-0.2 -11,-0.2 -12,-0.1 -0.469 32.9-101.7 -80.8 152.7 -0.9 0.7 7.1 45 94 A F - 0 0 32 -13,-1.1 -1,-0.1 -2,-0.1 4,-0.0 -0.429 40.3-105.9 -74.5 147.0 2.3 0.7 5.0 46 95 A P > - 0 0 34 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 -0.241 19.5-120.9 -69.8 159.0 4.6 -2.3 5.2 47 96 A P T 3 S+ 0 0 131 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 0.814 111.4 46.6 -69.8 -31.6 8.0 -2.3 7.1 48 97 A S T 3 + 0 0 95 1,-0.1 2,-0.9 2,-0.1 4,-0.4 -0.467 66.1 147.8-110.3 58.8 9.9 -3.1 3.9 49 98 A Y < + 0 0 116 -3,-0.7 -1,-0.1 -2,-0.4 -4,-0.0 -0.222 51.3 85.9 -86.7 45.8 8.3 -0.6 1.5 50 99 A A S S+ 0 0 68 -2,-0.9 6,-0.3 5,-0.1 -1,-0.2 0.799 76.9 53.6-107.9 -57.6 11.6 -0.2 -0.4 51 100 A G S S+ 0 0 32 -3,-0.4 -2,-0.1 4,-0.1 5,-0.0 0.884 80.4 107.1 -46.7 -46.2 11.7 -3.0 -3.0 52 101 A I > - 0 0 19 -4,-0.4 4,-1.9 1,-0.2 -45,-0.1 -0.107 56.5-163.6 -40.2 109.4 8.4 -1.9 -4.3 53 102 A S H > S+ 0 0 96 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.913 85.3 58.4 -66.2 -44.0 9.3 -0.3 -7.6 54 103 A E H 4 S+ 0 0 115 1,-0.2 3,-0.3 2,-0.2 -1,-0.2 0.929 107.8 46.4 -51.2 -51.6 5.9 1.5 -7.9 55 104 A L H 4 S+ 0 0 13 1,-0.2 -1,-0.2 3,-0.1 -2,-0.2 0.960 102.3 63.4 -56.8 -55.5 6.4 3.2 -4.6 56 105 A N H < S+ 0 0 112 -4,-1.9 -1,-0.2 -6,-0.3 -2,-0.2 0.855 110.8 40.6 -35.7 -50.7 10.0 4.3 -5.4 57 106 A Q S < S- 0 0 167 -4,-1.7 2,-0.3 -3,-0.3 -1,-0.3 -0.735 86.0-163.4-107.1 83.6 8.6 6.4 -8.3 58 107 A P 0 0 77 0, 0.0 -3,-0.1 0, 0.0 -2,-0.0 -0.505 360.0 360.0 -69.7 124.3 5.4 8.0 -6.9 59 108 A A 0 0 147 -2,-0.3 -4,-0.0 -5,-0.1 -5,-0.0 0.926 360.0 360.0 -89.1 360.0 3.1 9.3 -9.6