==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 03-APR-07 2YRT . COMPND 2 MOLECULE: CHORD CONTAINING PROTEIN-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.NAMEKI,K.SAITO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5455.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 17.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 115 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -30.2 -15.0 19.0 12.4 2 2 A S + 0 0 131 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.289 360.0 138.6 -52.9 116.9 -14.9 15.7 10.5 3 3 A S + 0 0 118 -2,-0.1 2,-0.0 1,-0.0 0, 0.0 -0.916 14.3 148.7-165.6 136.0 -12.1 16.1 7.9 4 4 A G + 0 0 75 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.342 21.2 136.5-173.0 82.4 -9.4 13.9 6.5 5 5 A S + 0 0 133 -2,-0.0 2,-0.2 2,-0.0 0, 0.0 -0.999 20.1 179.1-138.1 134.8 -8.1 14.3 2.9 6 6 A S - 0 0 95 -2,-0.4 -2,-0.0 3,-0.0 0, 0.0 -0.684 18.5-173.6-124.3 178.3 -4.6 14.3 1.5 7 7 A G S S+ 0 0 78 -2,-0.2 -1,-0.0 3,-0.0 -2,-0.0 0.117 70.5 75.0-164.6 31.2 -2.9 14.6 -1.9 8 8 A M + 0 0 76 2,-0.1 2,-1.1 15,-0.0 16,-0.2 0.249 56.8 120.8-130.1 6.8 0.8 14.0 -1.4 9 9 A A - 0 0 36 13,-0.2 2,-0.3 14,-0.1 13,-0.2 -0.644 49.6-158.5 -79.5 99.5 0.9 10.3 -1.0 10 10 A L E -A 21 0A 62 11,-1.9 11,-1.0 -2,-1.1 2,-0.5 -0.583 18.2-117.8 -81.0 139.3 3.1 9.0 -3.8 11 11 A L E -A 20 0A 55 -2,-0.3 9,-0.3 9,-0.2 2,-0.1 -0.642 27.9-128.4 -79.9 124.7 2.7 5.3 -4.8 12 12 A C - 0 0 1 7,-2.9 61,-0.2 -2,-0.5 59,-0.1 -0.438 17.1-166.8 -72.7 144.2 5.9 3.3 -4.3 13 13 A Y + 0 0 99 59,-1.8 2,-0.5 61,-0.2 -1,-0.1 -0.171 45.8 120.5-123.8 38.4 7.2 1.3 -7.3 14 14 A N S >> S- 0 0 10 5,-0.2 3,-3.0 58,-0.1 4,-1.1 -0.909 72.8-104.7-109.3 127.8 9.7 -0.9 -5.5 15 15 A R T 34 S+ 0 0 139 -2,-0.5 19,-3.1 1,-0.3 21,-0.1 -0.225 110.0 22.4 -49.1 121.5 9.4 -4.7 -5.5 16 16 A G T 34 S+ 0 0 43 17,-0.2 49,-0.3 49,-0.1 -1,-0.3 0.084 124.6 53.9 106.2 -22.8 8.1 -5.7 -2.1 17 17 A C T <4 + 0 0 27 -3,-3.0 -2,-0.2 47,-0.1 3,-0.1 0.808 48.2 156.4-105.1 -71.0 6.6 -2.4 -1.2 18 18 A G < + 0 0 47 -4,-1.1 2,-0.2 1,-0.2 -5,-0.1 0.692 48.2 124.0 48.5 17.7 4.2 -1.2 -3.9 19 19 A Q - 0 0 139 -5,-0.2 -7,-2.9 1,-0.1 -1,-0.2 -0.587 66.0 -98.3-104.1 167.9 2.6 0.8 -1.1 20 20 A R E +A 11 0A 153 -9,-0.3 2,-0.3 -2,-0.2 -9,-0.2 -0.186 41.5 173.0 -77.3 174.0 1.9 4.5 -0.8 21 21 A F E -A 10 0A 10 -11,-1.0 -11,-1.9 50,-0.0 10,-0.0 -0.974 32.0-102.6-172.7 165.5 4.1 7.0 1.0 22 22 A D >> - 0 0 68 -2,-0.3 4,-2.1 -13,-0.2 3,-0.5 -0.890 14.5-159.9-107.3 128.9 4.7 10.7 1.8 23 23 A P T 34 S+ 0 0 58 0, 0.0 -1,-0.1 0, 0.0 -14,-0.1 0.904 94.2 56.7 -69.8 -43.7 7.5 12.7 -0.0 24 24 A E T 34 S+ 0 0 147 1,-0.2 -2,-0.0 -16,-0.2 -16,-0.0 0.586 124.0 28.2 -65.4 -8.2 7.7 15.4 2.6 25 25 A T T <4 S+ 0 0 72 -3,-0.5 -1,-0.2 2,-0.0 0, 0.0 0.527 91.0 122.7-124.6 -20.2 8.4 12.6 5.1 26 26 A N < + 0 0 29 -4,-2.1 2,-0.3 2,-0.1 44,-0.1 -0.101 38.7 178.7 -47.0 141.7 10.0 10.0 2.8 27 27 A S >> - 0 0 47 42,-0.4 3,-1.9 1,-0.0 4,-0.6 -0.953 47.5-102.7-145.9 163.3 13.5 9.0 4.0 28 28 A D T 34 S+ 0 0 90 1,-0.3 42,-0.2 -2,-0.3 -2,-0.1 0.582 126.8 41.8 -63.1 -7.6 16.3 6.7 3.1 29 29 A D T 34 S+ 0 0 96 39,-0.2 -1,-0.3 1,-0.1 41,-0.1 -0.141 97.2 76.0-131.5 37.3 15.0 4.6 6.0 30 30 A A T <4 S+ 0 0 40 -3,-1.9 2,-0.5 39,-1.4 40,-0.2 0.509 83.9 66.5-120.9 -16.2 11.2 4.8 5.4 31 31 A C B < -B 69 0B 0 38,-2.1 38,-1.7 -4,-0.6 2,-0.6 -0.938 59.3-166.2-114.7 129.5 10.9 2.5 2.4 32 32 A T + 0 0 37 -2,-0.5 33,-0.9 36,-0.2 2,-0.2 -0.878 29.9 139.3-117.7 99.8 11.5 -1.3 2.7 33 33 A Y - 0 0 49 -2,-0.6 34,-1.9 34,-0.5 33,-0.6 -0.644 53.3-100.4-126.8-175.8 11.8 -3.0 -0.7 34 34 A H - 0 0 1 -19,-3.1 -19,-0.2 31,-0.2 14,-0.1 -0.904 19.1-168.9-116.8 105.2 13.8 -5.7 -2.4 35 35 A P S S+ 0 0 72 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 0.425 73.9 68.3 -69.7 3.2 16.6 -4.4 -4.7 36 36 A G S S- 0 0 14 -21,-0.1 -21,-0.1 1,-0.1 -2,-0.1 0.068 88.3 -93.4-100.7-147.8 17.0 -7.9 -6.0 37 37 A V - 0 0 80 -2,-0.0 11,-1.4 -22,-0.0 2,-0.4 -0.955 36.0 -92.9-136.8 155.1 14.8 -10.2 -8.1 38 38 A P E -C 47 0C 53 0, 0.0 2,-0.3 0, 0.0 9,-0.3 -0.513 45.9-174.2 -69.8 121.8 12.1 -12.9 -7.4 39 39 A V E -C 46 0C 39 7,-2.8 7,-2.8 -2,-0.4 2,-0.4 -0.870 17.0-161.2-119.2 152.7 13.7 -16.4 -7.3 40 40 A F E +C 45 0C 140 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.822 22.2 158.8-136.8 95.8 12.1 -19.9 -7.0 41 41 A H E > S-C 44 0C 55 3,-1.9 3,-2.2 -2,-0.4 -2,-0.1 -0.972 71.8 -8.8-122.4 130.4 14.3 -22.7 -5.9 42 42 A D T 3 S- 0 0 140 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.879 128.6 -57.3 54.6 40.5 13.1 -26.0 -4.4 43 43 A A T 3 S+ 0 0 74 1,-0.2 2,-0.9 -3,-0.1 -1,-0.3 0.584 112.5 128.4 68.0 8.5 9.6 -24.6 -4.2 44 44 A L E < -C 41 0C 53 -3,-2.2 -3,-1.9 9,-0.0 2,-0.5 -0.820 45.7-160.9-101.4 99.1 11.2 -21.8 -2.1 45 45 A K E +CD 40 54C 42 9,-1.8 9,-1.6 -2,-0.9 -5,-0.2 -0.681 36.3 118.8 -82.2 121.1 10.1 -18.4 -3.6 46 46 A G E -CD 39 53C 0 -7,-2.8 -7,-2.8 -2,-0.5 2,-0.3 -0.592 54.7 -84.4-150.5-147.7 12.4 -15.6 -2.4 47 47 A W E -C 38 0C 18 5,-0.8 3,-0.4 3,-0.3 5,-0.0 -0.990 18.5-130.6-141.7 148.7 14.9 -12.9 -3.6 48 48 A S S S+ 0 0 102 -11,-1.4 3,-0.1 -2,-0.3 -1,-0.0 0.299 104.4 67.3 -79.2 11.2 18.6 -12.8 -4.4 49 49 A C S S+ 0 0 43 -12,-0.2 -1,-0.2 3,-0.1 2,-0.2 0.835 107.9 19.1 -96.5 -44.0 18.8 -9.8 -2.2 50 50 A C S S- 0 0 25 -3,-0.4 -3,-0.3 2,-0.2 -1,-0.1 -0.632 74.2-115.7-120.0 178.9 18.1 -11.3 1.2 51 51 A K S S+ 0 0 196 -2,-0.2 -3,-0.0 -5,-0.1 -1,-0.0 0.530 72.9 123.9 -92.2 -8.7 18.2 -14.8 2.8 52 52 A R + 0 0 156 -6,-0.0 -5,-0.8 1,-0.0 2,-0.3 -0.231 35.7 174.1 -54.6 138.0 14.4 -14.8 3.4 53 53 A R E +D 46 0C 81 -7,-0.2 2,-0.3 0, 0.0 -7,-0.2 -0.951 8.0 175.6-153.7 129.3 12.7 -17.8 1.8 54 54 A T E -D 45 0C 22 -9,-1.6 -9,-1.8 -2,-0.3 -2,-0.0 -0.947 26.4-155.0-134.2 154.8 9.1 -19.0 1.9 55 55 A T S S+ 0 0 89 -2,-0.3 2,-1.0 -11,-0.2 -1,-0.1 0.581 74.0 92.9-101.5 -15.2 7.1 -21.8 0.2 56 56 A D S >> S- 0 0 86 1,-0.2 4,-2.1 -11,-0.1 3,-1.0 -0.713 71.4-146.2 -85.2 103.6 3.7 -20.1 0.6 57 57 A F H 3> S+ 0 0 133 -2,-1.0 4,-1.1 1,-0.3 -1,-0.2 0.760 102.6 55.2 -36.9 -29.5 3.1 -18.1 -2.6 58 58 A S H 34 S+ 0 0 76 2,-0.2 4,-0.4 1,-0.2 3,-0.4 0.945 105.1 47.8 -72.6 -50.4 1.4 -15.7 -0.2 59 59 A D H X> S+ 0 0 81 -3,-1.0 4,-2.8 1,-0.2 3,-1.7 0.885 104.5 62.7 -57.8 -40.8 4.3 -15.2 2.2 60 60 A F H 3< S+ 0 0 20 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.912 105.8 44.1 -51.2 -47.8 6.6 -14.6 -0.8 61 61 A L T 3< S+ 0 0 101 -4,-1.1 -1,-0.3 -3,-0.4 -2,-0.2 0.527 116.2 51.0 -75.8 -5.2 4.6 -11.6 -1.8 62 62 A S T <4 S+ 0 0 85 -3,-1.7 -2,-0.2 -4,-0.4 -1,-0.2 0.732 72.5 125.4-100.5 -31.2 4.6 -10.6 1.9 63 63 A I < - 0 0 15 -4,-2.8 3,-0.1 -5,-0.1 -3,-0.0 -0.015 66.9-123.9 -34.3 105.9 8.4 -11.0 2.5 64 64 A V - 0 0 107 1,-0.1 -31,-0.1 2,-0.1 -1,-0.1 -0.306 35.5 -88.8 -59.8 137.6 9.1 -7.5 4.0 65 65 A G - 0 0 7 -33,-0.9 -31,-0.2 -49,-0.3 -1,-0.1 -0.071 27.8-153.1 -47.0 145.1 11.8 -5.7 2.1 66 66 A C S S+ 0 0 59 -33,-0.6 2,-0.2 -3,-0.1 -32,-0.2 0.540 74.7 65.0 -98.3 -10.9 15.4 -6.3 3.3 67 67 A T S S- 0 0 46 -34,-1.9 -34,-0.5 -17,-0.0 2,-0.4 -0.689 71.0-140.1-110.4 164.5 16.7 -2.9 2.1 68 68 A K + 0 0 115 -2,-0.2 2,-0.3 -36,-0.2 -36,-0.2 -0.968 41.1 103.7-127.5 142.2 15.9 0.6 3.2 69 69 A G B -B 31 0B 8 -38,-1.7 -38,-2.1 -2,-0.4 -39,-1.4 -0.913 66.9 -41.0-178.3-155.2 15.5 3.8 1.1 70 70 A R - 0 0 152 -2,-0.3 -42,-0.1 -40,-0.2 3,-0.1 -0.886 63.6-103.6-104.6 123.1 13.1 6.3 -0.4 71 71 A H - 0 0 26 -2,-0.5 2,-0.8 -44,-0.2 -1,-0.1 -0.042 35.6-121.5 -40.8 136.2 9.9 5.0 -1.9 72 72 A N - 0 0 69 1,-0.1 -59,-1.8 2,-0.0 -1,-0.1 -0.774 23.4-171.8 -90.8 108.8 10.1 5.0 -5.7 73 73 A S S S+ 0 0 54 -2,-0.8 2,-0.3 -61,-0.2 -62,-0.2 0.333 72.1 63.6 -79.7 8.7 7.3 7.1 -7.1 74 74 A E 0 0 145 1,-0.0 -61,-0.2 0, 0.0 -2,-0.0 -0.988 360.0 360.0-136.2 144.5 8.3 5.9 -10.6 75 75 A K 0 0 200 -2,-0.3 -2,-0.1 -63,-0.1 -63,-0.0 0.292 360.0 360.0 -66.9 360.0 8.3 2.4 -12.2