==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 03-APR-07 2YSA . COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,M.SATO,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE, . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5809.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 25.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 2,-0.4 0, 0.0 10,-0.0 0.000 360.0 360.0 360.0 142.3 -10.9 -8.8 5.3 2 2 A S - 0 0 114 2,-0.0 2,-0.5 4,-0.0 4,-0.2 -0.809 360.0-151.9-104.7 143.6 -9.4 -5.5 6.5 3 3 A S + 0 0 123 -2,-0.4 2,-0.1 2,-0.1 4,-0.1 -0.945 68.7 33.9-118.6 114.5 -11.2 -2.2 6.7 4 4 A G S S+ 0 0 63 2,-1.0 -1,-0.0 -2,-0.5 4,-0.0 -0.564 94.6 65.2 151.9 -82.4 -9.2 1.0 6.3 5 5 A S S S+ 0 0 136 -2,-0.1 2,-0.3 1,-0.1 -2,-0.1 0.881 119.3 13.8 -37.4 -56.0 -6.3 1.0 3.9 6 6 A S S S- 0 0 72 -4,-0.2 -2,-1.0 1,-0.1 3,-0.1 -0.940 74.8-124.4-127.5 149.1 -8.7 0.5 1.0 7 7 A G S S- 0 0 84 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.945 83.0 -35.6 -53.4 -54.7 -12.5 0.7 0.7 8 8 A Y - 0 0 135 -5,-0.1 2,-0.3 -3,-0.1 9,-0.3 -0.979 53.3-151.6-163.8 167.8 -12.9 -2.8 -0.6 9 9 A T - 0 0 59 -2,-0.3 2,-0.2 7,-0.1 11,-0.2 -0.994 42.5 -77.7-149.7 152.3 -11.4 -5.6 -2.7 10 10 A C > - 0 0 2 5,-1.2 4,-1.0 8,-0.6 5,-0.2 -0.297 34.4-161.0 -52.7 112.3 -12.5 -8.5 -4.8 11 11 A F T 4 S+ 0 0 176 -2,-0.2 -1,-0.2 1,-0.2 8,-0.1 0.478 83.5 66.6 -75.7 -1.3 -13.3 -11.2 -2.2 12 12 A R T 4 S- 0 0 122 3,-0.1 22,-0.2 22,-0.0 -1,-0.2 0.966 126.8 -4.8 -81.8 -68.0 -13.0 -13.7 -5.1 13 13 A C T 4 S- 0 0 14 2,-0.2 -2,-0.1 20,-0.1 21,-0.1 0.714 98.4-112.5 -99.0 -28.2 -9.3 -13.6 -6.1 14 14 A G < + 0 0 39 -4,-1.0 -3,-0.1 1,-0.3 19,-0.0 0.813 68.8 132.8 97.8 38.7 -8.3 -10.8 -3.8 15 15 A K > - 0 0 117 -5,-0.2 -5,-1.2 3,-0.1 3,-0.6 -0.982 46.2-135.7-127.1 130.5 -7.5 -8.1 -6.3 16 16 A P T 3 S+ 0 0 81 0, 0.0 -7,-0.1 0, 0.0 3,-0.1 0.007 79.0 61.3 -69.8-179.1 -8.6 -4.4 -6.1 17 17 A G T 3 S+ 0 0 84 -9,-0.3 2,-0.3 1,-0.1 -8,-0.1 0.012 107.3 47.1 88.0 -30.1 -10.0 -2.4 -9.0 18 18 A H S < S- 0 0 26 -3,-0.6 -8,-0.6 3,-0.0 2,-0.3 -0.898 78.8-118.8-138.8 167.3 -12.9 -4.8 -9.4 19 19 A Y >> - 0 0 105 -2,-0.3 3,-1.6 -9,-0.1 4,-0.5 -0.766 33.7-106.2-109.3 155.1 -15.5 -6.5 -7.3 20 20 A I G >4 S+ 0 0 67 1,-0.3 3,-0.7 -2,-0.3 6,-0.1 0.814 125.2 53.0 -44.8 -34.2 -16.1 -10.3 -6.9 21 21 A K G 34 S+ 0 0 178 1,-0.2 -1,-0.3 5,-0.0 -11,-0.0 0.832 116.1 37.2 -72.3 -33.2 -19.2 -9.7 -9.1 22 22 A N G <4 S+ 0 0 85 -3,-1.6 -1,-0.2 4,-0.0 -2,-0.2 0.138 88.9 137.0-103.7 17.7 -17.0 -8.1 -11.8 23 23 A C << - 0 0 7 -3,-0.7 3,-0.5 -4,-0.5 4,-0.3 -0.435 48.4-149.0 -68.8 135.3 -14.1 -10.4 -11.2 24 24 A P S > S+ 0 0 80 0, 0.0 3,-2.5 0, 0.0 -1,-0.1 0.928 90.8 71.6 -69.8 -47.6 -12.4 -11.7 -14.4 25 25 A T G > S+ 0 0 6 1,-0.3 3,-1.6 2,-0.1 -2,-0.0 0.767 80.6 81.7 -40.1 -29.3 -11.3 -15.1 -12.9 26 26 A N G 3 S+ 0 0 75 -3,-0.5 2,-0.6 1,-0.3 -1,-0.3 0.898 92.2 45.7 -45.0 -49.5 -15.1 -15.9 -13.1 27 27 A G G < S+ 0 0 69 -3,-2.5 2,-0.3 -4,-0.3 -1,-0.3 -0.258 104.9 83.4 -92.3 47.8 -14.7 -16.7 -16.8 28 28 A D < - 0 0 99 -3,-1.6 3,-0.2 -2,-0.6 0, 0.0 -0.997 54.5-162.2-149.7 146.6 -11.6 -18.8 -16.3 29 29 A K S S+ 0 0 205 -2,-0.3 2,-0.7 1,-0.3 -1,-0.1 0.885 87.7 35.6 -92.8 -51.0 -10.8 -22.4 -15.3 30 30 A N S S+ 0 0 151 0, 0.0 -1,-0.3 0, 0.0 2,-0.3 -0.898 78.2 147.9-111.5 106.5 -7.1 -22.1 -14.3 31 31 A F - 0 0 90 -2,-0.7 -3,-0.0 -3,-0.2 0, 0.0 -0.803 46.7 -86.5-130.3 171.7 -6.2 -18.9 -12.6 32 32 A E - 0 0 119 -2,-0.3 2,-0.4 1,-0.1 -1,-0.1 -0.110 39.8-123.2 -71.1 174.1 -3.8 -17.6 -10.0 33 33 A S - 0 0 97 2,-0.0 -20,-0.1 -19,-0.0 -1,-0.1 -0.958 54.6 -40.0-125.6 142.3 -4.5 -17.6 -6.2 34 34 A G S S- 0 0 33 -2,-0.4 3,-0.1 -22,-0.2 -20,-0.1 0.145 100.5 -48.6 38.2-158.8 -4.4 -14.8 -3.7 35 35 A P S S- 0 0 115 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.941 115.1 -24.0 -69.7 -49.9 -1.7 -12.2 -4.0 36 36 A R - 0 0 207 2,-0.3 0, 0.0 -4,-0.1 0, 0.0 -0.916 65.3 -94.4-153.7 177.3 1.2 -14.6 -4.3 37 37 A I S S+ 0 0 167 -2,-0.3 2,-0.4 -3,-0.1 -3,-0.0 0.774 102.1 83.0 -70.5 -26.5 2.4 -18.1 -3.5 38 38 A K + 0 0 153 1,-0.2 -2,-0.3 -3,-0.0 3,-0.1 -0.674 50.4 174.7 -83.7 128.4 4.0 -16.8 -0.3 39 39 A K - 0 0 194 -2,-0.4 2,-0.3 1,-0.4 -1,-0.2 0.848 63.7 -19.8 -97.3 -47.7 1.7 -16.5 2.6 40 40 A S - 0 0 75 1,-0.1 -1,-0.4 2,-0.0 0, 0.0 -0.976 43.5-137.0-157.4 165.3 4.1 -15.5 5.4 41 41 A T S S- 0 0 125 -2,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.894 72.3 -69.2 -93.0 -54.0 7.7 -15.5 6.4 42 42 A G S S+ 0 0 67 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.326 92.7 108.3 163.8 35.1 7.6 -16.6 10.1 43 43 A I - 0 0 94 1,-0.1 3,-0.2 0, 0.0 -1,-0.1 -0.965 56.4-141.9-131.7 147.7 6.1 -13.9 12.2 44 44 A P S S- 0 0 132 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.946 87.5 -10.3 -69.8 -50.8 2.7 -13.5 14.1 45 45 A R + 0 0 117 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.893 54.4 171.1-157.3 122.0 2.2 -9.8 13.4 46 46 A S S S+ 0 0 79 -2,-0.3 -1,-0.1 -3,-0.2 0, 0.0 0.900 90.6 1.5 -93.9 -59.8 4.6 -7.2 12.0 47 47 A F S S+ 0 0 184 1,-0.1 -2,-0.1 3,-0.0 0, 0.0 0.804 116.9 76.2 -98.0 -39.7 2.4 -4.1 11.4 48 48 A M S S+ 0 0 136 1,-0.1 2,-0.9 2,-0.1 -1,-0.1 0.726 78.8 93.0 -44.7 -22.0 -0.9 -5.4 12.7 49 49 A M + 0 0 94 1,-0.2 -1,-0.1 2,-0.0 -4,-0.0 -0.677 42.6 160.1 -81.1 105.1 0.7 -4.8 16.1 50 50 A E + 0 0 150 -2,-0.9 -1,-0.2 2,-0.1 2,-0.2 0.225 29.2 131.0-107.5 11.1 -0.3 -1.3 17.2 51 51 A V - 0 0 88 2,-0.0 2,-0.4 1,-0.0 -2,-0.0 -0.435 36.6-169.1 -68.4 136.1 0.5 -1.9 20.9 52 52 A K - 0 0 184 -2,-0.2 -2,-0.1 0, 0.0 -1,-0.0 -0.975 10.5-164.2-130.7 143.6 2.7 0.7 22.5 53 53 A D - 0 0 114 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.981 14.4-158.9-132.2 122.8 4.4 0.9 25.9 54 54 A P 0 0 124 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.669 360.0 360.0 -69.7 -16.9 5.8 4.0 27.5 55 55 A N 0 0 170 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.722 360.0 360.0-124.3 360.0 8.1 1.8 29.6