==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 31-DEC-96 1YUI . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*GP*AP*GP*AP*GP*TP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.M.CLORE,J.G.OMICHINSKI,A.M.GRONENBORN . 54 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5995.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 46.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A P 0 0 162 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-103.3 -9.2 9.3 1.0 2 11 A K - 0 0 148 2,-0.1 2,-0.0 0, 0.0 0, 0.0 -0.685 360.0-130.0-142.0-164.1 -8.7 9.2 4.8 3 12 A A - 0 0 89 -2,-0.2 2,-0.5 2,-0.0 0, 0.0 -0.401 18.6-178.7-159.3 76.3 -7.4 6.6 7.3 4 13 A K - 0 0 164 1,-0.1 2,-2.2 2,-0.0 -2,-0.1 -0.641 40.4-119.4 -76.5 124.7 -9.6 5.9 10.3 5 14 A R - 0 0 237 -2,-0.5 2,-0.5 2,-0.1 -1,-0.1 -0.444 40.2-170.4 -70.2 88.5 -7.6 3.4 12.3 6 15 A A - 0 0 64 -2,-2.2 -1,-0.0 1,-0.1 -2,-0.0 -0.704 22.2-169.3 -84.5 122.4 -10.2 0.7 12.1 7 16 A K S S+ 0 0 181 -2,-0.5 -1,-0.1 1,-0.2 5,-0.1 0.193 72.0 90.3 -92.0 15.1 -9.4 -2.3 14.3 8 17 A H + 0 0 187 2,-0.0 -1,-0.2 0, 0.0 4,-0.1 0.877 58.8 95.4 -80.4 -39.2 -12.2 -4.2 12.4 9 18 A P S S- 0 0 71 0, 0.0 3,-0.2 0, 0.0 0, 0.0 -0.163 82.5-108.4 -52.4 145.6 -10.1 -5.7 9.6 10 19 A P S S+ 0 0 127 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.081 95.7 59.3 -69.4 174.8 -9.0 -9.4 10.3 11 20 A G + 0 0 73 1,-0.2 2,-1.4 0, 0.0 0, 0.0 0.790 63.7 151.6 75.3 25.1 -5.4 -10.3 11.2 12 21 A T - 0 0 92 -3,-0.2 -1,-0.2 -4,-0.1 2,-0.2 -0.652 24.2-172.9 -91.3 86.9 -5.4 -8.0 14.2 13 22 A E - 0 0 170 -2,-1.4 0, 0.0 -3,-0.1 0, 0.0 -0.508 21.7-135.2 -79.2 147.8 -2.8 -9.8 16.5 14 23 A K - 0 0 191 -2,-0.2 2,-0.1 4,-0.0 -1,-0.1 -0.626 24.4-171.9-104.4 76.4 -2.4 -8.4 20.0 15 24 A P >> - 0 0 63 0, 0.0 3,-1.0 0, 0.0 4,-0.5 -0.404 25.6-135.2 -66.7 138.0 1.4 -8.3 20.6 16 25 A R H 3>>S+ 0 0 191 1,-0.3 4,-2.6 2,-0.2 5,-0.6 0.623 94.4 86.6 -72.5 -7.3 2.3 -7.5 24.3 17 26 A S H 345S+ 0 0 94 1,-0.2 -1,-0.3 3,-0.2 -3,-0.0 0.453 92.7 48.9 -71.1 7.0 4.9 -5.0 23.0 18 27 A R H <45S+ 0 0 180 -3,-1.0 -1,-0.2 3,-0.1 4,-0.2 0.731 122.2 25.5-111.6 -41.9 1.9 -2.6 23.0 19 28 A S H <5S+ 0 0 75 -4,-0.5 -2,-0.2 2,-0.1 3,-0.2 0.712 119.4 57.4 -97.1 -24.1 0.3 -3.1 26.4 20 29 A Q T <5S+ 0 0 144 -4,-2.6 -3,-0.2 1,-0.2 -1,-0.1 0.922 96.9 61.6 -73.7 -40.8 3.4 -4.3 28.3 21 30 A S S - 0 0 0 5,-2.2 4,-1.6 -2,-0.3 5,-0.1 -0.807 13.0-153.7 -92.9 118.4 -4.1 10.3 39.3 28 37 A P T 4 S+ 0 0 108 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.476 92.3 51.4 -71.7 3.3 -2.4 12.3 42.2 29 38 A I T 4 S+ 0 0 91 3,-0.1 -2,-0.0 0, 0.0 19,-0.0 0.841 132.7 3.6-103.2 -56.2 -5.6 14.6 42.3 30 39 A C T 4 S- 0 0 63 2,-0.1 3,-0.1 0, 0.0 -3,-0.1 0.145 93.6-119.2-117.9 20.0 -8.6 12.2 42.6 31 40 A Y < + 0 0 178 -4,-1.6 0, 0.0 1,-0.2 0, 0.0 0.693 49.7 172.1 53.0 17.6 -6.6 8.9 42.8 32 41 A A - 0 0 23 -5,-0.1 -5,-2.2 -6,-0.1 2,-0.9 -0.308 33.0-128.7 -55.5 136.3 -8.3 7.8 39.6 33 42 A V E +A 26 0A 117 -7,-0.2 2,-0.5 -3,-0.1 -7,-0.3 -0.766 31.2 180.0 -94.6 103.6 -6.6 4.5 38.5 34 43 A I E -A 25 0A 34 -9,-2.9 -9,-1.8 -2,-0.9 6,-0.1 -0.880 15.7-158.8-104.2 125.6 -5.6 4.8 34.9 35 44 A R S S+ 0 0 209 -2,-0.5 2,-0.2 -11,-0.2 -1,-0.2 1.000 76.4 51.5 -66.6 -68.8 -3.8 1.8 33.4 36 45 A Q S > S- 0 0 58 1,-0.1 4,-1.4 -14,-0.1 3,-0.1 -0.495 76.4-141.0 -73.0 137.3 -1.9 3.3 30.4 37 46 A S H > S+ 0 0 63 1,-0.2 4,-1.5 2,-0.2 -1,-0.1 0.892 101.7 60.3 -65.7 -37.1 0.2 6.3 31.2 38 47 A R H > S+ 0 0 124 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.924 104.9 49.7 -58.0 -39.5 -0.8 8.0 28.0 39 48 A N H > S+ 0 0 41 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.877 99.1 66.5 -68.2 -33.3 -4.4 7.9 29.2 40 49 A L H X S+ 0 0 38 -4,-1.4 4,-1.5 1,-0.2 -1,-0.2 0.942 100.2 51.0 -52.6 -45.2 -3.4 9.4 32.5 41 50 A R H >X S+ 0 0 194 -4,-1.5 4,-1.5 1,-0.2 3,-0.7 0.957 108.6 50.2 -57.6 -48.9 -2.5 12.6 30.6 42 51 A R H 3X S+ 0 0 150 -4,-1.4 4,-1.2 1,-0.3 -1,-0.2 0.863 105.1 58.6 -59.6 -33.2 -6.0 12.6 29.0 43 52 A H H 3X S+ 0 0 22 -4,-2.5 4,-2.7 1,-0.2 -1,-0.3 0.866 101.2 56.1 -66.5 -31.8 -7.5 12.1 32.4 44 53 A L H S+ 0 0 46 -4,-1.5 5,-2.9 -3,-0.7 4,-0.9 0.940 109.7 44.0 -65.6 -45.2 -5.9 15.4 33.5 45 54 A E H <5S+ 0 0 134 -4,-1.5 -1,-0.2 4,-0.2 -2,-0.2 0.686 121.2 41.0 -74.5 -16.3 -7.5 17.4 30.7 46 55 A L H <5S+ 0 0 108 -4,-1.2 -2,-0.2 -5,-0.2 -3,-0.2 0.827 126.4 27.3 -99.4 -40.7 -10.9 15.7 31.2 47 56 A R H <5S+ 0 0 170 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.308 139.4 4.4-105.8 10.1 -11.3 15.5 35.1 48 57 A H T ><5S+ 0 0 41 -4,-0.9 3,-0.7 -5,-0.2 -3,-0.2 0.245 130.5 36.6-152.7 -73.2 -9.1 18.5 36.1 49 58 A F T 3