==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 31-DEC-96 1YUJ . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*GP*AP*GP*AP*GP*TP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR G.M.CLORE,J.G.OMICHINSKI,A.M.GRONENBORN . 54 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5966.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 20.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A P 0 0 188 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -74.9 -7.5 11.7 2.4 2 11 A K - 0 0 195 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.493 360.0 -97.8 -79.4 151.3 -5.7 8.9 4.3 3 12 A A - 0 0 100 -2,-0.1 -1,-0.1 1,-0.1 2,-0.1 -0.287 42.3-108.3 -65.7 154.8 -7.9 5.9 5.5 4 13 A K - 0 0 198 1,-0.1 2,-1.4 -3,-0.1 -1,-0.1 -0.393 36.4 -95.8 -79.8 163.1 -9.0 6.0 9.2 5 14 A R + 0 0 248 -2,-0.1 2,-0.5 2,-0.0 -1,-0.1 -0.615 51.7 179.4 -81.8 93.5 -7.6 3.7 11.8 6 15 A A - 0 0 65 -2,-1.4 -3,-0.0 1,-0.1 0, 0.0 -0.811 25.3-163.9 -97.3 131.4 -10.2 0.9 11.8 7 16 A K S S+ 0 0 181 -2,-0.5 -1,-0.1 1,-0.2 5,-0.1 0.258 77.1 86.7 -92.1 11.7 -9.6 -2.1 14.2 8 17 A H + 0 0 181 2,-0.0 -1,-0.2 0, 0.0 4,-0.1 0.816 60.7 101.0 -82.2 -31.6 -12.2 -4.1 12.1 9 18 A P S S- 0 0 69 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.094 81.5 -98.0 -53.2 154.2 -9.9 -5.5 9.4 10 19 A P S S+ 0 0 129 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.200 100.8 49.7 -70.7 164.7 -8.8 -9.2 9.7 11 20 A G + 0 0 75 1,-0.2 2,-1.3 0, 0.0 0, 0.0 0.892 65.5 160.9 74.3 37.7 -5.4 -10.2 11.2 12 21 A T - 0 0 86 -3,-0.1 2,-0.2 -4,-0.1 -1,-0.2 -0.657 16.5-175.5 -93.3 85.4 -5.8 -8.0 14.3 13 22 A E - 0 0 168 -2,-1.3 0, 0.0 -3,-0.1 0, 0.0 -0.571 21.0-142.5 -81.8 144.4 -3.3 -9.6 16.6 14 23 A K - 0 0 184 -2,-0.2 2,-0.1 4,-0.0 -1,-0.1 -0.645 24.4-175.3-106.7 76.6 -3.1 -8.3 20.2 15 24 A P > - 0 0 60 0, 0.0 3,-1.2 0, 0.0 4,-0.4 -0.429 30.1-134.3 -71.3 142.7 0.6 -8.4 21.1 16 25 A R T 3> S+ 0 0 193 1,-0.3 4,-3.5 2,-0.2 3,-0.5 0.597 93.1 90.9 -73.5 -5.8 1.6 -7.4 24.6 17 26 A S T 34 S+ 0 0 84 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.579 88.9 49.4 -66.8 -1.9 4.3 -5.3 23.1 18 27 A R T <4 S+ 0 0 182 -3,-1.2 -1,-0.2 2,-0.1 -2,-0.2 0.692 122.0 28.8-105.7 -27.8 1.6 -2.5 23.2 19 28 A S T >4 S+ 0 0 69 -3,-0.5 3,-0.8 -4,-0.4 -2,-0.2 0.764 113.2 62.0-101.7 -35.1 0.5 -2.9 26.8 20 29 A Q T 3< S+ 0 0 138 -4,-3.5 -3,-0.2 1,-0.2 -2,-0.1 0.904 97.8 59.7 -59.5 -39.5 3.7 -4.2 28.4 21 30 A S T 3 S+ 0 0 88 -5,-0.5 2,-0.3 -4,-0.1 -1,-0.2 0.825 100.3 66.8 -60.2 -29.8 5.5 -1.0 27.4 22 31 A E S < S- 0 0 47 -3,-0.8 14,-0.1 -4,-0.2 3,-0.1 -0.718 71.3-157.7 -95.2 145.4 3.0 1.0 29.6 23 32 A Q - 0 0 125 -2,-0.3 14,-0.2 1,-0.2 -3,-0.0 -0.882 37.9 -75.7-119.0 151.7 2.8 0.6 33.4 24 33 A P - 0 0 111 0, 0.0 2,-0.3 0, 0.0 11,-0.2 0.110 50.6-157.8 -38.9 156.3 -0.1 1.4 35.7 25 34 A A E -A 34 0A 13 9,-2.0 9,-3.0 11,-0.1 2,-0.3 -0.988 9.5-161.1-147.5 136.0 -0.7 5.1 36.4 26 35 A T E -A 33 0A 80 -2,-0.3 7,-0.2 7,-0.2 6,-0.1 -0.872 24.3-119.3-116.4 149.6 -2.5 7.1 39.2 27 36 A C > - 0 0 0 5,-2.6 4,-1.1 -2,-0.3 5,-0.0 -0.746 12.2-151.8 -88.1 127.2 -3.8 10.7 39.1 28 37 A P T 4 S+ 0 0 106 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.572 92.7 50.1 -75.2 -6.2 -2.2 12.9 41.7 29 38 A I T 4 S+ 0 0 90 3,-0.1 -2,-0.0 1,-0.0 19,-0.0 0.892 132.5 4.6 -97.2 -55.9 -5.3 15.1 41.8 30 39 A C T 4 S- 0 0 61 2,-0.1 3,-0.1 0, 0.0 -3,-0.1 0.198 93.1-119.3-115.6 15.6 -8.3 12.7 42.3 31 40 A Y < + 0 0 181 -4,-1.1 0, 0.0 1,-0.2 0, 0.0 0.730 52.0 169.7 55.3 20.0 -6.3 9.5 42.7 32 41 A A - 0 0 24 -6,-0.1 -5,-2.6 1,-0.1 2,-0.8 -0.358 33.0-128.6 -60.3 140.0 -8.1 8.2 39.6 33 42 A V E +A 26 0A 110 -7,-0.2 2,-0.5 -3,-0.1 -7,-0.2 -0.819 29.9 178.8 -99.6 111.6 -6.4 5.0 38.5 34 43 A I E -A 25 0A 34 -9,-3.0 -9,-2.0 -2,-0.8 6,-0.1 -0.908 17.6-156.5-109.6 130.0 -5.4 4.9 34.8 35 44 A R S S+ 0 0 214 -2,-0.5 2,-0.4 -11,-0.2 -1,-0.2 0.980 78.2 55.0 -70.9 -56.4 -3.6 1.8 33.5 36 45 A Q S > S- 0 0 58 1,-0.2 4,-1.5 -12,-0.1 -11,-0.1 -0.628 74.8-143.1 -81.5 133.2 -1.8 3.3 30.4 37 46 A S H > S+ 0 0 46 -2,-0.4 4,-1.4 1,-0.2 -1,-0.2 0.904 102.6 57.3 -62.0 -37.0 0.4 6.3 31.1 38 47 A R H > S+ 0 0 113 1,-0.2 4,-1.3 2,-0.2 3,-0.3 0.947 105.6 50.3 -60.2 -43.0 -0.7 7.9 27.8 39 48 A N H > S+ 0 0 49 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.839 100.3 66.3 -64.5 -28.7 -4.3 7.7 28.9 40 49 A L H X S+ 0 0 35 -4,-1.5 4,-1.5 1,-0.2 -1,-0.2 0.954 98.5 51.0 -59.4 -45.3 -3.3 9.4 32.2 41 50 A R H X S+ 0 0 174 -4,-1.4 4,-1.3 -3,-0.3 3,-0.4 0.935 108.8 51.9 -58.3 -42.0 -2.4 12.6 30.3 42 51 A R H X S+ 0 0 151 -4,-1.3 4,-1.7 1,-0.2 -1,-0.2 0.903 103.1 58.6 -62.0 -37.4 -5.9 12.5 28.7 43 52 A H H X S+ 0 0 20 -4,-2.2 4,-2.3 1,-0.2 -1,-0.2 0.875 98.7 60.4 -61.4 -32.9 -7.4 12.1 32.1 44 53 A L H X>S+ 0 0 43 -4,-1.5 5,-3.1 -3,-0.4 4,-0.9 0.966 109.2 40.7 -60.0 -49.3 -5.8 15.4 33.0 45 54 A E H <5S+ 0 0 97 -4,-1.3 -1,-0.2 3,-0.2 -2,-0.2 0.768 117.4 51.5 -70.4 -24.4 -7.7 17.3 30.2 46 55 A L H <5S+ 0 0 98 -4,-1.7 -2,-0.2 -5,-0.2 -3,-0.2 0.975 126.5 14.7 -79.3 -59.7 -10.9 15.3 31.0 47 56 A R H <5S+ 0 0 178 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.1 0.177 141.1 14.5-103.5 21.0 -11.5 15.7 34.8 48 57 A H T <5S+ 0 0 49 -4,-0.9 3,-0.5 -5,-0.2 -3,-0.2 0.264 127.5 32.7-150.9 -73.3 -9.0 18.6 35.5 49 58 A F S