==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 05-APR-07 2YU3 . COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE III 39 KDA . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8019.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 27.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 71.0 -26.9 -37.7 -1.2 2 2 A S - 0 0 119 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.754 360.0-153.8 -96.5 139.5 -26.7 -34.7 -3.5 3 3 A S + 0 0 122 -2,-0.4 -1,-0.2 1,-0.0 0, 0.0 0.984 40.0 144.7 -72.6 -62.0 -25.1 -31.5 -2.4 4 4 A G + 0 0 54 1,-0.0 -1,-0.0 2,-0.0 0, 0.0 -0.077 16.8 110.8 54.4-157.3 -26.9 -29.0 -4.6 5 5 A S + 0 0 127 1,-0.2 2,-0.4 3,-0.0 3,-0.1 0.972 40.9 166.8 52.5 84.5 -27.7 -25.5 -3.2 6 6 A S - 0 0 121 2,-0.0 -1,-0.2 1,-0.0 2,-0.1 -0.917 48.2 -25.4-134.6 107.8 -25.4 -23.3 -5.2 7 7 A G - 0 0 81 -2,-0.4 3,-0.0 2,-0.0 -1,-0.0 -0.338 47.2-170.5 88.1-172.5 -25.9 -19.5 -5.2 8 8 A G - 0 0 84 -2,-0.1 2,-0.3 -3,-0.1 -2,-0.0 -0.048 58.7 -1.9-179.4 -64.6 -29.0 -17.5 -4.6 9 9 A Q - 0 0 182 2,-0.0 2,-0.4 0, 0.0 -2,-0.0 -0.989 48.3-164.7-153.7 143.0 -28.9 -13.8 -5.3 10 10 A L + 0 0 161 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.984 9.7 172.8-134.9 124.1 -26.4 -11.2 -6.4 11 11 A D + 0 0 143 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.714 15.4 170.0-131.7 82.3 -26.6 -7.4 -6.2 12 12 A L - 0 0 152 -2,-0.3 2,-0.3 3,-0.0 -2,-0.0 -0.532 20.0-142.8 -91.0 159.1 -23.4 -5.7 -7.2 13 13 A L - 0 0 143 -2,-0.2 2,-0.2 0, 0.0 -2,-0.0 -0.930 30.1 -92.1-124.2 147.9 -22.9 -2.0 -7.8 14 14 A R + 0 0 237 -2,-0.3 2,-0.3 78,-0.0 0, 0.0 -0.373 63.1 151.1 -58.8 118.9 -20.8 -0.1 -10.3 15 15 A S - 0 0 86 -2,-0.2 2,-0.4 0, 0.0 -3,-0.0 -0.929 38.2-126.6-146.0 168.3 -17.4 0.6 -8.7 16 16 A N - 0 0 142 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.958 6.9-166.4-124.1 140.4 -13.8 1.1 -9.6 17 17 A T - 0 0 71 -2,-0.4 2,-0.4 1,-0.2 40,-0.2 0.929 33.7-141.3 -86.6 -55.6 -10.7 -0.7 -8.3 18 18 A G - 0 0 46 38,-0.1 2,-0.3 39,-0.1 70,-0.3 -0.989 43.2 -15.0 135.0-129.2 -7.9 1.5 -9.5 19 19 A L - 0 0 91 -2,-0.4 37,-2.0 68,-0.1 38,-0.3 -0.832 55.7-127.1-117.0 155.5 -4.5 0.6 -10.9 20 20 A L E -AB 55 86A 25 66,-1.2 66,-1.8 -2,-0.3 2,-0.3 -0.721 22.4-167.5-101.3 151.4 -2.5 -2.7 -10.8 21 21 A Y E +AB 54 85A 36 33,-1.1 33,-1.9 -2,-0.3 2,-0.3 -0.930 7.1 177.0-135.7 159.3 1.1 -3.1 -9.5 22 22 A R E - B 0 84A 53 62,-1.0 62,-3.2 -2,-0.3 2,-0.2 -0.988 29.3-105.2-158.6 157.2 3.8 -5.8 -9.6 23 23 A I E - B 0 83A 23 23,-0.6 2,-0.6 27,-0.3 60,-0.3 -0.516 30.9-122.1 -86.3 155.1 7.4 -6.5 -8.6 24 24 A K - 0 0 92 58,-1.9 3,-0.2 -2,-0.2 -1,-0.0 -0.872 67.8 -33.7-102.2 119.5 10.3 -6.5 -11.0 25 25 A D - 0 0 97 -2,-0.6 -2,-0.0 1,-0.2 57,-0.0 0.126 62.0-111.4 60.3 176.6 12.3 -9.7 -11.2 26 26 A S S S+ 0 0 97 -3,-0.0 -1,-0.2 0, 0.0 3,-0.1 0.004 103.1 37.0-133.8 26.9 12.9 -11.9 -8.1 27 27 A Q S S+ 0 0 166 -3,-0.2 2,-2.4 1,-0.1 -2,-0.1 0.465 97.5 65.8-139.4 -60.0 16.7 -11.4 -7.6 28 28 A N S S+ 0 0 140 1,-0.1 2,-0.2 2,-0.0 -4,-0.1 -0.455 85.1 89.2 -75.2 73.9 17.8 -7.9 -8.3 29 29 A A + 0 0 34 -2,-2.4 -1,-0.1 -3,-0.1 53,-0.0 -0.592 41.7 90.7-172.5 103.5 15.9 -6.3 -5.4 30 30 A G + 0 0 77 -2,-0.2 -1,-0.1 2,-0.0 -2,-0.0 0.237 65.3 76.9 171.7 39.2 17.0 -5.8 -1.8 31 31 A K + 0 0 170 -3,-0.1 -2,-0.0 0, 0.0 -3,-0.0 0.623 56.4 170.8-126.0 -42.7 18.7 -2.4 -1.4 32 32 A M - 0 0 23 48,-0.1 4,-0.1 1,-0.1 -2,-0.0 0.063 18.6-155.9 52.6-170.4 15.9 0.2 -1.2 33 33 A K + 0 0 184 2,-0.4 -1,-0.1 3,-0.0 3,-0.0 0.127 67.1 39.2-161.9 -66.7 16.7 3.8 -0.2 34 34 A G S S+ 0 0 37 1,-0.1 5,-0.1 39,-0.1 39,-0.0 0.806 111.7 23.9 -66.8-114.0 13.9 5.8 1.2 35 35 A S - 0 0 27 1,-0.1 -2,-0.4 2,-0.1 -1,-0.1 -0.233 61.7-167.0 -55.5 139.4 11.5 4.1 3.6 36 36 A D S > S+ 0 0 115 3,-0.1 4,-1.1 -4,-0.1 -1,-0.1 0.906 82.9 6.2 -93.2 -61.0 13.0 1.0 5.3 37 37 A N H > S+ 0 0 126 2,-0.2 4,-2.4 3,-0.1 5,-0.2 0.864 126.7 60.0 -90.9 -44.4 10.1 -0.8 6.9 38 38 A Q H 4 S+ 0 0 87 1,-0.2 4,-0.3 2,-0.2 -1,-0.1 0.779 117.0 36.7 -54.9 -27.0 7.2 1.3 5.5 39 39 A E H >> S+ 0 0 0 2,-0.2 4,-2.5 3,-0.1 3,-1.0 0.845 110.6 57.6 -92.7 -42.7 8.5 0.3 2.1 40 40 A K H 3X S+ 0 0 130 -4,-1.1 4,-1.1 1,-0.3 -2,-0.2 0.802 103.5 57.2 -58.3 -29.2 9.6 -3.3 2.9 41 41 A L H 3X S+ 0 0 77 -4,-2.4 4,-0.9 2,-0.2 -1,-0.3 0.790 110.5 43.5 -72.6 -28.2 6.0 -3.9 4.0 42 42 A V H X> S+ 0 0 0 -3,-1.0 4,-2.5 -4,-0.3 3,-0.6 0.944 109.3 52.3 -81.0 -54.3 4.7 -2.8 0.6 43 43 A Y H 3X S+ 0 0 29 -4,-2.5 4,-2.3 1,-0.3 5,-0.2 0.808 107.1 58.1 -52.3 -30.8 7.2 -4.6 -1.7 44 44 A Q H 3X S+ 0 0 116 -4,-1.1 4,-1.9 -5,-0.3 -1,-0.3 0.914 108.2 43.2 -67.0 -44.2 6.3 -7.8 0.3 45 45 A I H < S+ 0 0 84 -4,-2.3 3,-1.0 -5,-0.3 -2,-0.2 0.892 102.9 58.4 -67.8 -40.8 5.9 -9.5 -4.5 48 48 A D H 3< S+ 0 0 119 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.796 99.1 61.2 -59.2 -28.5 3.4 -12.0 -3.1 49 49 A A H >< S+ 0 0 17 -4,-0.8 3,-1.8 -3,-0.2 2,-0.5 0.823 79.1 172.2 -68.3 -31.8 1.1 -11.1 -6.0 50 50 A G T << S- 0 0 32 -3,-1.0 -27,-0.3 -4,-0.7 -1,-0.2 -0.429 72.2 -9.8 62.1-112.6 3.7 -12.2 -8.5 51 51 A N T 3 S+ 0 0 130 -2,-0.5 -1,-0.3 1,-0.2 -2,-0.1 0.743 133.0 65.6 -88.9 -27.3 2.1 -12.2 -11.9 52 52 A K S < S- 0 0 183 -3,-1.8 -2,-0.2 -4,-0.1 -1,-0.2 0.791 93.1-158.8 -64.9 -27.9 -1.4 -11.6 -10.6 53 53 A G - 0 0 10 -4,-0.3 2,-0.4 -7,-0.2 -31,-0.2 0.280 11.3-102.8 64.5 161.1 -0.3 -8.2 -9.3 54 54 A I E -A 21 0A 19 -33,-1.9 -33,-1.1 -4,-0.1 2,-0.1 -0.979 25.0-123.0-126.2 134.2 -1.9 -6.2 -6.5 55 55 A W E > -A 20 0A 59 -2,-0.4 4,-2.7 -35,-0.2 3,-0.4 -0.398 26.5-115.9 -72.1 148.2 -4.2 -3.2 -6.8 56 56 A S H > S+ 0 0 38 -37,-2.0 4,-0.7 1,-0.3 -1,-0.1 0.797 119.3 53.0 -52.8 -29.3 -3.2 0.0 -5.1 57 57 A R H > S+ 0 0 144 -38,-0.3 4,-1.5 -40,-0.2 -1,-0.3 0.887 111.6 43.5 -74.3 -40.9 -6.4 -0.5 -3.0 58 58 A D H > S+ 0 0 80 -3,-0.4 4,-2.2 2,-0.2 3,-0.4 0.970 113.1 48.8 -68.6 -55.8 -5.5 -4.0 -2.0 59 59 A V H X S+ 0 0 0 -4,-2.7 4,-1.2 1,-0.2 -1,-0.2 0.765 110.7 55.7 -55.8 -25.3 -1.8 -3.4 -1.2 60 60 A R H X>S+ 0 0 85 -4,-0.7 4,-1.7 -5,-0.4 5,-1.3 0.894 106.1 48.2 -75.0 -41.9 -3.1 -0.4 0.9 61 61 A Y H <5S+ 0 0 161 -4,-1.5 -2,-0.2 -3,-0.4 -1,-0.1 0.945 115.5 43.1 -63.8 -49.9 -5.4 -2.5 3.0 62 62 A K H <5S+ 0 0 145 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.817 116.5 49.2 -65.9 -30.8 -2.8 -5.1 3.8 63 63 A S H <5S- 0 0 4 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.750 96.8-144.6 -79.5 -25.5 -0.3 -2.3 4.4 64 64 A N T <5 + 0 0 144 -4,-1.7 -3,-0.2 1,-0.2 -4,-0.1 0.839 53.1 134.6 63.3 33.5 -2.6 -0.4 6.6 65 65 A L < - 0 0 18 -5,-1.3 -1,-0.2 -6,-0.2 -2,-0.1 -0.910 56.2-114.1-118.1 143.7 -1.3 2.8 5.3 66 66 A P >> - 0 0 69 0, 0.0 4,-2.4 0, 0.0 3,-1.8 -0.248 32.7-105.3 -69.8 159.2 -3.2 5.9 4.1 67 67 A L H 3> S+ 0 0 121 1,-0.3 4,-2.9 2,-0.2 5,-0.2 0.867 121.1 63.6 -51.9 -39.3 -3.2 7.1 0.5 68 68 A T H 34 S+ 0 0 97 2,-0.2 4,-0.3 1,-0.2 -1,-0.3 0.806 112.5 36.2 -56.5 -30.0 -0.8 9.9 1.5 69 69 A E H X> S+ 0 0 64 -3,-1.8 4,-2.4 2,-0.2 3,-1.6 0.932 116.9 47.5 -87.5 -58.7 1.7 7.2 2.4 70 70 A I H 3X S+ 0 0 1 -4,-2.4 4,-3.0 1,-0.3 5,-0.4 0.843 105.5 63.5 -51.9 -35.9 1.1 4.6 -0.3 71 71 A N H 3X S+ 0 0 88 -4,-2.9 4,-0.5 -5,-0.3 -1,-0.3 0.844 110.5 37.7 -58.6 -34.4 1.1 7.4 -2.9 72 72 A K H <> S+ 0 0 99 -3,-1.6 4,-1.9 -4,-0.3 -2,-0.2 0.848 118.0 49.4 -85.0 -38.5 4.8 8.0 -1.9 73 73 A I H X S+ 0 0 0 -4,-2.4 4,-2.1 2,-0.2 5,-0.4 0.976 109.6 48.9 -64.7 -57.5 5.7 4.4 -1.4 74 74 A L H X S+ 0 0 7 -4,-3.0 4,-0.9 1,-0.3 -1,-0.2 0.828 117.0 45.1 -51.9 -33.6 4.3 3.1 -4.7 75 75 A K H X S+ 0 0 149 -4,-0.5 4,-2.0 -5,-0.4 -1,-0.3 0.796 108.8 57.6 -80.8 -30.6 6.1 6.0 -6.4 76 76 A N H X S+ 0 0 39 -4,-1.9 4,-2.0 -3,-0.3 5,-0.2 0.986 106.6 44.8 -63.1 -61.1 9.3 5.3 -4.4 77 77 A L H X>S+ 0 0 0 -4,-2.1 5,-1.9 1,-0.2 6,-0.7 0.853 110.5 59.1 -51.9 -37.3 9.8 1.7 -5.5 78 78 A E H ><5S+ 0 0 103 -4,-0.9 3,-2.0 -5,-0.4 -1,-0.2 0.964 105.6 45.0 -57.3 -56.5 9.1 2.9 -9.1 79 79 A S H 3<5S+ 0 0 106 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.858 108.1 59.1 -56.7 -36.7 11.9 5.4 -9.2 80 80 A K H 3<5S- 0 0 40 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.636 107.2-131.9 -68.0 -12.9 14.2 2.8 -7.7 81 81 A K T <<5S+ 0 0 168 -3,-2.0 -3,-0.2 -4,-0.5 -2,-0.1 0.844 74.3 119.2 63.6 34.2 13.3 0.6 -10.7 82 82 A L S