==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-APR-07 2YUF . COMPND 2 MOLECULE: NGFI-A-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL . 142 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 11575.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 59.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 64 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 2 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 93.3 -19.3 17.2 -4.7 2 2 A S - 0 0 109 78,-0.1 3,-0.1 2,-0.1 79,-0.0 0.251 360.0-175.3 60.3 166.4 -15.6 16.7 -5.0 3 3 A S + 0 0 136 1,-0.1 2,-0.5 0, 0.0 -1,-0.0 0.209 61.8 26.0-157.0 -64.9 -13.5 18.1 -7.8 4 4 A G - 0 0 64 76,-0.1 -1,-0.1 0, 0.0 76,-0.1 -0.968 65.6-150.4-123.6 123.8 -9.8 17.0 -7.8 5 5 A S - 0 0 125 -2,-0.5 2,-0.0 1,-0.2 74,-0.0 -0.044 31.2 -87.0 -76.1-176.1 -8.4 13.8 -6.3 6 6 A S - 0 0 100 1,-0.2 -1,-0.2 0, 0.0 3,-0.1 -0.178 36.6-115.7 -84.7-178.2 -5.0 13.3 -4.9 7 7 A G - 0 0 75 1,-0.2 2,-0.3 -2,-0.0 -1,-0.2 0.583 60.5 -35.8 -88.3-121.1 -1.8 12.3 -6.7 8 8 A E - 0 0 194 1,-0.2 -1,-0.2 0, 0.0 3,-0.1 -0.800 40.7-173.2-110.3 152.2 0.1 9.1 -6.1 9 9 A A + 0 0 45 -2,-0.3 -1,-0.2 1,-0.2 85,-0.1 0.818 67.6 31.7-103.9 -71.8 0.7 7.1 -2.9 10 10 A L S S- 0 0 25 83,-0.2 -1,-0.2 1,-0.1 2,-0.1 -0.342 84.5-106.1 -85.5 169.8 3.1 4.2 -3.4 11 11 A D > - 0 0 109 -2,-0.1 4,-2.4 1,-0.1 5,-0.2 -0.433 27.0-108.8 -92.1 169.1 6.0 4.1 -5.8 12 12 A A H > S+ 0 0 84 1,-0.2 4,-0.6 2,-0.2 -1,-0.1 0.816 122.7 41.8 -65.9 -30.9 6.3 2.1 -9.1 13 13 A A H > S+ 0 0 75 2,-0.2 4,-0.9 1,-0.1 -1,-0.2 0.802 114.3 50.7 -85.2 -32.7 8.8 -0.2 -7.4 14 14 A A H > S+ 0 0 14 1,-0.2 4,-0.9 2,-0.2 3,-0.2 0.847 106.5 54.9 -73.1 -35.4 6.9 -0.5 -4.1 15 15 A A H X S+ 0 0 31 -4,-2.4 4,-2.0 1,-0.2 5,-0.2 0.820 100.6 60.7 -67.3 -31.2 3.6 -1.3 -5.8 16 16 A L H X S+ 0 0 103 -4,-0.6 4,-2.4 1,-0.2 -1,-0.2 0.878 100.6 53.5 -63.6 -38.7 5.3 -4.2 -7.6 17 17 A S H X S+ 0 0 55 -4,-0.9 4,-1.3 -3,-0.2 -1,-0.2 0.810 109.7 49.0 -66.1 -30.2 6.1 -5.9 -4.3 18 18 A V H X S+ 0 0 0 -4,-0.9 4,-1.9 2,-0.2 -2,-0.2 0.866 114.8 42.6 -77.0 -38.4 2.4 -5.6 -3.3 19 19 A A H X S+ 0 0 37 -4,-2.0 4,-1.1 2,-0.2 -2,-0.2 0.799 116.5 48.4 -77.3 -30.2 1.1 -7.1 -6.5 20 20 A E H X S+ 0 0 119 -4,-2.4 4,-0.6 -5,-0.2 -2,-0.2 0.801 115.1 44.6 -79.0 -30.8 3.8 -9.8 -6.5 21 21 A C H X S+ 0 0 21 -4,-1.3 4,-1.4 -5,-0.2 -2,-0.2 0.866 112.9 49.6 -80.2 -39.4 3.1 -10.7 -2.9 22 22 A V H X S+ 0 0 7 -4,-1.9 4,-1.1 1,-0.2 -2,-0.2 0.808 112.4 48.9 -69.1 -30.2 -0.6 -10.7 -3.2 23 23 A E H < S+ 0 0 119 -4,-1.1 -1,-0.2 2,-0.2 -2,-0.2 0.698 109.7 52.4 -81.6 -20.9 -0.4 -12.9 -6.3 24 24 A R H X S+ 0 0 182 -4,-0.6 4,-0.7 2,-0.2 -2,-0.2 0.763 112.2 44.2 -84.6 -28.1 1.9 -15.3 -4.6 25 25 A M H X S+ 0 0 25 -4,-1.4 4,-2.6 2,-0.2 -2,-0.2 0.736 100.6 70.5 -86.9 -25.9 -0.4 -15.8 -1.6 26 26 A A H < S+ 0 0 23 -4,-1.1 -2,-0.2 2,-0.2 -1,-0.1 0.950 96.5 50.6 -55.8 -53.7 -3.5 -16.2 -3.7 27 27 A P H 4 S+ 0 0 104 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.920 117.6 38.7 -50.9 -51.3 -2.5 -19.6 -5.1 28 28 A T H < S+ 0 0 117 -4,-0.7 -2,-0.2 2,-0.1 -3,-0.1 0.815 103.3 88.3 -70.6 -31.0 -1.8 -21.0 -1.6 29 29 A L S < S- 0 0 46 -4,-2.6 2,-0.0 1,-0.1 -4,-0.0 -0.450 82.4-120.0 -70.9 139.7 -4.8 -19.1 -0.2 30 30 A P - 0 0 102 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.235 25.9-108.0 -75.4 167.4 -8.1 -21.0 -0.3 31 31 A K - 0 0 184 75,-0.0 2,-0.4 77,-0.0 75,-0.1 -0.473 26.1-119.2 -93.2 166.7 -11.3 -19.8 -2.1 32 32 A S - 0 0 50 -2,-0.1 2,-0.8 4,-0.0 75,-0.1 -0.871 27.5-107.6-110.3 141.2 -14.5 -18.4 -0.6 33 33 A D > - 0 0 106 -2,-0.4 4,-1.8 1,-0.2 5,-0.2 -0.518 33.2-178.6 -68.1 106.0 -17.9 -19.9 -1.0 34 34 A L H > S+ 0 0 99 -2,-0.8 4,-1.2 1,-0.2 -1,-0.2 0.812 82.2 54.1 -75.1 -31.2 -19.7 -17.5 -3.3 35 35 A N H > S+ 0 0 113 2,-0.2 4,-1.2 1,-0.1 -1,-0.2 0.832 109.4 48.7 -71.6 -32.9 -23.0 -19.6 -3.2 36 36 A E H > S+ 0 0 117 2,-0.2 4,-1.2 1,-0.2 3,-0.3 0.965 111.7 45.5 -71.0 -55.0 -23.0 -19.4 0.6 37 37 A V H X S+ 0 0 25 -4,-1.8 4,-1.2 1,-0.2 -1,-0.2 0.780 104.3 68.7 -59.4 -27.2 -22.4 -15.7 1.0 38 38 A K H >X S+ 0 0 79 -4,-1.2 4,-1.3 1,-0.2 3,-1.2 0.963 99.9 44.1 -56.7 -56.9 -25.0 -15.2 -1.7 39 39 A E H 3X S+ 0 0 118 -4,-1.2 4,-1.3 -3,-0.3 -1,-0.2 0.814 106.8 63.3 -58.9 -30.7 -27.9 -16.4 0.4 40 40 A L H 3X S+ 0 0 80 -4,-1.2 4,-1.6 1,-0.2 -1,-0.3 0.817 99.7 54.3 -64.1 -30.8 -26.5 -14.3 3.3 41 41 A L H << S+ 0 0 12 -3,-1.2 7,-0.3 -4,-1.2 3,-0.2 0.954 105.6 49.1 -68.3 -51.7 -27.1 -11.2 1.1 42 42 A K H < S+ 0 0 142 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.775 113.9 49.5 -59.1 -26.3 -30.8 -11.8 0.5 43 43 A T H < S+ 0 0 104 -4,-1.3 -1,-0.2 -5,-0.2 -2,-0.2 0.818 114.3 47.8 -82.1 -33.5 -31.1 -12.4 4.3 44 44 A N < - 0 0 74 -4,-1.6 0, 0.0 -3,-0.2 0, 0.0 -0.472 56.5-168.7-101.8 175.2 -29.3 -9.2 5.2 45 45 A K S > S+ 0 0 155 -2,-0.2 4,-2.7 3,-0.1 5,-0.3 0.599 83.1 52.8-129.1 -49.8 -29.6 -5.6 4.0 46 46 A K H > S+ 0 0 189 1,-0.2 4,-1.8 2,-0.2 6,-0.1 0.881 116.6 42.9 -59.9 -39.4 -26.7 -3.5 5.3 47 47 A L H > S+ 0 0 70 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.808 113.2 52.8 -76.5 -31.0 -24.3 -6.1 3.8 48 48 A A H >>S+ 0 0 29 -7,-0.3 5,-0.8 1,-0.2 4,-0.8 0.864 116.8 37.5 -72.1 -37.3 -26.3 -6.4 0.6 49 49 A K H <5S+ 0 0 145 -4,-2.7 -2,-0.2 3,-0.2 -1,-0.2 0.795 117.4 52.9 -83.3 -31.3 -26.3 -2.6 0.0 50 50 A M H <5S- 0 0 86 -4,-1.8 -3,-0.2 -5,-0.3 -2,-0.2 0.998 142.2 -19.3 -66.7 -67.9 -22.7 -2.2 1.3 51 51 A I H <5S+ 0 0 0 -4,-1.7 4,-0.5 -5,-0.1 -3,-0.2 -0.094 109.0 103.0-134.9 34.8 -20.9 -4.7 -0.8 52 52 A G T >X5S+ 0 0 3 -4,-0.8 4,-1.6 2,-0.2 3,-0.9 0.885 75.3 56.6 -84.8 -42.9 -23.7 -7.0 -2.0 53 53 A H H 3>> - 0 0 59 -2,-1.4 3,-2.0 -3,-0.2 4,-1.0 -0.968 59.9-148.9-131.1 117.4 -16.2 -5.5 -15.0 62 62 A P H 3> S+ 0 0 96 0, 0.0 4,-1.2 0, 0.0 -1,-0.1 0.777 101.6 62.0 -51.6 -27.8 -14.2 -2.2 -14.7 63 63 A H H 3> S+ 0 0 129 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.815 95.0 61.5 -69.1 -30.9 -17.0 -1.1 -12.3 64 64 A K H X> S+ 0 0 8 -3,-2.0 4,-2.6 1,-0.2 3,-0.6 0.964 104.6 44.8 -59.8 -55.3 -16.1 -4.0 -9.9 65 65 A E H 3X S+ 0 0 56 -4,-1.0 4,-2.6 1,-0.3 -1,-0.2 0.817 112.4 54.6 -59.2 -31.1 -12.5 -2.8 -9.3 66 66 A E H 3X S+ 0 0 134 -4,-1.2 4,-0.7 2,-0.2 -1,-0.3 0.807 111.5 43.8 -72.7 -30.3 -13.9 0.7 -8.9 67 67 A E H + 0 0 137 -2,-0.7 3,-0.8 -79,-0.0 -2,-0.1 -0.935 42.7 2.0-134.0 156.9 -12.2 18.3 2.7 82 82 A R T 3 S- 0 0 207 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 0.028 98.3 -66.8 59.9-174.7 -10.8 21.2 4.7 83 83 A K T 3 S+ 0 0 209 -3,-0.0 -1,-0.2 2,-0.0 2,-0.1 -0.059 98.4 114.9 -99.7 31.5 -7.1 22.0 4.9 84 84 A D < + 0 0 124 -3,-0.8 -3,-0.0 1,-0.1 0, 0.0 -0.353 31.2 166.0 -93.7 176.6 -6.3 18.8 6.8 85 85 A G + 0 0 49 -2,-0.1 2,-0.8 -5,-0.0 3,-0.2 0.202 26.7 131.4 176.7 38.4 -4.3 15.8 5.8 86 86 A K + 0 0 199 1,-0.1 3,-0.1 3,-0.0 -2,-0.0 -0.771 51.7 74.8-107.6 87.1 -3.4 13.6 8.8 87 87 A H S S+ 0 0 91 -2,-0.8 2,-0.4 1,-0.4 -1,-0.1 0.331 87.3 44.7-155.0 -46.4 -4.3 10.0 7.8 88 88 A L + 0 0 49 -3,-0.2 -1,-0.4 1,-0.1 -11,-0.0 -0.947 45.2 150.9-117.8 133.5 -1.7 8.6 5.4 89 89 A T S S- 0 0 107 -2,-0.4 -1,-0.1 -3,-0.1 -3,-0.0 0.644 76.2 -64.1-123.9 -44.4 2.1 9.0 5.8 90 90 A L S > S+ 0 0 100 -80,-0.0 4,-0.8 0, 0.0 -2,-0.0 0.086 125.8 54.1-176.1 -49.9 3.7 5.9 4.1 91 91 A H H >> S+ 0 0 62 1,-0.2 4,-2.0 2,-0.2 3,-0.9 0.938 109.4 49.1 -69.5 -48.4 2.7 2.7 5.9 92 92 A E H 3> S+ 0 0 52 1,-0.3 4,-1.6 2,-0.2 -16,-0.3 0.820 104.0 62.5 -60.7 -31.5 -1.1 3.3 5.7 93 93 A L H 3> S+ 0 0 30 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.835 107.7 42.7 -63.5 -33.1 -0.6 4.1 2.0 94 94 A T H S+ 0 0 3 -4,-0.3 4,-2.6 -5,-0.2 7,-0.2 0.872 102.4 59.1 -73.3 -38.5 -6.6 -9.0 -2.0 103 103 A C H < S+ 0 0 1 -4,-2.3 7,-0.2 2,-0.2 -1,-0.2 0.819 100.6 60.2 -59.9 -31.1 -10.3 -8.1 -2.1 104 104 A V H < S+ 0 0 38 -4,-0.8 3,-0.3 1,-0.2 -1,-0.2 0.990 113.4 31.4 -60.4 -64.5 -10.2 -8.5 -5.9 105 105 A K H < S+ 0 0 138 -4,-1.1 2,-0.6 1,-0.3 -2,-0.2 0.831 129.8 43.9 -64.0 -32.5 -9.2 -12.2 -5.9 106 106 A D >< + 0 0 20 -4,-2.6 3,-0.8 -5,-0.2 4,-0.4 -0.807 61.5 173.8-118.7 89.8 -11.1 -12.7 -2.7 107 107 A N G > S+ 0 0 21 -2,-0.6 3,-0.8 -3,-0.3 4,-0.3 0.766 82.1 61.5 -63.9 -25.2 -14.5 -10.9 -2.8 108 108 A A G >> S+ 0 0 11 1,-0.2 3,-1.8 2,-0.2 4,-1.3 0.807 88.0 70.3 -71.2 -30.1 -15.3 -12.6 0.5 109 109 A L G <4 S+ 0 0 2 -3,-0.8 7,-0.3 1,-0.3 -1,-0.2 0.763 82.3 75.1 -58.2 -24.9 -12.4 -10.8 2.2 110 110 A L G <4 S+ 0 0 22 -3,-0.8 -1,-0.3 -4,-0.4 -2,-0.2 0.840 101.3 40.4 -56.7 -34.3 -14.4 -7.6 1.8 111 111 A T T <4 S+ 0 0 61 -3,-1.8 2,-1.0 -4,-0.3 -1,-0.2 0.861 101.9 76.3 -82.3 -39.3 -16.6 -8.7 4.7 112 112 A R X + 0 0 146 -4,-1.3 4,-1.3 1,-0.2 -1,-0.1 -0.638 52.2 166.6 -78.4 101.9 -13.7 -10.1 6.8 113 113 A R H > S+ 0 0 176 -2,-1.0 4,-2.6 2,-0.2 -1,-0.2 0.901 74.8 50.4 -81.3 -45.4 -12.1 -7.0 8.3 114 114 A D H > S+ 0 0 134 2,-0.2 4,-1.3 1,-0.2 5,-0.2 0.929 114.4 44.7 -58.7 -48.2 -10.0 -8.8 10.9 115 115 A E H >> S+ 0 0 72 1,-0.2 4,-1.8 2,-0.2 3,-0.6 0.950 117.5 43.4 -62.0 -51.4 -8.6 -11.3 8.4 116 116 A L H 3X S+ 0 0 13 -4,-1.3 4,-2.4 -7,-0.3 5,-0.2 0.812 109.2 59.8 -64.7 -30.3 -7.9 -8.6 5.7 117 117 A F H 3X S+ 0 0 62 -4,-2.6 4,-0.8 1,-0.2 -1,-0.2 0.804 109.9 42.0 -68.0 -29.5 -6.5 -6.4 8.5 118 118 A A H