==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-APR-07 2YUL . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-17; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.ABE,N.TOCHIO,K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA, . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7122.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 46.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 142.0 17.9 -7.3 -7.9 2 2 A S + 0 0 103 2,-0.1 2,-0.7 1,-0.0 4,-0.1 -0.818 360.0 168.4-102.8 97.3 15.1 -5.9 -10.1 3 3 A S + 0 0 126 -2,-0.9 2,-0.3 2,-0.1 -1,-0.0 -0.774 59.5 3.6-111.3 86.7 13.8 -8.7 -12.3 4 4 A G S S+ 0 0 69 -2,-0.7 2,-0.2 0, 0.0 -2,-0.1 -0.989 108.2 0.0 148.4-136.4 10.5 -7.5 -13.9 5 5 A S - 0 0 117 -2,-0.3 2,-0.3 1,-0.0 -2,-0.1 -0.597 57.6-168.9 -91.8 153.4 8.6 -4.2 -13.9 6 6 A S + 0 0 100 -2,-0.2 -4,-0.0 -4,-0.1 -1,-0.0 -0.859 42.4 33.1-135.4 169.5 9.6 -1.1 -12.0 7 7 A G S S- 0 0 72 -2,-0.3 2,-0.3 2,-0.0 -1,-0.0 0.462 86.4 -80.0 60.9 148.8 8.2 2.3 -11.0 8 8 A I - 0 0 127 1,-0.1 -2,-0.0 -3,-0.0 -1,-0.0 -0.617 33.9-170.6 -84.8 140.8 4.5 2.9 -10.2 9 9 A R S S+ 0 0 209 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.882 71.3 23.5 -93.8 -51.6 2.0 3.3 -13.0 10 10 A R S S- 0 0 182 1,-0.1 -1,-0.3 0, 0.0 55,-0.1 -0.871 85.1-105.3-119.4 152.2 -1.1 4.4 -11.2 11 11 A P - 0 0 37 0, 0.0 2,-0.3 0, 0.0 54,-0.1 -0.229 31.5-142.8 -69.7 161.0 -1.6 6.1 -7.8 12 12 A M - 0 0 36 49,-0.2 53,-0.3 4,-0.0 52,-0.2 -0.876 4.9-132.7-126.3 159.0 -2.9 4.3 -4.7 13 13 A N > - 0 0 82 -2,-0.3 4,-2.8 51,-0.1 5,-0.2 -0.352 41.2 -86.3-100.1-177.2 -5.2 5.2 -1.8 14 14 A A H > S+ 0 0 23 1,-0.2 4,-1.7 2,-0.2 5,-0.2 0.888 130.2 45.7 -56.7 -41.3 -4.8 4.8 2.0 15 15 A F H > S+ 0 0 49 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.938 112.4 49.8 -68.3 -48.6 -6.3 1.3 1.7 16 16 A M H > S+ 0 0 77 2,-0.2 4,-2.9 3,-0.2 -2,-0.2 0.955 112.5 47.4 -55.0 -55.2 -4.1 0.2 -1.3 17 17 A V H >X S+ 0 0 2 -4,-2.8 4,-0.8 1,-0.2 3,-0.7 0.972 112.0 46.3 -50.1 -70.7 -0.9 1.4 0.4 18 18 A W H >X S+ 0 0 15 -4,-1.7 4,-1.2 1,-0.3 3,-0.5 0.808 115.7 51.1 -43.2 -34.0 -1.4 -0.2 3.8 19 19 A A H 3X>S+ 0 0 5 -4,-1.8 4,-2.3 1,-0.2 5,-0.6 0.904 87.2 78.9 -72.6 -43.0 -2.4 -3.3 1.8 20 20 A K H <<5S+ 0 0 119 -4,-2.9 4,-0.4 -3,-0.7 -1,-0.2 0.776 107.7 34.4 -34.7 -33.7 0.7 -3.2 -0.4 21 21 A D H X5S+ 0 0 47 -4,-1.2 3,-2.0 -5,-0.2 4,-1.2 0.974 104.8 59.6 -66.3 -56.8 -0.6 -6.9 3.9 23 23 A R H >X5S+ 0 0 107 -4,-2.3 4,-2.5 1,-0.3 3,-1.0 0.862 96.8 64.0 -38.2 -48.6 -1.6 -8.3 0.5 24 24 A K H 3>< + 0 0 53 -4,-2.9 3,-0.7 -5,-0.1 -1,-0.3 -0.729 62.0 169.3-131.7 84.0 -3.1 -18.3 -0.5 31 31 A P T 3 S+ 0 0 111 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.548 86.6 48.5 -69.8 -6.5 -1.0 -19.3 -3.5 32 32 A D T 3 S+ 0 0 154 -3,-0.1 2,-0.2 2,-0.1 -5,-0.1 0.561 97.5 84.6-107.1 -15.8 -4.3 -20.3 -5.2 33 33 A L < - 0 0 58 -3,-0.7 2,-0.2 -6,-0.2 -3,-0.1 -0.532 65.2-147.5 -88.1 155.9 -6.3 -17.2 -4.3 34 34 A H >> - 0 0 111 -2,-0.2 4,-2.5 1,-0.1 3,-2.1 -0.712 36.1 -84.5-118.2 170.0 -6.2 -14.0 -6.4 35 35 A N H 3> S+ 0 0 84 1,-0.3 4,-2.8 2,-0.3 5,-0.3 0.887 126.6 56.5 -34.5 -69.9 -6.6 -10.3 -5.6 36 36 A A H 3> S+ 0 0 63 1,-0.3 4,-0.9 2,-0.2 -1,-0.3 0.798 115.2 41.5 -34.3 -38.9 -10.4 -10.4 -5.6 37 37 A E H <4 S+ 0 0 82 -3,-2.1 4,-0.5 2,-0.2 -1,-0.3 0.898 113.9 50.6 -79.1 -43.9 -10.0 -13.1 -3.0 38 38 A L H >X S+ 0 0 4 -4,-2.5 3,-2.6 -3,-0.3 4,-1.8 0.941 102.6 61.0 -59.3 -50.0 -7.1 -11.3 -1.1 39 39 A S H 3X S+ 0 0 53 -4,-2.8 4,-3.1 1,-0.3 5,-0.3 0.911 89.9 68.3 -42.3 -56.5 -9.0 -8.0 -0.9 40 40 A K H 3X S+ 0 0 160 -4,-0.9 4,-1.0 -5,-0.3 -1,-0.3 0.780 111.2 36.3 -35.2 -33.9 -11.8 -9.7 1.1 41 41 A M H <> S+ 0 0 40 -3,-2.6 4,-1.8 -4,-0.5 -1,-0.3 0.826 112.0 57.3 -90.3 -38.0 -9.1 -10.0 3.8 42 42 A L H X S+ 0 0 11 -4,-1.8 4,-0.9 1,-0.2 -2,-0.2 0.787 110.2 48.0 -63.7 -27.2 -7.4 -6.7 3.1 43 43 A G H X S+ 0 0 19 -4,-3.1 4,-2.2 -5,-0.2 5,-0.5 0.955 107.2 50.4 -78.3 -54.2 -10.7 -4.9 3.7 44 44 A K H X S+ 0 0 136 -4,-1.0 4,-0.8 -5,-0.3 -2,-0.2 0.855 116.2 45.1 -52.1 -37.5 -11.8 -6.5 6.9 45 45 A S H X S+ 0 0 42 -4,-1.8 4,-1.1 2,-0.1 -1,-0.3 0.789 115.9 48.4 -77.4 -29.1 -8.4 -5.7 8.3 46 46 A W H >< S+ 0 0 30 -4,-0.9 3,-1.4 -3,-0.3 -2,-0.2 0.991 108.7 46.8 -73.4 -69.6 -8.5 -2.2 6.9 47 47 A K H 3< S+ 0 0 168 -4,-2.2 -1,-0.2 1,-0.3 -3,-0.2 0.804 110.6 59.3 -42.6 -33.5 -11.9 -1.0 8.0 48 48 A A H 3< S+ 0 0 76 -4,-0.8 -1,-0.3 -5,-0.5 -2,-0.2 0.915 88.1 89.9 -64.2 -44.7 -11.0 -2.4 11.4 49 49 A L S << S- 0 0 35 -3,-1.4 2,-0.2 -4,-1.1 -3,-0.0 -0.003 76.0-126.6 -49.4 159.3 -7.9 -0.1 11.7 50 50 A T > - 0 0 85 1,-0.1 4,-1.9 0, 0.0 3,-0.4 -0.513 26.3 -94.1-105.9 175.9 -8.4 3.3 13.3 51 51 A L H >> S+ 0 0 107 1,-0.3 4,-1.7 2,-0.2 3,-0.9 0.961 125.2 51.6 -52.7 -59.2 -7.6 6.8 12.3 52 52 A A H 34 S+ 0 0 72 1,-0.3 -1,-0.3 2,-0.2 -3,-0.0 0.811 111.1 51.2 -48.8 -32.5 -4.2 6.9 14.0 53 53 A E H 34 S+ 0 0 95 -3,-0.4 4,-0.4 1,-0.2 -1,-0.3 0.844 113.0 42.9 -75.0 -35.2 -3.5 3.6 12.2 54 54 A K H S+ 0 0 57 -4,-0.4 4,-0.9 2,-0.1 -2,-0.2 0.515 115.3 51.7 -94.7 -8.2 -1.1 5.2 5.4 58 58 A V H X S+ 0 0 48 -4,-1.7 4,-1.1 -3,-0.2 -3,-0.2 0.783 106.7 49.6 -95.8 -34.8 -3.3 8.2 4.7 59 59 A E H < S+ 0 0 101 -4,-2.1 4,-0.2 -5,-0.3 -2,-0.1 0.573 115.2 47.7 -80.1 -9.7 -0.5 10.8 4.6 60 60 A E H >> S+ 0 0 73 -4,-0.2 4,-1.6 -5,-0.2 3,-1.0 0.875 108.6 47.9 -94.8 -51.6 1.4 8.6 2.1 61 61 A A H 3X S+ 0 0 4 -4,-0.9 4,-2.3 1,-0.3 -49,-0.2 0.824 105.7 62.3 -59.5 -32.1 -1.4 7.7 -0.4 62 62 A E H 3X S+ 0 0 110 -4,-1.1 4,-1.7 1,-0.2 -1,-0.3 0.820 104.4 47.8 -63.6 -31.3 -2.3 11.3 -0.5 63 63 A R H <> S+ 0 0 167 -3,-1.0 4,-1.1 -4,-0.2 -1,-0.2 0.859 110.3 50.7 -77.5 -37.6 1.1 12.1 -1.9 64 64 A L H X S+ 0 0 37 -4,-1.6 4,-1.6 2,-0.2 -2,-0.2 0.888 112.0 47.9 -67.3 -40.0 1.0 9.3 -4.5 65 65 A R H X S+ 0 0 154 -4,-2.3 4,-1.1 -53,-0.3 -2,-0.2 0.977 106.6 53.7 -64.9 -57.7 -2.4 10.5 -5.8 66 66 A V H X S+ 0 0 72 -4,-1.7 4,-1.4 1,-0.2 3,-0.2 0.802 107.1 57.7 -47.4 -31.7 -1.6 14.2 -6.1 67 67 A Q H >X S+ 0 0 96 -4,-1.1 4,-1.3 2,-0.2 3,-1.2 0.987 95.6 57.3 -64.4 -61.4 1.4 13.0 -8.2 68 68 A H H 3< S+ 0 0 77 -4,-1.6 4,-0.4 1,-0.3 -1,-0.2 0.742 109.3 52.3 -42.2 -24.6 -0.6 11.1 -10.9 69 69 A M H >< S+ 0 0 37 -4,-1.1 3,-1.6 -3,-0.2 -1,-0.3 0.879 94.4 66.4 -81.2 -41.6 -2.3 14.5 -11.3 70 70 A Q H << S+ 0 0 134 -4,-1.4 -2,-0.2 -3,-1.2 -1,-0.2 0.848 95.7 59.9 -47.6 -38.3 0.9 16.5 -11.8 71 71 A D T 3< S+ 0 0 126 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.857 121.8 19.6 -60.1 -36.1 1.4 14.5 -15.0 72 72 A H < - 0 0 64 -3,-1.6 -1,-0.3 -4,-0.4 0, 0.0 -0.963 62.2-152.2-142.4 121.6 -1.9 15.9 -16.3 73 73 A P S > S+ 0 0 91 0, 0.0 2,-2.3 0, 0.0 3,-0.6 0.415 70.7 110.7 -69.7 4.0 -3.8 19.0 -15.0 74 74 A N T 3 + 0 0 143 1,-0.2 3,-0.0 -5,-0.2 -3,-0.0 -0.210 63.0 71.6 -75.8 49.8 -6.9 17.3 -16.2 75 75 A Y T 3 S- 0 0 118 -2,-2.3 -1,-0.2 -6,-0.1 2,-0.2 0.617 111.3 -27.0-127.3 -52.5 -8.0 16.8 -12.6 76 76 A K < + 0 0 162 -3,-0.6 2,-0.3 -7,-0.1 -2,-0.1 -0.712 60.3 160.9-174.9 119.0 -9.0 20.2 -11.1 77 77 A S + 0 0 110 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.971 31.1 93.0-148.4 129.0 -8.0 23.8 -11.9 78 78 A G - 0 0 65 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 0.200 43.1-162.1 147.4 83.5 -9.6 27.1 -11.1 79 79 A P - 0 0 126 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.075 32.0 -87.9 -69.8-173.9 -8.8 29.1 -8.0 80 80 A S + 0 0 126 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.764 46.8 165.4-103.1 147.9 -11.0 31.9 -6.5 81 81 A S 0 0 117 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.989 360.0 360.0-158.1 151.7 -10.8 35.6 -7.4 82 82 A G 0 0 127 -2,-0.3 -1,-0.0 0, 0.0 0, 0.0 0.290 360.0 360.0 -99.2 360.0 -12.9 38.8 -7.0