==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 06-APR-07 2YUR . COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.ABE,K.MIYAMOTO,N.TOCHIO,T.TOMIZAWA,S.KOSHIBA,T.HARADA, . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5577.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 41.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 115 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-100.3 13.0 -42.9 -0.1 2 2 A S + 0 0 142 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.877 360.0 109.4 49.1 42.2 9.5 -44.3 -0.8 3 3 A S S S- 0 0 111 1,-0.2 2,-0.2 0, 0.0 -1,-0.1 0.745 70.9-128.2-111.2 -44.8 8.1 -41.8 1.6 4 4 A G S S+ 0 0 42 1,-0.1 -1,-0.2 0, 0.0 3,-0.1 -0.644 74.1 94.2 121.0-179.2 6.2 -39.3 -0.6 5 5 A S + 0 0 128 1,-0.2 2,-1.2 -2,-0.2 -1,-0.1 0.895 51.0 169.8 59.6 41.9 6.0 -35.6 -1.1 6 6 A S + 0 0 122 2,-0.0 -1,-0.2 -3,-0.0 2,-0.2 -0.705 39.2 69.9 -89.5 92.6 8.6 -35.8 -4.0 7 7 A G S S- 0 0 56 -2,-1.2 2,-0.3 -3,-0.1 0, 0.0 -0.527 71.1-120.2 160.7 130.6 8.5 -32.4 -5.6 8 8 A E - 0 0 185 -2,-0.2 2,-0.3 1,-0.0 -2,-0.0 -0.661 29.2-162.2 -87.4 138.7 9.5 -28.8 -4.9 9 9 A D - 0 0 142 -2,-0.3 -2,-0.0 0, 0.0 -1,-0.0 -0.786 17.8-116.7-117.8 161.9 6.9 -26.1 -4.9 10 10 A D - 0 0 135 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.856 27.8-133.1-103.2 129.4 7.0 -22.3 -5.1 11 11 A P - 0 0 108 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.083 58.6 -37.6 -69.7 173.7 5.8 -20.1 -2.2 12 12 A I S S- 0 0 99 1,-0.1 12,-0.0 2,-0.1 5,-0.0 0.015 74.5-120.2 -35.0 124.9 3.5 -17.1 -2.5 13 13 A P > - 0 0 52 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 -0.224 14.7-114.3 -69.8 161.5 4.4 -15.3 -5.7 14 14 A D G > S+ 0 0 112 1,-0.3 3,-2.5 2,-0.1 -2,-0.1 0.920 110.9 72.0 -62.5 -45.5 5.6 -11.7 -5.8 15 15 A E G 3 S+ 0 0 147 1,-0.3 -1,-0.3 0, 0.0 -3,-0.0 0.745 96.4 56.1 -42.3 -25.1 2.5 -10.5 -7.7 16 16 A L G < S+ 0 0 97 -3,-1.1 9,-0.4 2,-0.1 -1,-0.3 -0.091 100.3 79.4-100.9 33.5 0.8 -11.1 -4.4 17 17 A L S < S- 0 0 39 -3,-2.5 20,-0.2 7,-0.1 7,-0.1 -0.943 80.0-106.1-138.1 159.0 3.1 -8.8 -2.5 18 18 A C - 0 0 0 5,-0.5 4,-0.3 -2,-0.3 20,-0.2 -0.439 22.2-127.1 -82.8 158.4 3.5 -5.1 -1.9 19 19 A L S S+ 0 0 89 18,-1.2 -1,-0.1 -2,-0.1 19,-0.1 -0.162 99.4 50.8 -96.9 38.8 6.3 -2.9 -3.5 20 20 A I S S+ 0 0 78 3,-0.1 -1,-0.1 0, 0.0 18,-0.1 0.499 127.7 1.7-133.0 -69.8 7.4 -1.5 -0.2 21 21 A C S S- 0 0 66 2,-0.2 -2,-0.1 3,-0.0 3,-0.1 0.438 87.9-127.6-105.6 -4.7 8.1 -4.1 2.6 22 22 A K + 0 0 125 -4,-0.3 2,-0.4 1,-0.2 -3,-0.1 0.937 61.6 137.6 56.6 50.5 7.3 -7.1 0.4 23 23 A D - 0 0 99 1,-0.0 -5,-0.5 0, 0.0 -1,-0.2 -0.978 65.4 -83.0-130.2 141.7 4.9 -8.5 3.0 24 24 A I - 0 0 102 -2,-0.4 2,-1.3 1,-0.1 -7,-0.1 -0.062 42.0-130.0 -40.3 129.4 1.5 -10.1 2.5 25 25 A M > - 0 0 24 -9,-0.4 3,-1.0 1,-0.2 -1,-0.1 -0.683 18.6-167.9 -90.3 87.2 -1.2 -7.4 2.2 26 26 A T T 3 S+ 0 0 129 -2,-1.3 2,-0.3 1,-0.3 -1,-0.2 0.819 90.3 27.3 -41.3 -36.9 -3.8 -8.5 4.7 27 27 A D T 3 S- 0 0 58 -3,-0.1 -1,-0.3 11,-0.1 11,-0.1 -0.662 89.7-147.0-131.7 77.4 -6.0 -5.9 3.1 28 28 A A < - 0 0 53 -3,-1.0 2,-0.4 -2,-0.3 11,-0.1 -0.145 18.6-168.1 -45.1 127.5 -5.0 -5.3 -0.5 29 29 A V E -A 38 0A 1 9,-0.8 9,-0.8 39,-0.1 2,-0.6 -0.981 11.6-155.0-129.6 122.8 -5.6 -1.7 -1.4 30 30 A V E -A 37 0A 91 -2,-0.4 7,-0.1 7,-0.1 39,-0.1 -0.854 16.0-140.6 -99.8 116.3 -5.4 -0.3 -5.0 31 31 A I - 0 0 2 5,-0.8 3,-0.1 -2,-0.6 5,-0.0 -0.529 0.3-149.2 -76.5 137.2 -4.6 3.4 -5.2 32 32 A P S S+ 0 0 73 0, 0.0 -1,-0.1 0, 0.0 31,-0.0 0.941 88.3 73.2 -69.8 -49.9 -6.5 5.5 -7.8 33 33 A C S S- 0 0 45 1,-0.1 26,-0.0 31,-0.1 -2,-0.0 0.831 136.1 -29.3 -30.9 -52.6 -3.8 8.0 -8.5 34 34 A C S S- 0 0 57 -3,-0.1 -1,-0.1 2,-0.1 -4,-0.0 0.529 91.9-106.6-135.0 -55.7 -2.0 5.3 -10.4 35 35 A G + 0 0 29 1,-0.1 2,-0.3 -6,-0.1 -5,-0.1 0.413 47.8 150.4 117.2 106.3 -2.8 1.8 -9.0 36 36 A N - 0 0 38 -7,-0.2 -5,-0.8 2,-0.1 2,-0.6 -0.986 43.9-104.3-157.8 160.1 -0.5 -0.4 -6.9 37 37 A S E +A 30 0A 30 -2,-0.3 -18,-1.2 -20,-0.2 2,-0.3 -0.806 46.8 157.6 -94.9 122.4 -0.6 -3.1 -4.2 38 38 A Y E -A 29 0A 8 -9,-0.8 -9,-0.8 -2,-0.6 -11,-0.1 -0.998 45.3 -96.0-145.1 146.3 0.3 -2.0 -0.7 39 39 A C >> - 0 0 8 -2,-0.3 4,-2.1 1,-0.1 5,-0.6 -0.314 43.1-107.7 -61.0 139.4 -0.3 -3.2 2.8 40 40 A D T 45S+ 0 0 47 1,-0.2 4,-0.3 2,-0.2 -1,-0.1 0.789 125.2 31.6 -35.6 -35.8 -3.2 -1.4 4.6 41 41 A E T >>5S+ 0 0 122 2,-0.2 4,-2.9 3,-0.1 3,-0.5 0.889 108.8 65.8 -90.9 -50.2 -0.5 0.3 6.6 42 42 A C H 3>5S+ 0 0 13 1,-0.3 4,-2.4 2,-0.2 -2,-0.2 0.882 110.6 38.8 -37.0 -56.8 2.3 0.4 4.0 43 43 A I H 3X5S+ 0 0 5 -4,-2.1 4,-1.5 2,-0.2 -1,-0.3 0.816 115.3 56.4 -66.7 -30.9 0.2 2.8 1.9 44 44 A R H <>X S+ 0 0 72 -4,-2.9 4,-2.8 2,-0.2 3,-1.7 0.951 109.0 65.1 -61.8 -51.5 2.5 5.4 6.5 46 46 A A H 3X S+ 0 0 10 -4,-2.4 4,-1.5 -5,-0.4 8,-0.2 0.886 99.7 50.9 -35.1 -64.7 4.0 6.1 3.1 47 47 A L H 3< S+ 0 0 8 -4,-1.5 7,-0.5 1,-0.2 -1,-0.3 0.828 115.6 45.5 -45.9 -35.6 1.7 9.1 2.5 48 48 A L H << S+ 0 0 107 -3,-1.7 -2,-0.2 -4,-0.9 -1,-0.2 0.948 100.3 66.0 -74.8 -51.4 2.8 10.3 6.0 49 49 A E H < S+ 0 0 154 -4,-2.8 -2,-0.2 4,-0.0 -3,-0.1 0.875 95.3 65.7 -34.1 -63.2 6.6 9.6 5.5 50 50 A S S < S- 0 0 55 -4,-1.5 4,-0.1 2,-0.1 5,-0.0 -0.253 108.5 -97.9 -64.1 152.0 6.8 12.3 2.8 51 51 A D S S+ 0 0 166 2,-0.1 2,-0.2 3,-0.0 -1,-0.1 0.852 105.3 1.9 -35.0 -50.7 6.2 15.9 3.9 52 52 A E S S- 0 0 140 2,-0.0 2,-2.1 0, 0.0 -2,-0.1 -0.791 106.9 -60.5-134.0 176.4 2.6 15.6 2.6 53 53 A H S S+ 0 0 63 -2,-0.2 9,-2.4 1,-0.1 10,-0.6 -0.364 71.5 152.4 -61.6 82.3 0.3 12.9 1.1 54 54 A T - 0 0 47 -2,-2.1 -4,-0.1 -7,-0.5 7,-0.1 -0.859 45.4-126.8-121.7 96.8 2.5 12.3 -2.0 55 55 A C - 0 0 3 -2,-0.6 5,-0.4 3,-0.2 -12,-0.0 0.007 12.1-139.5 -39.0 138.0 2.1 8.9 -3.5 56 56 A P S S+ 0 0 75 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.937 98.5 47.7 -69.7 -49.1 5.5 7.2 -3.9 57 57 A T S S+ 0 0 71 1,-0.3 2,-0.5 2,-0.0 -2,-0.1 0.966 129.3 16.2 -57.3 -57.2 4.8 5.6 -7.3 58 58 A C S S- 0 0 35 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 -0.960 90.2-112.6-126.1 115.4 3.4 8.7 -8.8 59 59 A H + 0 0 161 -2,-0.5 2,-0.2 -3,-0.2 -5,-0.1 -0.196 54.0 170.7 -45.7 100.0 4.0 12.1 -7.3 60 60 A Q - 0 0 51 -5,-0.4 2,-0.4 -2,-0.3 3,-0.1 -0.634 33.9-132.2-112.5 171.8 0.4 12.9 -6.2 61 61 A N S S- 0 0 128 -2,-0.2 -7,-0.2 1,-0.1 -2,-0.0 -0.843 84.4 -19.2-130.3 95.8 -1.2 15.6 -4.1 62 62 A D S S- 0 0 123 -9,-2.4 2,-0.3 -2,-0.4 -1,-0.1 0.961 77.3-152.4 74.3 55.0 -3.7 14.4 -1.5 63 63 A V - 0 0 2 -10,-0.6 -1,-0.2 1,-0.2 -16,-0.0 -0.439 32.8 -98.2 -63.3 118.2 -4.4 11.0 -3.0 64 64 A S > - 0 0 70 -2,-0.3 4,-0.6 1,-0.2 -1,-0.2 -0.102 40.1-169.8 -40.8 101.4 -7.9 9.9 -1.9 65 65 A P T 4 S+ 0 0 48 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.759 85.0 49.7 -69.8 -25.6 -7.0 7.7 1.1 66 66 A D T > S+ 0 0 119 1,-0.2 4,-0.5 8,-0.1 8,-0.2 0.844 90.5 76.6 -81.5 -36.9 -10.6 6.5 1.3 67 67 A A T 4 S+ 0 0 61 2,-0.1 -1,-0.2 0, 0.0 -37,-0.1 0.816 74.5 108.1 -42.2 -35.9 -10.9 5.7 -2.4 68 68 A L T < S- 0 0 18 -4,-0.6 2,-2.3 -3,-0.2 6,-0.1 0.061 94.8 -98.3 -42.0 155.6 -8.9 2.6 -1.6 69 69 A S T 4 S+ 0 0 74 -39,-0.1 -1,-0.2 1,-0.1 -2,-0.1 -0.206 91.2 112.7 -76.0 49.4 -10.7 -0.8 -1.6 70 70 A G X + 0 0 8 -2,-2.3 4,-1.8 -4,-0.5 3,-0.3 -0.842 40.0 178.4-129.8 97.5 -11.1 -0.6 2.1 71 71 A P T 4 S+ 0 0 127 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.591 73.2 83.6 -69.8 -10.1 -14.7 -0.1 3.5 72 72 A S T 4 S- 0 0 103 2,-0.6 -3,-0.0 1,-0.1 -2,-0.0 -0.158 127.2 -83.6 -87.1 41.0 -13.2 -0.3 7.0 73 73 A S T 4 0 0 109 -2,-0.5 -1,-0.1 -3,-0.3 -7,-0.0 0.894 360.0 360.0 60.2 41.4 -12.3 3.4 6.8 74 74 A G < 0 0 13 -4,-1.8 -2,-0.6 -8,-0.2 -8,-0.1 -0.765 360.0 360.0 131.9 360.0 -9.1 2.6 5.0