==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-05 1YWX . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S24E; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS; . AUTHOR C.S.YANG,T.ACTON,Y.SHEN,L.MA,G.LIU,R.XIAO,G.T.MONTELIONE, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7673.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 28.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 95 0, 0.0 2,-0.7 0, 0.0 24,-0.2 0.000 360.0 360.0 360.0 167.7 -10.6 -11.4 -8.1 2 2 A D E +A 24 0A 102 22,-1.9 22,-1.6 2,-0.0 2,-0.3 -0.892 360.0 174.0-112.5 101.2 -12.6 -12.8 -5.2 3 3 A I E -A 23 0A 37 -2,-0.7 2,-0.4 20,-0.2 20,-0.2 -0.824 12.4-163.0-108.2 146.8 -12.3 -10.6 -2.1 4 4 A S E -A 22 0A 74 18,-2.3 18,-2.9 -2,-0.3 2,-0.4 -0.995 15.9-133.3-133.7 127.6 -14.2 -10.9 1.1 5 5 A I E +A 21 0A 70 -2,-0.4 16,-0.3 16,-0.3 3,-0.1 -0.630 21.3 178.9 -80.6 132.0 -14.6 -8.3 3.8 6 6 A I E - 0 0 94 14,-2.2 2,-0.3 1,-0.4 15,-0.2 0.886 64.3 -9.9 -95.1 -58.8 -14.0 -9.6 7.3 7 7 A S E -A 20 0A 62 13,-1.4 13,-1.0 2,-0.0 -1,-0.4 -0.930 51.3-144.3-140.8 162.8 -14.5 -6.5 9.5 8 8 A D E +A 19 0A 130 -2,-0.3 2,-0.3 11,-0.2 11,-0.2 -0.818 25.5 175.5-134.2 92.4 -15.0 -2.7 9.0 9 9 A R E -A 18 0A 179 9,-3.4 9,-1.4 -2,-0.4 2,-0.5 -0.744 16.5-150.5 -99.5 146.3 -13.4 -0.6 11.7 10 10 A N E -A 17 0A 105 -2,-0.3 7,-0.2 7,-0.2 3,-0.2 -0.973 7.0-168.7-120.4 126.0 -13.3 3.1 11.7 11 11 A N E > +A 16 0A 27 5,-1.8 5,-2.9 -2,-0.5 -2,-0.0 -0.839 17.4 162.4-116.6 91.6 -10.5 5.1 13.3 12 12 A P T > 5 + 0 0 73 0, 0.0 3,-2.6 0, 0.0 -1,-0.2 0.836 68.9 71.1 -75.0 -35.1 -11.5 8.8 13.5 13 13 A L T 3 5S+ 0 0 154 1,-0.3 -2,-0.1 -3,-0.2 -3,-0.0 0.935 114.7 24.5 -43.4 -63.3 -8.9 9.5 16.1 14 14 A L T 3 5S- 0 0 69 2,-0.1 -1,-0.3 66,-0.0 3,-0.1 0.031 112.0-118.6 -92.2 25.3 -6.1 9.2 13.5 15 15 A Q T < 5S+ 0 0 80 -3,-2.6 57,-0.5 1,-0.2 2,-0.2 0.813 75.3 131.4 39.4 38.2 -8.6 10.0 10.8 16 16 A R E < -A 11 0A 55 -5,-2.9 -5,-1.8 55,-0.2 2,-0.4 -0.671 55.0-131.6-114.2 169.7 -7.8 6.5 9.5 17 17 A R E -AB 10 70A 101 53,-1.6 53,-0.9 -2,-0.2 2,-0.8 -0.988 8.6-159.9-128.4 124.3 -9.8 3.6 8.4 18 18 A E E +AB 9 69A 69 -9,-1.4 -9,-3.4 -2,-0.4 2,-0.5 -0.864 23.9 160.2-106.4 100.3 -9.3 0.0 9.6 19 19 A I E -AB 8 68A 20 49,-1.4 49,-2.7 -2,-0.8 2,-0.3 -0.968 18.9-163.8-125.2 115.1 -10.9 -2.4 7.2 20 20 A K E +AB 7 67A 54 -13,-1.0 -14,-2.2 -2,-0.5 -13,-1.4 -0.755 22.2 146.2 -98.7 144.2 -9.8 -6.0 7.1 21 21 A F E -AB 5 66A 1 45,-1.9 45,-2.0 -2,-0.3 2,-0.3 -0.928 37.5-111.1-160.1 180.0 -10.5 -8.4 4.3 22 22 A T E -AB 4 65A 14 -18,-2.9 -18,-2.3 -2,-0.3 2,-0.4 -0.934 17.2-161.1-127.3 150.1 -9.3 -11.3 2.2 23 23 A V E +AB 3 64A 5 41,-4.6 41,-1.7 -2,-0.3 2,-0.4 -0.998 10.0 179.5-134.5 130.0 -8.2 -11.6 -1.4 24 24 A S E +AB 2 63A 19 -22,-1.6 -22,-1.9 -2,-0.4 2,-0.3 -0.972 5.3 165.8-131.5 145.3 -7.9 -14.8 -3.4 25 25 A F - 0 0 25 37,-1.1 2,-1.6 -2,-0.4 4,-0.0 -0.984 45.2-104.7-154.4 158.5 -6.9 -15.5 -7.0 26 26 A D S S- 0 0 131 -2,-0.3 2,-2.9 1,-0.1 3,-0.1 -0.623 86.6 -63.5 -88.0 79.0 -5.9 -18.3 -9.3 27 27 A A S S+ 0 0 74 -2,-1.6 -1,-0.1 1,-0.2 -2,-0.0 -0.314 105.9 124.3 75.8 -57.1 -2.1 -17.6 -9.4 28 28 A A - 0 0 55 -2,-2.9 -1,-0.2 1,-0.1 0, 0.0 -0.088 47.4-164.0 -38.2 112.2 -2.8 -14.2 -11.0 29 29 A T - 0 0 105 -3,-0.1 -1,-0.1 -4,-0.0 -4,-0.0 -0.913 5.9-170.0-112.9 106.4 -1.1 -11.9 -8.6 30 30 A P - 0 0 26 0, 0.0 2,-0.2 0, 0.0 3,-0.0 0.171 19.4-108.7 -74.9-162.1 -2.1 -8.2 -9.0 31 31 A S > - 0 0 58 1,-0.1 4,-2.1 0, 0.0 5,-0.1 -0.470 30.7 -92.4-119.4-169.1 -0.5 -5.2 -7.3 32 32 A I H > S+ 0 0 56 2,-0.2 4,-2.1 -2,-0.2 5,-0.1 0.970 126.2 37.0 -71.7 -57.1 -1.4 -2.7 -4.6 33 33 A K H > S+ 0 0 27 2,-0.2 4,-1.6 1,-0.2 -1,-0.1 0.895 117.5 54.1 -61.4 -41.7 -3.0 -0.1 -6.9 34 34 A D H >> S+ 0 0 53 1,-0.2 4,-1.0 2,-0.2 3,-0.7 0.941 111.0 44.1 -57.1 -50.9 -4.5 -2.9 -9.0 35 35 A V H 3X S+ 0 0 16 -4,-2.1 4,-3.1 1,-0.3 -1,-0.2 0.818 106.5 63.0 -63.3 -31.3 -6.1 -4.5 -5.9 36 36 A K H 3X S+ 0 0 16 -4,-2.1 4,-2.9 1,-0.2 -1,-0.3 0.847 93.7 64.6 -61.4 -35.0 -7.1 -1.0 -4.9 37 37 A M H X S+ 0 0 63 -4,-1.0 4,-2.7 1,-0.2 3,-0.5 0.932 119.0 57.2 -66.2 -47.5 -11.5 -3.6 -7.0 39 39 A L H 3X S+ 0 0 2 -4,-3.1 4,-4.3 1,-0.3 5,-0.4 0.837 104.3 55.4 -51.5 -35.1 -11.0 -2.8 -3.3 40 40 A V H 3X>S+ 0 0 24 -4,-2.9 4,-2.7 2,-0.2 5,-0.8 0.899 110.7 42.6 -64.9 -42.2 -12.2 0.7 -4.2 41 41 A A H <<5S+ 0 0 75 -4,-1.3 -2,-0.2 -3,-0.5 -1,-0.2 0.772 118.5 47.6 -73.8 -27.3 -15.4 -0.8 -5.7 42 42 A V H <5S+ 0 0 66 -4,-2.7 -2,-0.2 -5,-0.1 -3,-0.2 0.939 122.6 31.7 -77.1 -51.4 -15.6 -3.1 -2.7 43 43 A L H <5S- 0 0 31 -4,-4.3 -3,-0.2 -5,-0.2 -2,-0.2 0.850 97.2-146.5 -73.7 -36.1 -15.0 -0.5 -0.1 44 44 A N T <5 + 0 0 141 -4,-2.7 2,-0.2 -5,-0.4 -3,-0.2 0.987 52.6 116.4 65.7 61.6 -16.7 2.1 -2.3 45 45 A A S S+ 0 0 83 -2,-0.4 3,-1.5 1,-0.2 -1,-0.2 0.796 81.7 69.0 -74.8 -30.1 -9.5 5.6 -4.5 48 48 A Q T 3 S+ 0 0 156 1,-0.3 2,-0.7 -3,-0.1 -1,-0.2 0.952 108.5 33.6 -51.4 -58.3 -7.3 8.7 -4.6 49 49 A V T 3 S+ 0 0 25 22,-0.1 22,-0.9 23,-0.1 2,-0.4 -0.379 102.9 107.8 -96.6 52.8 -6.6 8.6 -0.9 50 50 A L E < +C 70 0A 4 -3,-1.5 2,-0.3 -2,-0.7 20,-0.2 -0.998 35.3 147.4-134.3 134.8 -6.7 4.8 -0.7 51 51 A V E -C 69 0A 10 18,-1.4 18,-1.6 -2,-0.4 2,-0.3 -0.916 39.2-104.1-153.3 175.2 -3.9 2.4 -0.2 52 52 A V E -C 68 0A 17 -2,-0.3 16,-0.2 16,-0.2 37,-0.2 -0.752 11.5-161.3-108.8 156.4 -3.0 -0.9 1.3 53 53 A D E - 0 0 47 14,-1.7 2,-0.3 1,-0.4 15,-0.2 0.861 64.1 -43.2 -98.3 -57.0 -1.1 -1.7 4.4 54 54 A T E -C 67 0A 92 13,-1.3 13,-1.9 2,-0.0 -1,-0.4 -0.973 48.8-161.4-168.2 167.6 0.0 -5.3 4.0 55 55 A L E -C 66 0A 61 -2,-0.3 2,-0.3 11,-0.2 11,-0.3 -0.928 6.6-149.5-151.6 171.3 -1.1 -8.7 2.9 56 56 A D E -C 65 0A 115 9,-2.2 9,-2.2 -2,-0.3 2,-0.2 -0.951 16.7-131.4-153.3 128.8 -0.2 -12.4 3.2 57 57 A Q E -C 64 0A 125 -2,-0.3 2,-0.3 7,-0.3 7,-0.3 -0.524 24.0-124.6 -80.8 147.1 -0.7 -15.3 0.8 58 58 A I - 0 0 57 5,-4.3 5,-0.2 -2,-0.2 -1,-0.1 -0.733 13.6-163.7 -94.2 140.6 -2.2 -18.5 2.1 59 59 A F S S+ 0 0 205 -2,-0.3 -1,-0.1 3,-0.1 5,-0.0 0.843 83.9 63.9 -88.0 -40.2 -0.3 -21.8 1.6 60 60 A G S S- 0 0 74 2,-0.0 2,-0.1 3,-0.0 -1,-0.1 0.947 122.6 -13.3 -46.9 -64.3 -3.3 -24.1 2.2 61 61 A K S S- 0 0 140 2,-0.1 2,-0.4 0, 0.0 -3,-0.0 -0.288 93.3 -70.8-120.5-154.8 -5.2 -22.9 -0.8 62 62 A L S S+ 0 0 101 -2,-0.1 -37,-1.1 -5,-0.1 2,-0.3 -0.411 88.8 118.2-103.5 53.7 -5.1 -20.0 -3.2 63 63 A E E -B 24 0A 37 -2,-0.4 -5,-4.3 -39,-0.2 2,-0.3 -0.827 43.3-164.2-119.4 158.5 -6.2 -17.4 -0.7 64 64 A A E -BC 23 57A 2 -41,-1.7 -41,-4.6 -2,-0.3 2,-0.4 -0.971 5.6-155.8-146.6 126.4 -4.5 -14.3 0.7 65 65 A E E +BC 22 56A 84 -9,-2.2 -9,-2.2 -2,-0.3 2,-0.3 -0.825 26.1 147.0-104.9 142.0 -5.4 -12.3 3.7 66 66 A G E -BC 21 55A 4 -45,-2.0 -45,-1.9 -2,-0.4 2,-0.4 -0.958 37.5-116.2-160.4 172.6 -4.5 -8.7 4.3 67 67 A Y E -BC 20 54A 42 -13,-1.9 -14,-1.7 -2,-0.3 -13,-1.3 -0.969 20.0-151.4-125.1 138.2 -5.6 -5.4 5.8 68 68 A A E -BC 19 52A 4 -49,-2.7 -49,-1.4 -2,-0.4 2,-0.3 -0.648 8.3-158.8-103.5 161.7 -6.5 -2.1 4.0 69 69 A K E -BC 18 51A 4 -18,-1.6 -18,-1.4 -2,-0.2 2,-0.3 -0.984 6.3-172.1-141.2 149.7 -6.2 1.4 5.4 70 70 A I E -BC 17 50A 10 -53,-0.9 -53,-1.6 -2,-0.3 2,-0.2 -0.998 3.8-168.1-144.7 142.0 -7.8 4.7 4.5 71 71 A Y - 0 0 10 -22,-0.9 -55,-0.2 -2,-0.3 3,-0.1 -0.534 23.1-133.8-118.2-175.1 -7.1 8.3 5.6 72 72 A N S S+ 0 0 104 -57,-0.5 2,-0.4 1,-0.4 -1,-0.1 0.804 87.6 10.0-105.8 -55.8 -8.8 11.7 5.3 73 73 A D >> - 0 0 69 -58,-0.2 4,-2.0 1,-0.1 3,-0.8 -0.998 56.7-144.2-133.5 131.6 -6.0 14.1 4.3 74 74 A E H 3> S+ 0 0 116 -2,-0.4 4,-3.8 1,-0.2 5,-0.2 0.707 98.1 74.6 -63.1 -19.8 -2.5 13.2 3.3 75 75 A K H 3> S+ 0 0 172 2,-0.2 4,-0.5 1,-0.2 -1,-0.2 0.939 105.8 31.9 -57.6 -50.3 -1.5 16.3 5.1 76 76 A A H X> S+ 0 0 31 -3,-0.8 4,-3.8 2,-0.2 3,-1.5 0.954 121.1 50.1 -71.8 -52.8 -2.0 14.6 8.4 77 77 A M H 3< S+ 0 0 5 -4,-2.0 4,-0.3 1,-0.3 -2,-0.2 0.896 103.8 59.4 -51.5 -46.1 -1.0 11.1 7.2 78 78 A A H 3< S+ 0 0 57 -4,-3.8 -1,-0.3 1,-0.2 -2,-0.2 0.793 119.8 31.0 -53.8 -28.8 2.1 12.6 5.7 79 79 A T H << S+ 0 0 116 -3,-1.5 -2,-0.2 -4,-0.5 -1,-0.2 0.907 125.6 39.8 -92.9 -62.0 2.9 13.6 9.2 80 80 A I S < S+ 0 0 75 -4,-3.8 -3,-0.2 -5,-0.1 -2,-0.1 0.973 110.9 57.6 -50.5 -79.0 1.3 11.0 11.4 81 81 A E S S- 0 0 14 -4,-0.3 2,-0.2 1,-0.1 0, 0.0 0.147 87.1-121.5 -45.8 171.4 2.2 7.9 9.3 82 82 A T >> - 0 0 78 1,-0.0 4,-2.5 0, 0.0 3,-1.2 -0.727 29.2 -94.5-118.4 168.3 5.8 7.2 8.5 83 83 A K H 3> S+ 0 0 169 1,-0.3 4,-1.4 -2,-0.2 -2,-0.1 0.732 124.5 66.0 -51.8 -21.8 7.8 6.8 5.3 84 84 A S H 3> S+ 0 0 77 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.932 106.4 36.9 -66.2 -47.8 7.0 3.1 5.9 85 85 A V H <> S+ 0 0 24 -3,-1.2 4,-1.1 1,-0.2 -2,-0.2 0.898 121.7 45.5 -70.6 -42.4 3.3 3.6 5.3 86 86 A L H < S+ 0 0 52 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.711 103.1 69.7 -72.1 -21.1 3.9 6.2 2.6 87 87 A E H < S+ 0 0 149 -4,-1.4 -1,-0.2 -5,-0.4 -2,-0.2 0.946 95.3 51.4 -60.7 -51.6 6.5 3.8 1.2 88 88 A K H < S+ 0 0 49 -4,-1.3 -2,-0.2 -3,-0.2 -1,-0.2 0.960 87.6 89.3 -48.9 -63.8 3.9 1.3 0.1 89 89 A N S < S- 0 0 29 -4,-1.1 -38,-0.1 -37,-0.2 -36,-0.0 -0.135 84.9-131.8 -41.1 108.5 1.9 3.8 -1.7 90 90 A K - 0 0 124 1,-0.1 3,-0.1 2,-0.0 -1,-0.1 -0.143 15.1-110.4 -62.7 163.1 3.5 3.7 -5.2 91 91 A I S S- 0 0 157 1,-0.2 2,-0.3 -4,-0.1 -1,-0.1 0.985 86.5 -11.8 -57.7 -82.5 4.6 6.8 -6.9 92 92 A E - 0 0 164 1,-0.0 -1,-0.2 -3,-0.0 2,-0.2 -0.745 66.6-131.4-119.8 167.9 2.1 7.0 -9.8 93 93 A E - 0 0 97 -2,-0.3 -1,-0.0 1,-0.2 2,-0.0 -0.507 22.6-105.5-110.5-180.0 -0.4 4.6 -11.3 94 94 A E - 0 0 123 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.079 20.8-165.3 -88.1-158.0 -1.2 3.5 -14.8 95 95 A A - 0 0 83 1,-0.0 3,-0.1 -2,-0.0 -2,-0.0 -0.102 10.3-160.7 164.5 86.2 -4.1 4.4 -17.1 96 96 A E S S- 0 0 176 1,-0.2 2,-0.3 2,-0.1 4,-0.1 0.918 71.1 -45.3 -40.5 -65.1 -4.9 2.4 -20.2 97 97 A A - 0 0 59 2,-0.2 -1,-0.2 1,-0.1 0, 0.0 -0.971 55.6 -91.6-166.7 162.9 -7.0 5.2 -21.7 98 98 A E S S+ 0 0 206 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 0.899 110.7 67.7 -46.6 -49.3 -9.7 7.7 -20.8 99 99 A V + 0 0 125 -3,-0.1 2,-0.3 0, 0.0 -2,-0.2 -0.560 68.3 141.7 -77.6 137.8 -12.3 5.2 -21.9 100 100 A A + 0 0 75 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.967 33.4 33.3-165.3 168.9 -12.7 2.2 -19.8 101 101 A E 0 0 201 -2,-0.3 -1,-0.2 1,-0.2 0, 0.0 0.304 360.0 360.0 57.6 164.1 -15.2 -0.2 -18.3 102 102 A E 0 0 243 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.563 360.0 360.0 -46.0 360.0 -18.4 -1.2 -20.1