==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 20-APR-07 2YWK . COMPND 2 MOLECULE: PUTATIVE RNA-BINDING PROTEIN 11; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.KAWAZOE,C.TAKEMOTO,T.KAMINISHI,T.UCHIKUBO-KAMO,A.NISHINO, . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5468.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A Q > 0 0 171 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -31.6 36.7 7.1 0.4 2 6 A E T 4 + 0 0 116 1,-0.2 4,-0.3 2,-0.2 0, 0.0 0.879 360.0 37.3 -53.9 -43.2 38.0 5.7 -2.9 3 7 A E T >4 S+ 0 0 83 2,-0.2 3,-1.4 1,-0.2 4,-0.3 0.867 111.1 58.7 -79.8 -37.5 34.5 5.5 -4.3 4 8 A A G >4 S+ 0 0 46 1,-0.3 3,-1.6 2,-0.2 -2,-0.2 0.895 100.1 59.0 -57.8 -39.5 33.2 8.7 -2.7 5 9 A D G 3< S+ 0 0 77 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.686 109.2 44.4 -62.9 -19.0 36.0 10.6 -4.5 6 10 A R G < S+ 0 0 19 -3,-1.4 47,-2.8 -4,-0.3 2,-0.5 0.269 94.4 97.9-108.4 7.6 34.6 9.4 -7.8 7 11 A T E < -A 52 0A 30 -3,-1.6 2,-0.3 -4,-0.3 45,-0.2 -0.872 50.3-172.2-105.8 125.4 30.9 10.1 -7.0 8 12 A V E -A 51 0A 1 43,-3.0 43,-2.7 -2,-0.5 2,-0.3 -0.811 17.6-129.5-113.4 155.0 29.1 13.2 -8.2 9 13 A F E -AB 50 79A 62 70,-2.9 70,-2.0 -2,-0.3 2,-0.4 -0.798 17.0-168.0-102.6 142.5 25.6 14.5 -7.3 10 14 A V E +AB 49 78A 0 39,-2.5 39,-2.5 -2,-0.3 68,-0.2 -0.989 16.5 164.8-133.2 123.9 23.1 15.6 -9.9 11 15 A G E + B 0 77A 3 66,-2.8 66,-2.2 -2,-0.4 37,-0.2 -0.701 44.1 59.8-128.7-177.2 19.9 17.4 -9.0 12 16 A N + 0 0 51 35,-0.5 2,-0.4 64,-0.2 36,-0.2 0.895 68.1 178.6 62.0 42.5 17.1 19.5 -10.4 13 17 A L - 0 0 8 34,-2.3 -1,-0.2 -3,-0.2 59,-0.1 -0.642 27.9-122.9 -81.5 128.3 16.1 16.6 -12.6 14 18 A E > - 0 0 40 -2,-0.4 3,-2.2 57,-0.4 -1,-0.1 -0.307 31.8-103.1 -65.0 151.6 13.0 17.2 -14.8 15 19 A A T 3 S+ 0 0 81 1,-0.3 -1,-0.1 57,-0.1 -2,-0.1 0.755 119.2 55.3 -48.7 -32.7 10.2 14.7 -14.3 16 20 A R T 3 S+ 0 0 137 56,-0.1 -1,-0.3 2,-0.0 2,-0.1 0.587 79.6 115.7 -81.2 -9.9 11.0 12.8 -17.5 17 21 A V < + 0 0 6 -3,-2.2 2,-0.3 54,-0.1 -4,-0.0 -0.389 41.6 179.6 -65.8 132.0 14.7 12.1 -16.6 18 22 A R >> - 0 0 147 -2,-0.1 4,-1.8 1,-0.0 3,-1.1 -0.848 44.2-101.3-126.7 164.2 15.5 8.5 -16.2 19 23 A E H 3> S+ 0 0 83 -2,-0.3 4,-2.6 1,-0.3 5,-0.2 0.840 119.9 60.9 -55.5 -34.6 18.8 6.7 -15.3 20 24 A E H 3> S+ 0 0 155 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.846 105.4 47.2 -62.7 -34.4 19.3 5.8 -18.9 21 25 A I H <> S+ 0 0 39 -3,-1.1 4,-2.5 2,-0.2 -1,-0.2 0.882 111.4 50.3 -73.6 -40.2 19.4 9.5 -19.9 22 26 A L H X S+ 0 0 0 -4,-1.8 4,-2.8 2,-0.2 5,-0.3 0.903 108.9 53.1 -64.4 -39.7 21.8 10.4 -17.0 23 27 A Y H X S+ 0 0 105 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.949 110.5 46.6 -60.2 -48.9 24.1 7.6 -18.2 24 28 A E H < S+ 0 0 135 -4,-1.8 4,-0.5 1,-0.2 -2,-0.2 0.928 115.6 46.1 -58.6 -47.4 24.2 8.9 -21.7 25 29 A L H >< S+ 0 0 29 -4,-2.5 3,-0.6 1,-0.2 -2,-0.2 0.914 117.5 40.2 -64.0 -46.9 24.8 12.5 -20.6 26 30 A F H >< S+ 0 0 0 -4,-2.8 3,-2.1 1,-0.2 4,-0.2 0.705 94.9 79.0 -79.2 -21.0 27.5 11.7 -18.0 27 31 A L G >< S+ 0 0 76 -4,-2.0 3,-1.8 1,-0.3 -1,-0.2 0.782 81.3 70.8 -58.8 -24.6 29.4 9.1 -20.0 28 32 A Q G < S+ 0 0 125 -3,-0.6 -1,-0.3 -4,-0.5 -2,-0.1 0.760 91.9 57.9 -65.5 -19.9 31.0 11.9 -22.0 29 33 A A G < S- 0 0 4 -3,-2.1 -1,-0.3 1,-0.3 32,-0.2 0.484 126.8 -70.9 -86.3 -3.2 33.0 12.8 -18.9 30 34 A G S < S- 0 0 17 -3,-1.8 -1,-0.3 -4,-0.2 0, 0.0 -0.666 76.2 -26.8 135.4 169.0 34.5 9.3 -18.7 31 35 A P - 0 0 61 0, 0.0 23,-2.4 0, 0.0 24,-0.5 -0.201 60.8-139.4 -52.8 136.5 33.8 5.6 -18.0 32 36 A L E -C 53 0A 10 21,-0.2 21,-0.3 1,-0.1 3,-0.1 -0.788 20.9-170.0-104.5 144.4 30.9 5.1 -15.6 33 37 A T E S- 0 0 67 19,-3.2 2,-0.3 1,-0.4 20,-0.2 0.846 73.3 -30.5 -92.2 -48.4 30.6 2.5 -12.8 34 38 A K E -C 52 0A 96 18,-1.5 18,-2.8 2,-0.0 -1,-0.4 -0.982 48.8-143.6-167.2 159.5 27.0 3.1 -12.0 35 39 A V E -C 51 0A 18 -2,-0.3 2,-0.4 16,-0.2 16,-0.2 -0.992 18.4-173.2-132.5 139.2 24.2 5.7 -12.0 36 40 A T E -C 50 0A 67 14,-2.9 14,-2.5 -2,-0.4 2,-0.6 -0.976 19.1-157.2-141.7 126.7 21.4 6.0 -9.5 37 41 A I E -C 49 0A 14 -2,-0.4 12,-0.3 12,-0.2 -18,-0.1 -0.902 42.2-113.8 -97.2 121.8 18.3 8.1 -9.2 38 42 A C E - 0 0 24 10,-1.9 8,-3.1 -2,-0.6 2,-0.3 -0.210 28.9-157.0 -59.0 143.4 17.5 8.2 -5.5 39 43 A K E -C 45 0A 141 6,-0.3 2,-0.1 1,-0.1 -1,-0.0 -0.868 12.1-126.9-118.8 153.4 14.3 6.6 -4.2 40 44 A D > - 0 0 39 4,-1.9 3,-2.0 -2,-0.3 -1,-0.1 -0.178 44.4 -78.4 -88.3-172.9 12.5 7.4 -1.0 41 45 A R T 3 S+ 0 0 229 1,-0.3 -1,-0.0 2,-0.1 -2,-0.0 0.845 133.1 48.7 -54.8 -36.9 11.4 5.1 1.8 42 46 A E T 3 S- 0 0 129 2,-0.1 -1,-0.3 1,-0.0 0, 0.0 0.396 121.6-105.0 -86.6 2.4 8.4 3.9 -0.3 43 47 A G S < S+ 0 0 38 -3,-2.0 -2,-0.1 1,-0.3 -1,-0.0 0.595 71.0 145.7 86.4 10.9 10.5 3.3 -3.4 44 48 A K - 0 0 107 1,-0.1 -4,-1.9 0, 0.0 -1,-0.3 -0.698 51.8-116.1 -85.8 128.3 9.4 6.4 -5.3 45 49 A P E - C 0 39A 93 0, 0.0 -6,-0.3 0, 0.0 2,-0.2 -0.326 30.3-150.8 -63.3 143.5 12.1 8.0 -7.5 46 50 A K E - 0 0 96 -8,-3.1 -7,-0.0 2,-0.3 0, 0.0 -0.445 29.3 -97.1-105.9-178.7 13.1 11.6 -6.6 47 51 A S E S+ 0 0 62 -2,-0.2 -34,-2.3 -10,-0.1 -35,-0.5 0.001 99.0 51.4 -91.8 30.0 14.5 14.5 -8.6 48 52 A F E + 0 0 75 -10,-0.3 -10,-1.9 -37,-0.2 -2,-0.3 -0.983 55.9 159.5-157.5 163.1 18.1 13.8 -7.9 49 53 A G E -AC 10 37A 0 -39,-2.5 -39,-2.5 -2,-0.3 2,-0.4 -0.927 32.1 -93.5-165.9-170.0 20.7 11.1 -7.9 50 54 A F E -AC 9 36A 94 -14,-2.5 -14,-2.9 -2,-0.3 2,-0.5 -0.951 17.2-158.4-128.1 145.1 24.4 10.1 -7.9 51 55 A V E -AC 8 35A 0 -43,-2.7 -43,-3.0 -2,-0.4 2,-0.6 -0.990 10.4-159.2-123.6 121.9 26.8 9.2 -10.8 52 56 A C E -AC 7 34A 5 -18,-2.8 -19,-3.2 -2,-0.5 -18,-1.5 -0.914 8.1-158.9-108.0 120.1 29.8 7.1 -9.9 53 57 A F E - C 0 32A 0 -47,-2.8 -21,-0.2 -2,-0.6 -47,-0.1 -0.578 23.3-130.6 -93.0 157.2 32.8 7.3 -12.3 54 58 A K S S+ 0 0 116 -23,-2.4 -22,-0.1 -2,-0.2 -1,-0.1 0.808 96.5 41.4 -75.0 -27.9 35.5 4.7 -12.7 55 59 A H S > S- 0 0 94 -24,-0.5 3,-1.6 -49,-0.1 4,-0.3 -0.966 72.8-139.5-126.2 136.2 38.1 7.5 -12.5 56 60 A P T >> S+ 0 0 58 0, 0.0 3,-1.6 0, 0.0 4,-0.6 0.739 98.2 74.5 -62.2 -23.2 38.3 10.6 -10.2 57 61 A E H 3> S+ 0 0 118 1,-0.3 4,-1.1 2,-0.2 3,-0.4 0.796 86.9 64.6 -59.6 -28.2 39.5 12.7 -13.1 58 62 A S H <> S+ 0 0 5 -3,-1.6 4,-3.0 1,-0.2 -1,-0.3 0.707 84.9 74.1 -69.1 -21.3 36.0 12.6 -14.4 59 63 A V H <> S+ 0 0 19 -3,-1.6 4,-2.3 -4,-0.3 5,-0.2 0.948 98.8 43.1 -58.2 -51.5 34.6 14.5 -11.5 60 64 A S H X S+ 0 0 83 -4,-0.6 4,-2.6 -3,-0.4 5,-0.3 0.911 114.8 51.2 -62.0 -42.3 36.1 17.9 -12.6 61 65 A Y H X S+ 0 0 135 -4,-1.1 4,-3.0 1,-0.2 5,-0.4 0.938 109.9 49.4 -60.3 -47.7 35.0 17.2 -16.2 62 66 A A H X S+ 0 0 0 -4,-3.0 4,-2.4 2,-0.2 5,-0.5 0.920 114.7 43.1 -58.9 -47.0 31.4 16.4 -15.1 63 67 A I H X S+ 0 0 53 -4,-2.3 4,-1.5 -5,-0.2 -1,-0.2 0.940 119.1 43.0 -66.1 -47.1 31.0 19.5 -13.0 64 68 A A H < S+ 0 0 81 -4,-2.6 -2,-0.2 -5,-0.2 -1,-0.2 0.887 124.0 35.1 -66.4 -41.6 32.6 21.8 -15.5 65 69 A L H < S+ 0 0 95 -4,-3.0 -3,-0.2 -5,-0.3 -2,-0.2 0.814 128.6 29.5 -84.0 -33.8 30.9 20.4 -18.6 66 70 A L H >< S+ 0 0 3 -4,-2.4 3,-2.1 -5,-0.4 10,-0.2 0.638 80.7 111.3-107.7 -15.8 27.5 19.5 -17.2 67 71 A N T 3< S+ 0 0 86 -4,-1.5 10,-0.2 -5,-0.5 3,-0.1 -0.429 93.8 12.2 -63.2 129.1 26.6 21.8 -14.4 68 72 A G T 3 S+ 0 0 39 8,-2.6 -1,-0.3 1,-0.3 9,-0.1 0.327 88.4 147.8 88.3 -8.2 23.7 24.0 -15.6 69 73 A I < - 0 0 68 -3,-2.1 7,-2.8 6,-0.2 2,-0.8 -0.389 52.1-120.7 -63.2 133.1 23.0 21.9 -18.7 70 74 A R E -D 75 0B 173 5,-0.3 2,-0.7 -3,-0.1 3,-0.3 -0.677 29.5-174.1 -81.3 110.8 19.3 22.0 -19.5 71 75 A L E > S-D 74 0B 22 3,-2.3 3,-1.7 -2,-0.8 -57,-0.4 -0.942 83.0 -13.0-105.9 114.6 18.0 18.5 -19.5 72 76 A Y T 3 S- 0 0 97 -2,-0.7 -1,-0.2 1,-0.3 -56,-0.1 0.876 133.3 -55.6 57.7 37.8 14.4 18.6 -20.7 73 77 A G T 3 S+ 0 0 46 -3,-0.3 -1,-0.3 1,-0.2 -3,-0.1 0.167 116.3 110.6 85.0 -17.3 14.6 22.3 -20.3 74 78 A R E < S-D 71 0B 101 -3,-1.7 -3,-2.3 -5,-0.0 2,-0.5 -0.810 70.6-126.0 -96.5 121.1 15.6 22.3 -16.6 75 79 A P E -D 70 0B 44 0, 0.0 -5,-0.3 0, 0.0 -6,-0.2 -0.492 31.6-137.7 -65.8 116.5 19.2 23.3 -15.7 76 80 A I - 0 0 0 -7,-2.8 -8,-2.6 -2,-0.5 2,-0.6 -0.341 3.8-130.9 -75.2 156.6 20.7 20.5 -13.8 77 81 A N E -B 11 0A 87 -66,-2.2 -66,-2.8 -10,-0.2 2,-0.5 -0.945 23.4-173.9-109.6 116.7 22.8 20.9 -10.7 78 82 A V E +B 10 0A 7 -2,-0.6 2,-0.3 -68,-0.2 -68,-0.2 -0.957 9.4 170.7-114.3 122.3 26.0 19.0 -10.7 79 83 A S E -B 9 0A 59 -70,-2.0 -70,-2.9 -2,-0.5 -2,-0.0 -0.931 18.6-136.0-129.7 154.8 28.1 19.0 -7.5 80 84 A G - 0 0 21 -2,-0.3 2,-0.8 -72,-0.2 -72,-0.1 -0.470 38.2 -69.8-106.9 177.8 31.2 17.1 -6.4 81 85 A P + 0 0 57 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.520 64.0 165.8 -68.8 103.0 32.6 15.3 -3.3 82 86 A S + 0 0 118 -2,-0.8 2,-0.3 2,-0.0 -3,-0.0 -0.811 13.7 170.7-120.4 160.7 33.4 18.0 -0.9 83 87 A S 0 0 119 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.922 360.0 360.0-154.9 174.3 34.2 18.2 2.9 84 88 A G 0 0 153 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.295 360.0 360.0 68.0 360.0 35.4 20.7 5.4