==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 28-FEB-05 1YZA . COMPND 2 MOLECULE: REDESIGNED APO-CYTOCHROME B562; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.FENG,T.TAKEI,R.LIPSITZ,N.TJANDRA,Y.BAI,BERKELEY . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8085.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 81 76.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 14.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 142 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 24.7 -18.4 -22.4 -1.6 2 2 A D - 0 0 112 1,-0.1 3,-0.1 3,-0.1 0, 0.0 -0.254 360.0-176.5 -78.6 170.6 -16.3 -22.4 1.6 3 3 A L S S+ 0 0 148 -2,-0.0 -1,-0.1 0, 0.0 3,-0.1 0.140 72.5 64.8-152.8 15.9 -17.7 -21.8 5.1 4 4 A E S S+ 0 0 83 1,-0.1 4,-0.1 4,-0.0 2,-0.1 -0.358 73.2 91.0-142.0 56.7 -14.5 -21.9 7.2 5 5 A D + 0 0 83 1,-0.1 -1,-0.1 3,-0.1 -3,-0.1 -0.505 46.2 102.9-152.9 75.8 -12.4 -18.9 6.2 6 6 A N S S- 0 0 123 -3,-0.1 -1,-0.1 -2,-0.1 0, 0.0 -0.386 105.6 -57.9-157.3 69.2 -13.0 -15.7 8.1 7 7 A D S S+ 0 0 142 -3,-0.1 -2,-0.1 2,-0.0 0, 0.0 0.921 86.6 150.1 55.6 46.4 -10.3 -15.0 10.7 8 8 A E - 0 0 104 -4,-0.1 -3,-0.1 1,-0.0 -4,-0.0 0.958 65.4 -84.8 -71.0 -88.5 -11.0 -18.4 12.4 9 9 A T S S+ 0 0 103 3,-0.0 4,-0.2 5,-0.0 -2,-0.0 0.337 116.1 69.8-159.2 -26.9 -7.7 -19.6 14.0 10 10 A G S S+ 0 0 58 2,-0.1 2,-0.1 4,-0.1 -5,-0.0 0.814 93.3 70.2 -72.1 -30.4 -5.7 -21.4 11.2 11 11 A N S S+ 0 0 56 2,-0.2 2,-4.1 1,-0.1 4,-0.1 -0.455 109.3 3.7 -85.7 161.0 -5.1 -18.1 9.5 12 12 A D S S+ 0 0 136 1,-0.3 -1,-0.1 2,-0.1 -2,-0.1 -0.243 129.0 59.3 64.3 -61.8 -2.8 -15.3 10.8 13 13 A N S S+ 0 0 110 -2,-4.1 2,-2.2 -4,-0.2 -1,-0.3 0.308 72.4 114.8 -78.5 11.5 -1.8 -17.6 13.7 14 14 A G S S+ 0 0 44 3,-0.0 -1,-0.2 2,-0.0 2,-0.2 -0.282 73.9 42.8 -78.7 54.5 -0.6 -20.0 11.1 15 15 A K + 0 0 84 -2,-2.2 -2,-0.1 -4,-0.1 9,-0.0 -0.533 42.7 123.2-158.3-133.9 3.0 -19.6 12.3 16 16 A G S S+ 0 0 79 -2,-0.2 -1,-0.1 1,-0.1 -3,-0.0 0.961 93.0 42.7 56.1 55.0 4.9 -19.3 15.6 17 17 A G S S+ 0 0 49 -3,-0.1 -1,-0.1 2,-0.1 3,-0.1 -0.039 93.5 66.7 175.2 -54.6 7.2 -22.3 14.8 18 18 A E S S- 0 0 133 1,-0.2 4,-0.3 3,-0.0 3,-0.3 0.180 87.1-158.8 -75.9 21.0 8.4 -22.2 11.3 19 19 A K - 0 0 153 1,-0.2 2,-0.5 2,-0.1 -1,-0.2 0.237 35.5 -57.9 30.0-155.4 10.3 -19.1 12.3 20 20 A A S S+ 0 0 54 4,-0.2 -1,-0.2 1,-0.1 3,-0.0 -0.923 91.8 103.2-121.2 104.6 11.4 -16.7 9.5 21 21 A D S S+ 0 0 118 -2,-0.5 -1,-0.1 -3,-0.3 -2,-0.1 0.465 86.0 3.0-144.3 -48.5 13.7 -18.2 6.9 22 22 A N S > S- 0 0 76 -4,-0.3 4,-1.4 -3,-0.1 -3,-0.0 0.474 132.0 -8.0-111.3-107.5 11.8 -19.0 3.6 23 23 A A H > S+ 0 0 35 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.845 131.1 60.3 -65.5 -35.9 8.1 -18.1 2.9 24 24 A A H > S+ 0 0 15 1,-0.2 4,-1.9 -6,-0.2 5,-0.2 0.955 105.4 46.7 -57.5 -51.6 7.6 -17.1 6.6 25 25 A Q H > S+ 0 0 106 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.856 112.7 53.0 -58.9 -36.0 10.2 -14.4 6.3 26 26 A V H >X S+ 0 0 20 -4,-1.4 4,-1.6 2,-0.2 3,-1.6 0.995 104.8 50.7 -62.7 -66.3 8.6 -13.3 3.0 27 27 A K H >X S+ 0 0 92 -4,-2.6 4,-2.0 1,-0.3 3,-1.1 0.880 111.6 48.7 -38.2 -54.7 5.0 -12.9 4.2 28 28 A D H 3X S+ 0 0 73 -4,-1.9 4,-1.0 1,-0.3 -1,-0.3 0.841 111.0 52.5 -57.3 -32.8 6.2 -10.8 7.1 29 29 A A H X S+ 0 0 46 -4,-1.0 4,-2.8 -3,-0.3 3,-1.5 0.977 116.0 55.6 -59.0 -57.2 5.5 -2.5 3.0 34 34 A R H 3X S+ 0 0 113 -4,-1.8 4,-2.2 1,-0.3 3,-0.4 0.911 107.8 46.4 -38.4 -67.7 1.7 -2.7 3.2 35 35 A A H 3X S+ 0 0 54 -4,-3.3 4,-1.3 1,-0.3 -1,-0.3 0.765 114.4 52.5 -50.5 -24.7 1.5 -1.4 6.7 36 36 A A H X>S+ 0 0 73 -4,-1.3 5,-0.9 -5,-0.3 4,-0.6 0.989 111.6 41.4 -60.0 -62.2 1.4 4.7 7.3 40 40 A A H ><5S+ 0 0 27 -4,-3.0 3,-0.7 1,-0.2 -2,-0.2 0.932 105.6 66.4 -50.4 -52.2 2.7 7.2 4.8 41 41 A Q H 3<5S- 0 0 50 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.856 134.5 -16.2 -36.7 -52.8 -0.7 7.7 3.3 42 42 A K H <<5S+ 0 0 164 -4,-1.5 -1,-0.2 -3,-0.6 -2,-0.2 -0.287 128.1 58.3-158.9 66.1 -1.8 9.4 6.6 43 43 A A T <<5S+ 0 0 58 -3,-0.7 -3,-0.2 -4,-0.6 -4,-0.1 0.313 103.7 30.0-153.3 -58.1 0.5 8.7 9.6 44 44 A T S - 0 0 49 0, 0.0 3,-0.5 0, 0.0 -5,-0.0 0.802 67.7 -10.5 -86.5-101.6 7.0 11.7 4.3 47 47 A K G > S+ 0 0 87 1,-0.2 3,-0.6 2,-0.1 -7,-0.0 0.632 121.9 80.7 -77.1 -13.6 7.5 13.5 1.0 48 48 A L G > + 0 0 40 1,-0.2 3,-0.6 2,-0.1 -1,-0.2 0.030 50.4 127.1 -81.6 30.4 4.2 15.3 1.6 49 49 A E G < S- 0 0 120 -3,-0.5 -1,-0.2 1,-0.3 -2,-0.1 0.766 98.6 -0.3 -57.8 -22.9 6.1 17.7 3.9 50 50 A D G < S+ 0 0 141 -3,-0.6 -1,-0.3 2,-0.1 -2,-0.1 -0.046 114.1 89.1-159.3 40.6 4.6 20.4 1.7 51 51 A K < + 0 0 44 -3,-0.6 3,-0.1 3,-0.1 -2,-0.1 -0.264 55.0 172.3-136.3 46.0 2.5 18.7 -0.9 52 52 A S > - 0 0 81 1,-0.2 2,-4.4 -4,-0.1 3,-0.8 0.254 63.1 -56.3 -45.4 180.0 -0.9 18.4 0.8 53 53 A P T 3 S+ 0 0 78 0, 0.0 -1,-0.2 0, 0.0 -5,-0.0 0.030 121.9 86.7 -57.7 39.3 -4.0 17.1 -1.2 54 54 A D T 3 S+ 0 0 142 -2,-4.4 -2,-0.1 -3,-0.1 -3,-0.1 0.832 82.2 42.4-102.7 -63.4 -3.3 19.9 -3.7 55 55 A S S X S- 0 0 48 -3,-0.8 3,-0.8 1,-0.1 4,-0.3 -0.002 122.4 -63.5 -72.8-174.4 -0.8 18.6 -6.2 56 56 A P T 3> S+ 0 0 74 0, 0.0 4,-3.8 0, 0.0 5,-0.4 0.410 101.4 119.4 -56.1 9.4 -1.1 15.1 -7.7 57 57 A E H 3> S+ 0 0 18 -5,-0.4 4,-3.5 1,-0.3 5,-0.1 0.910 76.2 41.3 -40.1 -61.1 -0.5 14.0 -4.1 58 58 A M H <>>S+ 0 0 77 -3,-0.8 4,-2.5 1,-0.2 5,-0.5 0.896 115.1 51.9 -57.6 -42.0 -3.9 12.2 -4.0 59 59 A K H >5S+ 0 0 154 -4,-0.3 4,-1.1 1,-0.2 5,-0.3 0.904 116.9 39.3 -61.9 -41.1 -3.3 10.8 -7.5 60 60 A D H X5S+ 0 0 16 -4,-3.8 4,-2.3 3,-0.2 -2,-0.2 0.823 122.2 44.2 -78.1 -31.7 0.1 9.5 -6.5 61 61 A F H X>S+ 0 0 47 -4,-3.5 4,-3.3 -5,-0.4 5,-0.6 0.988 112.7 46.5 -74.4 -70.2 -1.2 8.4 -3.1 62 62 A R H X5S+ 0 0 144 -4,-2.5 4,-1.1 1,-0.2 -3,-0.2 0.860 129.5 30.7 -40.6 -39.8 -4.5 6.8 -4.0 63 63 A H H XX S+ 0 0 37 -4,-3.8 4,-2.7 2,-0.2 3,-1.2 0.993 115.2 37.7 -57.4 -67.8 0.3 0.0 -6.6 68 68 A L H 3X S+ 0 0 19 -4,-1.9 4,-4.0 1,-0.3 3,-0.4 0.944 120.6 46.9 -48.9 -55.5 2.2 -1.2 -3.6 69 69 A V H 3X S+ 0 0 43 -4,-3.7 4,-0.7 1,-0.2 -1,-0.3 0.691 113.3 53.0 -61.6 -16.0 -0.9 -2.8 -2.2 70 70 A G H > - 0 0 115 3,-0.1 3,-2.3 1,-0.1 4,-1.1 0.364 39.3-103.7 -17.8 142.8 8.7 -20.7 -4.6 84 84 A V H >>>S+ 0 0 17 1,-0.3 4,-4.6 2,-0.2 3,-0.9 0.853 119.1 68.6 -43.5 -46.8 10.1 -17.7 -2.6 85 85 A K H 3>5S+ 0 0 160 1,-0.3 4,-1.1 2,-0.2 -1,-0.3 0.849 104.7 43.5 -44.6 -37.9 13.1 -17.6 -5.0 86 86 A E H <>5S+ 0 0 121 -3,-2.3 4,-1.3 2,-0.2 -1,-0.3 0.774 119.5 43.7 -79.0 -27.2 10.6 -16.4 -7.6 87 87 A A H XX S+ 0 0 28 -4,-2.4 4,-1.3 2,-0.2 3,-0.5 0.839 101.2 51.8 -74.1 -35.3 10.0 -8.5 -4.6 92 92 A E H >S+ 0 0 14 -3,-0.5 4,-3.2 -4,-0.3 5,-0.5 0.929 95.4 62.5 -81.3 -49.6 8.9 -3.7 -6.8 95 95 A K H X5S+ 0 0 110 -4,-1.3 4,-1.0 1,-0.3 -2,-0.2 0.874 111.5 41.7 -42.0 -43.7 11.9 -1.9 -5.3 96 96 A T H X5S+ 0 0 104 -4,-1.6 4,-1.2 2,-0.2 -1,-0.3 0.930 112.9 53.1 -71.1 -46.7 12.3 -0.3 -8.7 97 97 A T H >X5S+ 0 0 59 -4,-1.4 4,-1.2 -5,-0.3 3,-1.0 0.944 112.4 43.3 -54.4 -52.8 8.6 0.2 -9.3 98 98 A I H 3X5S+ 0 0 33 -4,-3.2 4,-5.7 1,-0.3 5,-0.3 0.785 104.6 66.7 -65.5 -25.7 8.1 2.1 -6.1 99 99 A R H 3X