==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 28-FEB-05 1YZC . COMPND 2 MOLECULE: EDESIGNED APO-CYTOCHROME B562; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.FENG,Z.ZHOU,Y.BAI,BERKELEY STRUCTURAL GENOMICS CENTER . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8506.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 49.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 148 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 143.4 -24.4 1.6 22.6 2 2 A D - 0 0 108 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.417 360.0-153.4 -74.6 152.3 -20.6 0.8 22.6 3 3 A L + 0 0 127 -2,-0.1 -1,-0.1 3,-0.0 0, 0.0 0.887 40.5 133.3 -89.8 -80.4 -19.6 -2.9 22.4 4 4 A E + 0 0 121 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.203 32.1 98.6 60.0-157.2 -16.2 -3.4 24.0 5 5 A D + 0 0 133 1,-0.2 2,-0.4 2,-0.1 -1,-0.1 0.779 59.4 145.6 49.9 23.9 -15.8 -6.3 26.4 6 6 A N + 0 0 80 1,-0.2 -1,-0.2 2,-0.1 -3,-0.0 -0.733 7.0 134.3 -93.3 139.9 -14.3 -8.2 23.5 7 7 A D > + 0 0 108 -2,-0.4 4,-0.9 -3,-0.1 3,-0.2 0.393 65.0 63.3-150.6 -37.4 -11.5 -10.7 24.1 8 8 A E T 4 S+ 0 0 192 1,-0.2 -2,-0.1 2,-0.2 4,-0.0 0.253 74.5 103.0 -81.3 17.2 -12.3 -13.9 22.1 9 9 A T T 4 S- 0 0 105 1,-0.1 -1,-0.2 5,-0.0 -3,-0.0 -0.027 114.4 -80.4 -89.1 34.2 -11.9 -11.7 19.0 10 10 A G T >> S+ 0 0 31 -3,-0.2 4,-1.7 1,-0.1 3,-0.6 0.989 72.7 160.3 68.7 59.1 -8.5 -13.2 18.4 11 11 A N T 3< + 0 0 123 -4,-0.9 -1,-0.1 1,-0.2 -3,-0.1 0.452 65.5 71.3 -90.0 0.1 -6.5 -11.1 20.9 12 12 A D T 34 S- 0 0 152 -5,-0.1 -1,-0.2 3,-0.0 -2,-0.1 0.442 125.7 -0.8 -93.7 0.3 -3.7 -13.7 20.8 13 13 A N T <4 S- 0 0 79 -3,-0.6 3,-0.3 2,-0.1 -2,-0.2 0.378 72.4-148.3-156.1 -33.6 -2.7 -12.7 17.3 14 14 A G S < S+ 0 0 66 -4,-1.7 -3,-0.1 1,-0.2 -4,-0.1 0.618 94.5 25.1 64.5 5.9 -5.0 -9.9 16.0 15 15 A K + 0 0 141 -5,-0.1 -1,-0.2 3,-0.0 -2,-0.1 0.084 57.6 174.1-157.0 -81.3 -4.4 -11.5 12.6 16 16 A G + 0 0 62 -3,-0.3 -2,-0.1 1,-0.1 -3,-0.0 0.952 64.8 92.4 57.4 46.2 -3.4 -15.2 12.2 17 17 A G + 0 0 51 8,-0.0 3,-0.2 3,-0.0 -1,-0.1 0.028 32.1 119.9-158.4 33.4 -3.7 -14.8 8.4 18 18 A E - 0 0 131 1,-0.2 2,-1.3 2,-0.1 3,-0.1 0.512 48.4-170.7 -82.4 -0.2 -0.2 -13.9 7.2 19 19 A K - 0 0 135 1,-0.2 -1,-0.2 5,-0.1 5,-0.0 -0.169 7.0-170.1 47.2 -85.4 -0.4 -17.1 5.1 20 20 A A + 0 0 75 -2,-1.3 -1,-0.2 -3,-0.2 -2,-0.1 0.893 40.6 129.6 69.8 35.9 3.3 -17.1 4.0 21 21 A D S S- 0 0 114 -3,-0.1 2,-0.2 1,-0.1 63,-0.1 0.904 76.7 -49.1 -85.7 -83.6 2.6 -19.9 1.5 22 22 A N S S- 0 0 77 61,-0.1 -1,-0.1 62,-0.0 -3,-0.0 -0.613 107.0 -31.4-161.9 95.6 3.9 -19.0 -1.9 23 23 A A S > S+ 0 0 11 -2,-0.2 4,-1.5 1,-0.1 57,-0.1 0.149 116.6 93.4 79.2 -23.3 3.2 -15.6 -3.6 24 24 A A H >> S+ 0 0 25 1,-0.2 4,-1.8 2,-0.2 3,-0.5 0.972 83.2 49.8 -65.1 -50.0 -0.1 -15.5 -1.8 25 25 A Q H 3> S+ 0 0 81 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.804 106.0 59.7 -59.0 -25.9 1.3 -13.5 1.1 26 26 A V H 3> S+ 0 0 16 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.911 103.1 50.0 -71.3 -39.1 2.8 -11.2 -1.5 27 27 A K H X S+ 0 0 131 -4,-2.0 4,-1.7 -5,-0.2 3,-0.5 0.984 105.8 42.4 -58.3 -59.0 -2.9 -0.0 -1.7 35 35 A A H 3X S+ 0 0 56 -4,-2.0 4,-4.0 1,-0.2 5,-0.4 0.838 107.0 65.9 -59.4 -27.8 -5.4 0.8 1.0 36 36 A A H 3X S+ 0 0 47 -4,-1.6 4,-2.4 -5,-0.3 -1,-0.2 0.952 101.5 47.0 -59.7 -46.6 -2.6 2.7 2.8 37 37 A A H < S+ 0 0 47 -4,-1.7 3,-1.8 2,-0.2 6,-0.3 0.965 116.1 50.5 -66.7 -48.3 -6.2 5.7 -0.1 39 39 A D H 3<>S+ 0 0 81 -4,-4.0 5,-2.4 1,-0.3 4,-0.4 0.893 108.3 55.1 -57.3 -33.2 -6.5 5.6 3.7 40 40 A A H 3<5S+ 0 0 35 -4,-2.4 -1,-0.3 -5,-0.4 -2,-0.2 0.705 100.2 77.5 -71.6 -17.6 -3.7 8.1 3.8 41 41 A Q T X<5S- 0 0 58 -3,-1.8 2,-3.7 -4,-0.6 3,-0.7 0.344 121.0 -36.1 -69.4-148.7 -5.9 10.3 1.5 42 42 A K T 3 5S+ 0 0 160 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.197 134.5 64.0 -70.1 54.7 -8.8 12.4 2.8 43 43 A A T 3 5S+ 0 0 59 -2,-3.7 -1,-0.2 -4,-0.4 -3,-0.2 0.454 114.5 13.1-141.9 -51.8 -9.6 9.5 5.2 44 44 A T S < S- 0 0 100 -2,-4.5 3,-0.5 51,-0.1 -2,-0.0 -0.948 71.5 -22.8-125.4 112.4 -4.7 23.5 -1.7 55 55 A S T > S- 0 0 72 -2,-0.5 3,-1.4 1,-0.2 4,-0.2 -0.311 122.5 -25.2 82.0-172.5 -1.9 23.6 -4.3 56 56 A P T 3>>S+ 0 0 54 0, 0.0 4,-2.7 0, 0.0 5,-0.6 0.506 105.6 109.5 -53.6 2.6 -0.6 20.4 -6.1 57 57 A E H <>5S+ 0 0 21 -3,-0.5 4,-1.3 1,-0.2 5,-0.2 0.903 79.2 49.7 -47.5 -38.7 -1.9 18.5 -3.0 58 58 A M H <>5S+ 0 0 90 -3,-1.4 4,-3.4 2,-0.2 -1,-0.2 0.978 115.7 38.7 -65.6 -57.0 -4.5 17.2 -5.4 59 59 A K H >>S+ 0 0 145 -4,-0.2 4,-4.4 2,-0.2 5,-0.8 0.977 114.8 50.8 -62.9 -54.7 -2.2 16.0 -8.2 60 60 A D H X5S+ 0 0 41 -4,-2.7 4,-1.0 1,-0.2 -1,-0.2 0.901 115.3 47.2 -52.6 -33.5 0.6 14.7 -6.0 61 61 A F H X - 0 0 126 -2,-0.3 4,-0.9 1,-0.1 -1,-0.1 0.046 43.6 -98.8 -78.6-162.3 6.5 -17.4 -8.2 84 84 A V H > S+ 0 0 43 2,-0.2 4,-4.0 3,-0.2 5,-0.3 0.832 122.3 53.0 -90.8 -34.5 7.3 -15.7 -4.8 85 85 A K H > S+ 0 0 131 2,-0.2 4,-2.0 1,-0.2 5,-0.1 0.974 113.2 43.1 -63.6 -51.6 11.0 -15.5 -5.5 86 86 A E H > S+ 0 0 108 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.929 117.8 48.2 -60.6 -40.7 10.4 -13.7 -8.8 87 87 A A H >X S+ 0 0 5 -4,-0.9 4,-1.4 1,-0.2 3,-0.5 0.945 107.8 52.3 -66.3 -46.7 7.8 -11.6 -7.1 88 88 A Q H 3X S+ 0 0 75 -4,-4.0 4,-1.6 1,-0.2 -1,-0.2 0.885 103.1 61.7 -59.2 -31.6 10.0 -10.7 -4.1 89 89 A A H 3X S+ 0 0 37 -4,-2.0 4,-1.7 -5,-0.3 5,-0.3 0.929 98.8 54.9 -59.7 -42.3 12.6 -9.6 -6.7 90 90 A A H X S+ 0 0 114 -4,-1.6 4,-1.5 -3,-0.2 3,-0.5 0.980 111.1 39.6 -59.5 -56.0 13.6 -5.1 -4.3 93 93 A Q H 3X S+ 0 0 130 -4,-1.7 4,-1.2 1,-0.3 -1,-0.2 0.915 120.4 47.0 -62.4 -36.5 13.7 -2.8 -7.4 94 94 A L H 3X S+ 0 0 43 -4,-2.5 4,-0.5 -5,-0.3 -1,-0.3 0.699 102.0 67.8 -77.2 -15.2 10.5 -1.2 -6.1 95 95 A K H << S+ 0 0 165 -4,-1.6 4,-0.2 -3,-0.5 -2,-0.2 0.943 103.3 41.9 -70.3 -43.7 12.0 -0.9 -2.7 96 96 A T H < S+ 0 0 112 -4,-1.5 -1,-0.2 -5,-0.1 -2,-0.2 0.875 130.2 30.6 -70.7 -32.7 14.6 1.6 -3.8 97 97 A T H < S+ 0 0 80 -4,-1.2 2,-0.6 -5,-0.2 -3,-0.2 0.907 79.0 115.8 -87.2 -79.0 11.9 3.4 -5.8 98 98 A G S < S+ 0 0 9 -4,-0.5 -3,-0.1 -5,-0.2 -1,-0.1 -0.205 84.8 25.8 47.9 -96.4 8.6 2.9 -4.0 99 99 A R + 0 0 147 -2,-0.6 -35,-0.0 -4,-0.2 0, 0.0 -0.095 62.5 169.7 -80.5-172.8 8.0 6.6 -3.2 100 100 A A S S+ 0 0 88 3,-0.1 3,-0.2 0, 0.0 -1,-0.1 0.155 71.5 28.0-162.9 -62.0 9.4 9.5 -5.2 101 101 A G + 0 0 45 1,-0.1 2,-3.3 -41,-0.1 3,-0.1 0.973 59.1 157.6 -80.0 -64.5 8.0 13.0 -4.4 102 102 A N + 0 0 123 1,-0.2 -1,-0.1 -42,-0.1 2,-0.0 0.010 68.7 57.2 65.9 -40.7 7.1 12.6 -0.7 103 103 A Q S S+ 0 0 146 -2,-3.3 -1,-0.2 3,-0.2 -2,-0.1 -0.010 71.2 75.6 -97.7-152.0 7.3 16.4 -0.5 104 104 A K S S+ 0 0 119 1,-0.2 -2,-0.1 2,-0.2 -3,-0.0 0.791 117.6 5.1 52.8 120.0 5.5 19.1 -2.6 105 105 A G 0 0 17 1,-0.2 -1,-0.2 -45,-0.0 -51,-0.1 0.662 360.0 360.0 55.4 4.9 1.9 19.5 -1.5 106 106 A G 0 0 30 -55,-0.1 -3,-0.2 -5,-0.1 -1,-0.2 0.406 360.0 360.0-143.9 360.0 2.9 17.0 1.3