==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 28-FEB-05 1YZM . COMPND 2 MOLECULE: FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.EATHIRAJ,X.PAN,C.RITACCO,D.G.LAMBRIGHT . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3610.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 87.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 80.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 456 A G > 0 0 47 0, 0.0 4,-2.3 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 -85.6 2.5 11.0 22.3 2 457 A S H > + 0 0 101 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.820 360.0 49.5 -59.8 -43.2 2.0 9.2 25.6 3 458 A P H > S+ 0 0 93 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.926 113.3 48.1 -59.7 -44.2 -0.3 6.4 24.4 4 459 A L H > S+ 0 0 22 -3,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.876 108.9 54.3 -60.9 -39.9 2.0 5.7 21.5 5 460 A L H X S+ 0 0 54 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.868 105.0 53.9 -63.2 -36.9 5.0 5.6 23.9 6 461 A Q H X S+ 0 0 134 -4,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.925 109.3 48.0 -60.3 -46.2 3.1 3.0 26.0 7 462 A Q H X S+ 0 0 98 -4,-1.8 4,-2.6 2,-0.2 5,-0.2 0.909 111.9 50.0 -59.5 -44.8 2.7 0.8 22.9 8 463 A I H X S+ 0 0 9 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.909 109.1 51.3 -61.7 -44.9 6.4 1.3 22.1 9 464 A H H X S+ 0 0 106 -4,-2.7 4,-1.9 1,-0.2 -1,-0.2 0.906 112.4 48.1 -55.3 -44.5 7.4 0.3 25.7 10 465 A N H X S+ 0 0 80 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.918 110.7 47.1 -69.0 -45.5 5.3 -2.8 25.4 11 466 A I H X S+ 0 0 23 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.903 110.8 54.8 -63.2 -39.0 6.6 -4.0 22.0 12 467 A T H X S+ 0 0 54 -4,-2.3 4,-1.8 -5,-0.2 -2,-0.2 0.922 109.6 46.7 -58.4 -44.6 10.2 -3.4 23.3 13 468 A S H X S+ 0 0 43 -4,-1.9 4,-2.1 1,-0.2 -2,-0.2 0.900 110.5 52.4 -64.0 -42.0 9.4 -5.6 26.3 14 469 A F H X S+ 0 0 103 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.858 107.6 52.3 -63.8 -36.5 7.9 -8.3 24.1 15 470 A I H X S+ 0 0 13 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.912 108.5 51.0 -63.3 -42.6 11.0 -8.3 21.8 16 471 A R H X S+ 0 0 151 -4,-1.8 4,-2.0 1,-0.2 -2,-0.2 0.913 113.0 45.2 -61.2 -43.0 13.2 -8.8 24.9 17 472 A Q H X S+ 0 0 130 -4,-2.1 4,-1.3 2,-0.2 -1,-0.2 0.883 112.5 50.7 -69.0 -39.0 11.1 -11.8 26.1 18 473 A A H <>S+ 0 0 5 -4,-2.2 5,-2.8 2,-0.2 4,-0.2 0.863 110.4 49.3 -68.4 -37.8 11.0 -13.3 22.6 19 474 A K H ><5S+ 0 0 124 -4,-2.4 3,-1.6 3,-0.2 -2,-0.2 0.929 108.4 53.9 -63.4 -44.4 14.8 -13.1 22.2 20 475 A A H 3<5S+ 0 0 92 -4,-2.0 -2,-0.2 1,-0.3 -1,-0.2 0.780 112.0 45.0 -61.8 -29.0 15.2 -14.7 25.7 21 476 A A T 3<5S- 0 0 83 -4,-1.3 -1,-0.3 -5,-0.1 -2,-0.2 0.351 114.1-118.3 -94.6 2.2 13.0 -17.6 24.5 22 477 A G T < 5 + 0 0 67 -3,-1.6 2,-0.9 -4,-0.2 -3,-0.2 0.866 58.8 152.7 64.8 39.9 14.8 -17.9 21.1 23 478 A R >< + 0 0 31 -5,-2.8 4,-2.1 1,-0.2 -1,-0.2 -0.763 14.6 174.5-104.9 87.8 11.8 -17.1 19.0 24 479 A M H > S+ 0 0 130 -2,-0.9 4,-2.6 1,-0.2 5,-0.2 0.870 72.3 51.3 -68.8 -45.3 13.2 -15.6 15.8 25 480 A D H > S+ 0 0 81 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.930 113.6 47.5 -58.4 -44.9 10.2 -15.2 13.6 26 481 A E H > S+ 0 0 101 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.900 110.3 52.4 -61.5 -45.4 8.4 -13.4 16.4 27 482 A V H X S+ 0 0 8 -4,-2.1 4,-2.2 1,-0.2 -2,-0.2 0.939 110.9 46.9 -56.7 -48.2 11.4 -11.2 17.1 28 483 A R H X S+ 0 0 135 -4,-2.6 4,-1.4 2,-0.2 -2,-0.2 0.888 113.8 45.3 -68.0 -40.2 11.7 -10.1 13.4 29 484 A T H X S+ 0 0 88 -4,-2.2 4,-2.0 -5,-0.2 -1,-0.2 0.928 114.6 49.0 -69.0 -42.7 8.0 -9.2 12.9 30 485 A L H X S+ 0 0 27 -4,-2.3 4,-2.6 1,-0.2 -2,-0.2 0.854 106.7 56.7 -61.6 -37.6 7.8 -7.4 16.3 31 486 A Q H X S+ 0 0 66 -4,-2.2 4,-2.1 -5,-0.2 -1,-0.2 0.879 108.1 47.7 -62.2 -35.6 11.0 -5.4 15.3 32 487 A E H X S+ 0 0 83 -4,-1.4 4,-2.0 2,-0.2 -2,-0.2 0.880 110.3 51.7 -72.0 -37.9 9.2 -4.2 12.2 33 488 A N H X S+ 0 0 73 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.926 111.8 47.5 -58.9 -47.2 6.1 -3.3 14.2 34 489 A L H X S+ 0 0 38 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.910 108.8 53.9 -59.2 -46.6 8.3 -1.2 16.6 35 490 A R H X S+ 0 0 149 -4,-2.1 4,-1.6 1,-0.2 -1,-0.2 0.907 110.5 46.5 -58.5 -44.6 10.1 0.5 13.7 36 491 A Q H X S+ 0 0 106 -4,-2.0 4,-1.8 1,-0.2 -1,-0.2 0.912 114.1 46.8 -65.1 -43.7 6.9 1.7 12.1 37 492 A L H X S+ 0 0 32 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.854 108.5 55.9 -69.1 -35.2 5.4 2.9 15.4 38 493 A Q H X S+ 0 0 64 -4,-2.6 4,-2.6 2,-0.2 -1,-0.2 0.890 106.9 49.8 -64.6 -38.4 8.6 4.7 16.4 39 494 A D H X S+ 0 0 94 -4,-1.6 4,-2.7 2,-0.2 5,-0.2 0.911 110.1 50.8 -66.0 -41.1 8.5 6.7 13.1 40 495 A E H X S+ 0 0 114 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.919 112.5 46.7 -59.7 -44.4 4.9 7.7 13.8 41 496 A Y H X S+ 0 0 49 -4,-2.4 4,-1.3 2,-0.2 -2,-0.2 0.931 113.9 47.5 -62.8 -47.0 5.8 8.9 17.3 42 497 A D H X S+ 0 0 77 -4,-2.6 4,-2.3 1,-0.2 3,-0.2 0.898 111.1 50.5 -63.2 -42.6 8.9 10.8 16.0 43 498 A Q H < S+ 0 0 126 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.878 107.2 53.7 -65.5 -38.0 6.9 12.5 13.2 44 499 A Q H < S+ 0 0 74 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.813 116.4 39.5 -64.7 -30.7 4.1 13.6 15.6 45 500 A Q H < 0 0 124 -4,-1.3 -2,-0.2 -3,-0.2 -1,-0.2 0.742 360.0 360.0 -86.7 -28.3 6.8 15.2 17.8 46 501 A T < 0 0 108 -4,-2.3 -3,-0.1 -5,-0.2 -4,-0.0 0.440 360.0 360.0 -80.2 360.0 8.9 16.6 14.8