==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 04-MAY-07 2YZ8 . COMPND 2 MOLECULE: OBSCURIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SAIJO,N.OHSAWA,A.NISHINO,S.KISHISHITA,L.CHEN,Z.Q.FU,J.CHRZ . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5429.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 63.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 37.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 459 A P 0 0 137 0, 0.0 2,-0.3 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0 136.9 24.3 11.8 35.3 2 460 A V + 0 0 29 23,-0.0 2,-0.3 24,-0.0 76,-0.2 -0.461 360.0 175.0 -76.2 126.9 20.8 13.2 35.9 3 461 A R - 0 0 106 -2,-0.3 23,-2.1 74,-0.0 2,-1.0 -0.890 43.2 -99.3-125.4 154.5 20.0 14.4 39.4 4 462 A F E -A 25 0A 30 -2,-0.3 21,-0.3 21,-0.2 3,-0.2 -0.681 37.7-175.1 -71.4 102.8 17.0 16.2 41.0 5 463 A Q E S+ 0 0 137 19,-1.2 2,-0.5 -2,-1.0 20,-0.2 0.865 76.4 32.7 -70.7 -38.9 18.4 19.7 40.9 6 464 A E E S-A 24 0A 62 18,-2.0 18,-2.3 -3,-0.1 -1,-0.3 -0.985 88.8-137.5-121.6 121.3 15.3 21.0 42.9 7 465 A A - 0 0 63 -2,-0.5 2,-0.1 16,-0.2 15,-0.1 -0.273 28.6 -91.2 -70.6 154.7 13.7 18.7 45.4 8 466 A L - 0 0 14 65,-0.1 2,-0.3 15,-0.1 73,-0.2 -0.417 45.1-136.1 -56.5 142.1 10.0 18.1 46.0 9 467 A K - 0 0 90 13,-0.5 2,-0.2 73,-0.1 13,-0.1 -0.841 15.4-108.6-109.7 142.7 8.6 20.5 48.6 10 468 A D - 0 0 114 -2,-0.3 2,-0.3 71,-0.1 74,-0.2 -0.498 44.2-165.8 -62.7 132.3 6.2 19.7 51.4 11 469 A L E -d 84 0B 37 72,-2.3 74,-3.1 -2,-0.2 2,-0.4 -0.924 23.1-156.9-127.9 153.5 2.7 21.1 50.7 12 470 A E E +d 85 0B 144 -2,-0.3 2,-0.3 72,-0.2 74,-0.2 -0.991 24.7 172.5-126.0 120.3 -0.5 21.9 52.5 13 471 A V E -d 86 0B 32 72,-2.7 74,-2.4 -2,-0.4 3,-0.1 -0.945 32.9-105.3-131.5 147.1 -3.7 22.2 50.4 14 472 A L E > -d 87 0B 89 -2,-0.3 3,-1.1 72,-0.2 74,-0.2 -0.374 45.2 -96.4 -65.7 147.3 -7.4 22.5 51.0 15 473 A E T 3 S+ 0 0 69 72,-2.7 49,-0.2 1,-0.2 -1,-0.1 -0.304 106.3 27.9 -56.5 143.8 -9.7 19.5 50.5 16 474 A G T 3 S+ 0 0 54 47,-3.0 46,-0.3 1,-0.2 -1,-0.2 0.171 101.7 93.2 90.7 -17.5 -11.5 19.4 47.2 17 475 A G S < S- 0 0 36 -3,-1.1 46,-1.7 45,-0.2 45,-0.4 0.388 81.2 -89.9 -82.6-145.3 -8.9 21.3 45.1 18 476 A A - 0 0 53 43,-0.2 2,-0.5 44,-0.2 43,-0.2 -0.995 28.1-143.9-134.1 135.4 -6.0 20.0 43.1 19 477 A A E - B 0 60A 0 41,-2.4 41,-2.8 -2,-0.4 2,-0.6 -0.875 9.4-160.6 -98.6 127.7 -2.5 19.5 44.5 20 478 A T E - B 0 59A 38 -2,-0.5 2,-0.5 39,-0.2 39,-0.2 -0.916 4.5-166.9-110.6 107.3 0.5 20.3 42.2 21 479 A L E - B 0 58A 5 37,-3.0 37,-2.7 -2,-0.6 2,-0.4 -0.823 13.6-171.5 -93.3 123.9 3.7 18.6 43.2 22 480 A R E + B 0 57A 157 -2,-0.5 -13,-0.5 35,-0.2 2,-0.3 -0.941 15.4 157.9-124.4 137.2 6.7 20.1 41.4 23 481 A C E - B 0 56A 4 33,-2.0 33,-3.2 -2,-0.4 2,-0.4 -0.922 25.9-131.2-144.4 173.4 10.4 19.2 41.1 24 482 A V E -AB 6 55A 35 -18,-2.3 -18,-2.0 -2,-0.3 -19,-1.2 -0.990 7.7-146.5-135.7 134.5 13.3 19.8 38.7 25 483 A L E -A 4 0A 4 29,-2.4 -21,-0.2 -2,-0.4 29,-0.1 -0.543 27.2-119.1 -90.6 162.1 15.9 17.6 37.0 26 484 A S S S+ 0 0 52 -23,-2.1 2,-0.3 -2,-0.2 -22,-0.1 0.594 97.2 5.9 -77.9 -14.2 19.5 18.7 36.1 27 485 A S S S- 0 0 57 -24,-0.2 2,-0.9 27,-0.1 -1,-0.1 -0.967 96.8 -77.6-155.9 169.1 18.7 18.1 32.5 28 486 A V + 0 0 106 -2,-0.3 2,-0.3 -3,-0.1 26,-0.2 -0.603 69.9 147.3 -72.5 105.2 15.8 17.2 30.2 29 487 A A - 0 0 18 -2,-0.9 3,-0.1 24,-0.3 -4,-0.1 -0.962 28.2-115.5-140.4 158.2 15.4 13.4 30.8 30 488 A A + 0 0 64 -2,-0.3 2,-0.1 1,-0.2 45,-0.0 -0.973 61.9 27.6-162.1 161.6 12.6 10.8 30.9 31 489 A P - 0 0 111 0, 0.0 45,-0.3 0, 0.0 2,-0.3 0.545 56.7-178.2 -88.2 150.1 10.7 8.8 32.0 32 490 A V - 0 0 21 -3,-0.1 2,-0.4 43,-0.1 43,-0.2 -0.695 18.2-136.7 -97.5 158.9 10.4 9.6 35.7 33 491 A K E -E 74 0B 54 41,-2.6 41,-2.6 -2,-0.3 2,-0.4 -0.967 11.4-156.1-116.3 135.4 8.3 7.5 38.1 34 492 A W E -E 73 0B 2 -2,-0.4 7,-2.7 7,-0.3 2,-0.3 -0.874 13.2-169.1-106.7 144.8 6.0 9.0 40.7 35 493 A C E -EF 72 40B 20 37,-2.7 37,-2.1 -2,-0.4 2,-0.5 -0.965 25.3-151.9-133.1 148.7 5.0 7.2 43.9 36 494 A Y E > S-EF 71 39B 69 3,-2.8 3,-2.3 -2,-0.3 2,-0.3 -0.980 85.5 -42.6-113.9 113.8 2.5 7.5 46.7 37 495 A G T 3 S- 0 0 38 33,-2.6 35,-0.1 -2,-0.5 32,-0.0 -0.541 126.0 -28.5 58.8-123.5 4.3 5.7 49.6 38 496 A N T 3 S+ 0 0 168 -2,-0.3 2,-0.6 -3,-0.1 -1,-0.3 0.341 117.1 107.2 -98.4 6.5 5.7 2.6 47.8 39 497 A N E < -F 36 0B 103 -3,-2.3 -3,-2.8 1,-0.0 2,-0.3 -0.768 67.2-136.3 -92.4 118.8 2.9 2.6 45.2 40 498 A V E -F 35 0B 79 -2,-0.6 -5,-0.3 -5,-0.2 2,-0.2 -0.581 27.1-127.1 -75.9 128.4 3.9 3.6 41.7 41 499 A L - 0 0 12 -7,-2.7 -7,-0.3 -2,-0.3 -1,-0.1 -0.470 13.2-146.9 -84.0 146.1 1.3 5.9 40.2 42 500 A R - 0 0 201 -2,-0.2 5,-0.4 6,-0.0 4,-0.1 -0.917 27.5-109.7-107.7 135.2 -0.5 5.5 36.9 43 501 A P + 0 0 95 0, 0.0 2,-0.2 0, 0.0 5,-0.2 -0.440 69.2 114.0 -59.3 134.0 -1.6 8.5 34.8 44 502 A G S S- 0 0 39 3,-2.9 5,-0.1 -2,-0.1 -3,-0.0 -0.798 81.7 -48.8-168.6-150.6 -5.4 8.6 35.0 45 503 A D S S+ 0 0 154 -2,-0.2 16,-0.2 1,-0.1 3,-0.1 0.851 133.6 43.1 -74.1 -35.2 -8.4 10.6 36.3 46 504 A K S S+ 0 0 46 1,-0.2 15,-2.6 -4,-0.1 2,-0.4 0.918 119.3 36.7 -75.7 -48.2 -6.8 10.9 39.7 47 505 A Y E -C 60 0A 38 -5,-0.4 -3,-2.9 13,-0.2 2,-0.5 -0.914 59.1-167.2-115.6 134.4 -3.2 11.7 38.7 48 506 A S E -C 59 0A 23 11,-2.2 11,-2.8 -2,-0.4 2,-0.6 -0.988 10.7-157.7-117.2 122.0 -1.8 13.7 35.9 49 507 A L E +C 58 0A 57 -2,-0.5 2,-0.3 9,-0.2 9,-0.2 -0.901 20.2 178.8-103.8 115.6 1.9 13.3 35.2 50 508 A R E -C 57 0A 116 7,-3.0 7,-2.2 -2,-0.6 2,-0.4 -0.862 15.8-166.7-123.1 149.4 3.3 16.3 33.3 51 509 A Q E +C 56 0A 79 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -1.000 10.5 178.5-137.0 137.0 6.7 17.3 32.0 52 510 A E E > -C 55 0A 92 3,-2.8 3,-1.8 -2,-0.4 2,-0.5 -0.744 69.8 -66.4-134.2 85.4 8.0 20.7 30.7 53 511 A G T 3 S- 0 0 36 1,-0.3 -24,-0.3 -2,-0.3 -26,-0.1 -0.607 119.3 -13.1 70.7-117.5 11.7 20.3 29.9 54 512 A A T 3 S+ 0 0 23 -2,-0.5 -29,-2.4 -26,-0.2 2,-0.4 0.547 117.2 101.0 -89.4 -10.6 13.4 19.6 33.2 55 513 A X E < -BC 24 52A 123 -3,-1.8 -3,-2.8 -31,-0.2 2,-0.4 -0.646 57.3-163.2 -78.9 127.8 10.4 20.7 35.2 56 514 A L E -BC 23 51A 2 -33,-3.2 -33,-2.0 -2,-0.4 2,-0.4 -0.900 7.6-175.4-115.1 142.1 8.3 17.8 36.5 57 515 A E E -BC 22 50A 45 -7,-2.2 -7,-3.0 -2,-0.4 2,-0.5 -0.998 15.0-167.2-144.1 131.5 4.8 18.1 37.8 58 516 A L E -BC 21 49A 0 -37,-2.7 -37,-3.0 -2,-0.4 2,-0.6 -0.987 11.9-159.9-117.7 122.7 2.2 15.7 39.4 59 517 A V E -BC 20 48A 9 -11,-2.8 -11,-2.2 -2,-0.5 2,-0.7 -0.899 2.3-164.8-103.3 122.8 -1.4 16.9 39.6 60 518 A V E -BC 19 47A 0 -41,-2.8 -41,-2.4 -2,-0.6 3,-0.3 -0.932 18.9-158.3-106.1 105.8 -3.5 15.2 42.2 61 519 A R + 0 0 78 -15,-2.6 -43,-0.2 -2,-0.7 3,-0.2 -0.400 63.0 19.6 -87.7 162.4 -7.1 16.0 41.3 62 520 A N S S- 0 0 122 -45,-0.4 -1,-0.2 -46,-0.3 -44,-0.2 0.912 87.4-142.3 44.9 58.6 -10.2 16.0 43.5 63 521 A L + 0 0 3 -46,-1.7 -47,-3.0 -3,-0.3 -1,-0.2 -0.249 26.9 175.6 -57.1 126.0 -8.2 16.1 46.8 64 522 A R > - 0 0 111 -49,-0.2 3,-1.8 -3,-0.2 4,-0.3 -0.837 46.2-106.9-119.3 160.8 -9.6 14.0 49.6 65 523 A P G > S+ 0 0 61 0, 0.0 3,-1.6 0, 0.0 21,-0.2 0.832 120.1 62.7 -56.3 -32.5 -7.9 13.5 53.1 66 524 A Q G 3 S+ 0 0 129 1,-0.3 -3,-0.0 3,-0.0 0, 0.0 0.574 93.3 64.0 -67.7 -13.1 -7.1 9.9 52.0 67 525 A D G < S+ 0 0 3 -3,-1.8 -1,-0.3 -5,-0.1 17,-0.1 0.540 84.1 101.0 -85.6 -10.5 -4.9 11.5 49.2 68 526 A S < + 0 0 43 -3,-1.6 2,-0.3 -4,-0.3 17,-0.2 -0.352 51.2 71.6 -73.5 156.6 -2.6 13.0 51.8 69 527 A G E S- G 0 84B 27 15,-2.2 15,-3.1 -2,-0.1 2,-0.5 -0.901 84.3 -19.0 136.4-160.5 0.8 11.4 52.7 70 528 A R E - G 0 83B 126 -2,-0.3 -33,-2.6 13,-0.2 2,-0.3 -0.677 50.7-176.1 -90.3 127.4 4.2 11.0 51.2 71 529 A Y E -EG 36 82B 0 11,-2.6 11,-2.4 -2,-0.5 2,-0.3 -0.879 5.1-170.8-115.0 153.7 4.8 11.3 47.5 72 530 A S E -EG 35 81B 27 -37,-2.1 -37,-2.7 -2,-0.3 2,-0.4 -0.972 14.6-151.3-143.1 153.2 8.1 10.7 45.7 73 531 A C E -EG 34 80B 0 7,-2.7 7,-2.5 -2,-0.3 2,-0.4 -0.978 19.2-172.3-125.6 141.1 9.7 11.1 42.2 74 532 A S E -EG 33 79B 32 -41,-2.6 -41,-2.6 -2,-0.4 2,-0.4 -0.995 16.6-179.2-139.3 139.2 12.4 8.9 40.9 75 533 A F E > - G 0 78B 43 3,-2.6 3,-2.6 -2,-0.4 2,-0.2 -0.957 69.1 -47.9-137.5 120.3 14.7 8.8 37.9 76 534 A G T 3 S- 0 0 76 -2,-0.4 0, 0.0 -45,-0.3 0, 0.0 -0.434 126.0 -19.3 58.1-118.5 17.2 5.9 37.5 77 535 A D T 3 S+ 0 0 127 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.477 120.5 96.2 -93.3 -6.2 18.9 5.7 40.9 78 536 A Q E < + G 0 75B 50 -3,-2.6 -3,-2.6 -76,-0.2 2,-0.3 -0.644 48.9 175.6 -94.2 141.5 17.9 9.2 42.0 79 537 A T E - G 0 74B 99 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.977 15.2-170.4-141.0 154.7 14.8 10.0 44.1 80 538 A T E - G 0 73B 15 -7,-2.5 -7,-2.7 -2,-0.3 2,-0.3 -0.969 14.2-175.0-139.7 155.0 13.2 13.0 45.8 81 539 A S E + G 0 72B 41 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.999 11.4 161.3-154.4 146.4 10.3 13.0 48.3 82 540 A A E - G 0 71B 4 -11,-2.4 -11,-2.6 -2,-0.3 2,-0.4 -0.945 32.9-104.4-154.3 173.6 7.9 15.2 50.2 83 541 A T E - G 0 70B 41 -2,-0.3 -72,-2.3 -13,-0.2 2,-0.5 -0.845 15.2-147.3-110.7 146.5 4.5 15.1 52.1 84 542 A L E -dG 11 69B 2 -15,-3.1 -15,-2.2 -2,-0.4 2,-0.5 -0.948 13.5-162.8-106.8 122.3 1.1 16.4 51.1 85 543 A T E -d 12 0B 69 -74,-3.1 -72,-2.7 -2,-0.5 2,-0.5 -0.912 5.5-153.6-104.9 131.1 -1.1 17.6 53.9 86 544 A V E -d 13 0B 24 -2,-0.5 2,-0.4 -74,-0.2 -72,-0.2 -0.921 5.4-155.7-108.7 127.5 -4.8 18.0 53.3 87 545 A T E -d 14 0B 49 -74,-2.4 -72,-2.7 -2,-0.5 2,-0.0 -0.868 23.7-112.2-104.9 133.7 -6.8 20.5 55.3 88 546 A A - 0 0 72 -2,-0.4 -24,-0.0 -74,-0.2 -1,-0.0 -0.330 31.5-117.7 -64.6 141.5 -10.6 20.1 55.8 89 547 A L 0 0 100 1,-0.1 -1,-0.1 -75,-0.1 -73,-0.0 -0.652 360.0 360.0 -81.2 133.7 -12.8 22.7 54.1 90 548 A P 0 0 164 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.985 360.0 360.0 -64.0 360.0 -15.0 24.9 56.3