==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 02-MAR-05 1Z0Q . COMPND 2 MOLECULE: ALZHEIMER'S DISEASE AMYLOID; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.TOMASELLI,V.ESPOSITO,P.VANGONE,N.A.VAN NULAND,A.M.BONVIN, . 42 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4078.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 47.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 185 0, 0.0 2,-0.1 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 130.3 -18.8 -5.8 1.2 2 2 A A - 0 0 56 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.241 360.0-105.8-133.8-138.4 -18.8 -6.0 -2.6 3 3 A E S S- 0 0 143 -2,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.568 100.1 -7.2-131.2 -45.5 -16.3 -5.1 -5.4 4 4 A F S > S+ 0 0 150 3,-0.1 4,-2.2 2,-0.1 8,-0.1 0.653 125.9 62.6-123.2 -47.6 -17.6 -1.9 -7.0 5 5 A R T 4 S+ 0 0 235 2,-0.2 0, 0.0 1,-0.1 0, 0.0 0.704 121.9 29.9 -55.7 -19.3 -21.0 -1.1 -5.5 6 6 A H T 4 S+ 0 0 97 3,-0.0 4,-0.2 4,-0.0 5,-0.2 0.831 114.3 52.9-102.1 -71.7 -19.0 -0.8 -2.3 7 7 A D T >> S+ 0 0 73 3,-0.1 4,-4.3 2,-0.1 3,-1.5 0.756 95.5 102.5 -37.0 -28.3 -15.5 0.3 -3.0 8 8 A S T 3< + 0 0 62 -4,-2.2 3,-0.0 1,-0.2 -3,-0.0 -0.129 66.3 41.2 -57.2 156.7 -17.4 3.0 -4.8 9 9 A G T 34 S+ 0 0 52 1,-0.2 -1,-0.2 0, 0.0 -2,-0.1 0.014 136.5 18.4 91.6 -26.9 -17.7 6.4 -3.2 10 10 A Y T <> S+ 0 0 118 -3,-1.5 4,-4.8 -4,-0.2 5,-0.2 0.506 113.0 67.6-138.3 -44.6 -14.1 6.2 -2.1 11 11 A E H X S+ 0 0 70 -4,-4.3 4,-1.8 1,-0.3 5,-0.2 0.956 106.9 40.8 -45.9 -73.3 -12.3 3.6 -4.2 12 12 A V H 4 S+ 0 0 109 1,-0.2 -1,-0.3 2,-0.2 -4,-0.1 0.766 124.5 46.1 -48.2 -26.2 -12.5 5.5 -7.5 13 13 A H H >4 S+ 0 0 115 2,-0.2 3,-7.7 1,-0.1 -2,-0.3 0.972 98.6 61.7 -79.7 -72.2 -11.7 8.4 -5.3 14 14 A H H >X S+ 0 0 137 -4,-4.8 3,-1.8 1,-0.4 4,-1.4 0.746 93.4 68.2 -19.0 -58.0 -8.8 7.2 -3.1 15 15 A Q H 3X + 0 0 103 -4,-1.8 4,-0.8 1,-0.3 -1,-0.4 0.678 67.7 110.2 -42.1 -17.4 -6.9 6.7 -6.3 16 16 A K H <4 S- 0 0 148 -3,-7.7 -1,-0.3 1,-0.2 -2,-0.2 0.793 111.1 -13.2 -26.4 -49.1 -7.1 10.5 -6.2 17 17 A L H X>>S+ 0 0 106 -3,-1.8 3,-6.1 -4,-0.1 4,-1.3 0.546 119.6 92.2-128.1 -31.2 -3.4 10.3 -5.5 18 18 A V H 3X>S+ 0 0 38 -4,-1.4 4,-5.1 1,-0.3 5,-0.8 0.851 82.2 61.2 -30.8 -61.9 -2.9 6.6 -4.7 19 19 A F H 3<5S+ 0 0 106 -4,-0.8 -1,-0.3 3,-0.2 4,-0.1 0.710 117.9 33.6 -41.7 -22.3 -2.2 6.0 -8.4 20 20 A F H <>5S+ 0 0 126 -3,-6.1 4,-2.7 -5,-0.3 3,-0.3 0.875 126.3 33.9 -98.1 -68.1 0.7 8.4 -7.7 21 21 A A H <5S+ 0 0 59 -4,-1.3 5,-0.5 1,-0.3 -3,-0.2 0.779 120.9 55.4 -60.0 -26.8 1.8 7.8 -4.1 22 22 A E T < S+ 0 0 40 1,-0.3 3,-2.1 2,-0.2 -1,-0.3 0.821 100.9 69.1 -49.9 -34.7 11.5 0.9 -5.2 30 30 A A G 3 S+ 0 0 70 1,-0.3 -1,-0.3 -5,-0.1 -2,-0.2 0.552 92.6 62.2 -62.5 -5.2 10.1 -2.4 -6.5 31 31 A I G < S+ 0 0 52 -3,-3.4 -1,-0.3 -4,-0.2 4,-0.3 0.702 98.2 66.0 -91.0 -25.0 12.5 -1.6 -9.4 32 32 A I S < S+ 0 0 105 -3,-2.1 2,-2.1 -4,-0.4 3,-0.0 -0.169 99.9 19.1 -86.3-176.2 15.5 -1.7 -7.2 33 33 A G S S+ 0 0 42 1,-0.3 4,-0.1 2,-0.1 -3,-0.1 -0.313 115.3 64.6 56.8 -82.0 17.0 -4.7 -5.4 34 34 A L S S+ 0 0 172 -2,-2.1 -1,-0.3 1,-0.3 -2,-0.1 0.778 115.0 36.5 -37.4 -31.9 15.3 -7.2 -7.6 35 35 A M S > S- 0 0 44 -4,-0.3 3,-1.0 3,-0.1 -1,-0.3 0.888 76.4-178.0 -89.0 -48.5 17.4 -5.7 -10.2 36 36 A V T 3 S- 0 0 138 1,-0.3 -2,-0.1 2,-0.1 -4,-0.1 0.287 83.3 -55.2 65.7 -15.0 20.6 -5.0 -8.2 37 37 A G T 3 S+ 0 0 60 -4,-0.1 -1,-0.3 -5,-0.0 -2,-0.1 0.665 114.2 109.3 115.7 34.9 21.7 -3.5 -11.5 38 38 A G S < S+ 0 0 54 -3,-1.0 -2,-0.1 -4,-0.0 -3,-0.1 0.612 89.1 3.7-100.4-108.0 21.2 -6.4 -13.9 39 39 A V S S- 0 0 126 -4,-0.2 -4,-0.1 1,-0.1 -3,-0.1 0.678 96.2-170.5 -55.4 -16.2 18.5 -6.4 -16.5 40 40 A V - 0 0 77 -5,-0.2 -1,-0.1 -9,-0.1 -8,-0.0 0.142 43.4 -11.1 47.5-173.9 17.9 -2.9 -15.2 41 41 A I 0 0 105 -3,-0.1 -10,-0.0 -4,-0.0 0, 0.0 0.103 360.0 360.0 -43.0 164.5 14.8 -1.1 -16.3 42 42 A A 0 0 130 0, 0.0 -3,-0.1 0, 0.0 -2,-0.0 -0.231 360.0 360.0 48.1 360.0 12.9 -2.6 -19.2