==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 21-MAR-05 1Z60 . COMPND 2 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX P44 . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.KELLENBERGER,C.DOMINGUEZ,S.FRIBOURG,E.WASIELEWSKI,D.MORAS, . 59 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4167.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 42.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 15.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 11.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 328 A L 0 0 115 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 142.2 2.4 -8.0 3.3 2 329 A D - 0 0 118 1,-0.4 32,-0.4 36,-0.1 3,-0.2 -0.519 360.0 -9.4-143.9-160.8 0.3 -7.9 6.3 3 330 A A S S- 0 0 69 -2,-0.2 -1,-0.4 1,-0.2 30,-0.1 0.048 95.4 -57.1 -55.5 160.6 -1.2 -5.3 8.6 4 331 A F + 0 0 122 -3,-0.1 2,-0.3 27,-0.1 -1,-0.2 -0.014 66.6 158.3 -55.5 128.4 -0.2 -1.7 8.3 5 332 A Q - 0 0 110 27,-0.2 27,-1.1 -3,-0.2 2,-0.7 -0.950 41.4-137.6-139.6 148.9 3.3 -0.9 8.7 6 333 A E E -A 31 0A 91 -2,-0.3 25,-0.2 25,-0.2 3,-0.0 -0.979 34.6-166.2-104.7 110.0 5.5 1.8 7.7 7 334 A I E -A 30 0A 22 23,-2.7 23,-2.9 -2,-0.7 2,-0.1 -0.738 23.8-109.2 -99.0 137.2 8.4 -0.1 6.5 8 335 A P E > -A 29 0A 34 0, 0.0 4,-1.8 0, 0.0 3,-0.3 -0.457 23.0-124.2 -63.8 147.7 11.7 1.6 5.9 9 336 A L H > S+ 0 0 58 19,-0.6 4,-0.7 1,-0.2 5,-0.2 0.824 111.2 63.0 -58.4 -33.3 12.6 1.8 2.4 10 337 A E H 4 S+ 0 0 163 1,-0.2 -1,-0.2 2,-0.1 3,-0.2 0.908 107.7 37.1 -59.1 -51.0 15.7 -0.0 3.3 11 338 A E H 4 S+ 0 0 128 -3,-0.3 -1,-0.2 1,-0.2 -2,-0.2 0.863 99.4 77.8 -69.9 -37.5 14.0 -3.2 4.5 12 339 A Y H < + 0 0 40 -4,-1.8 -1,-0.2 1,-0.1 3,-0.1 0.758 53.4 180.0 -60.5 -45.0 11.3 -3.5 2.1 13 340 A N < + 0 0 155 -4,-0.7 2,-0.2 1,-0.2 -1,-0.1 0.827 60.1 80.7 53.3 41.4 13.0 -4.9 -1.2 14 341 A G S S+ 0 0 30 -5,-0.2 2,-0.4 1,-0.1 -1,-0.2 -0.507 78.8 2.5-153.8-159.3 9.5 -4.8 -2.8 15 342 A E - 0 0 126 -2,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 -0.304 53.3-164.0 -59.2 108.8 6.8 -2.9 -4.4 16 343 A R + 0 0 167 -2,-0.4 9,-2.6 14,-0.1 10,-0.5 0.430 53.9 59.7 -60.4 -27.8 7.9 0.6 -4.8 17 344 A F E S-C 24 0B 92 7,-0.3 7,-0.3 8,-0.2 2,-0.2 -0.845 74.1-116.2-121.1 157.9 5.0 2.7 -5.6 18 345 A C E >> -C 23 0B 1 5,-2.6 4,-1.2 -2,-0.3 5,-0.9 -0.595 27.9-130.2 -81.6 150.5 1.7 3.7 -3.9 19 346 A Y T 45S+ 0 0 75 20,-1.9 -1,-0.1 -2,-0.2 21,-0.1 0.939 100.7 61.1 -67.1 -37.2 -1.3 2.5 -6.0 20 347 A G T 45S+ 0 0 25 1,-0.2 -1,-0.1 2,-0.1 20,-0.1 0.894 115.8 26.6 -58.1 -52.2 -3.0 6.0 -5.8 21 348 A C T 45S- 0 0 69 2,-0.2 -1,-0.2 3,-0.0 -2,-0.1 0.835 94.6-134.1 -69.7 -32.1 -0.3 8.1 -7.6 22 349 A Q T <5S+ 0 0 172 -4,-1.2 2,-0.3 1,-0.4 -3,-0.2 0.891 79.4 111.4 57.7 46.3 0.9 5.1 -9.5 23 350 A G E + 0 0 3 -9,-2.6 3,-0.9 1,-0.2 17,-0.5 0.711 67.2 109.6 -62.4 -27.4 6.4 5.4 -2.0 26 353 A K T 3 + 0 0 115 -10,-0.5 -1,-0.2 1,-0.2 -17,-0.1 0.300 36.7 95.2 -49.7 -21.3 9.9 6.7 -1.6 27 354 A D T 3 S- 0 0 124 -3,-0.4 -1,-0.2 -2,-0.1 3,-0.1 0.842 117.1 -44.3 -49.4 -38.1 9.6 10.1 0.4 28 355 A Q S < S+ 0 0 107 -3,-0.9 -19,-0.6 1,-0.5 2,-0.3 0.378 114.7 24.8-157.3 -47.6 10.2 8.4 3.7 29 356 A H E -A 8 0A 48 -4,-0.4 -1,-0.5 -21,-0.2 2,-0.5 -0.836 59.7-120.3-131.1 168.1 8.4 5.1 4.2 30 357 A V E -A 7 0A 1 -23,-2.9 -23,-2.7 -2,-0.3 2,-0.4 -0.902 33.3-166.3-104.6 131.2 6.7 2.2 2.7 31 358 A Y E -AB 6 40A 36 9,-1.6 9,-3.4 -2,-0.5 2,-0.4 -0.902 3.5-166.4-120.1 143.8 3.1 1.8 3.6 32 359 A V - 0 0 2 -27,-1.1 2,-0.5 -2,-0.4 7,-0.3 -0.993 18.6-163.8-128.4 145.0 0.9 -1.1 3.1 33 360 A C > > - 0 0 0 -2,-0.4 3,-1.3 3,-0.3 5,-1.1 -0.844 9.6-177.2-111.7 104.3 -2.9 -1.7 3.3 34 361 A A T 3 5S+ 0 0 41 -2,-0.5 3,-0.3 -32,-0.4 -1,-0.1 0.788 87.2 59.6 -65.5 -18.9 -3.2 -5.5 3.5 35 362 A V T 3 5S+ 0 0 105 1,-0.3 2,-0.3 -33,-0.1 -1,-0.3 0.835 118.4 25.1 -71.5 -37.7 -6.8 -4.8 3.4 36 363 A C T < 5S- 0 0 10 -3,-1.3 2,-1.5 23,-0.0 -1,-0.3 -0.871 127.6 -52.0-148.5 107.8 -6.5 -3.2 0.1 37 364 A Q T 5S- 0 0 81 -2,-0.3 -3,-0.1 -3,-0.3 -2,-0.0 0.067 78.8-129.8 56.2 -19.8 -3.7 -3.7 -2.6 38 365 A N < + 0 0 45 -2,-1.5 2,-0.4 -5,-1.1 -1,-0.3 0.242 68.0 101.1 71.5 14.1 -1.6 -3.2 0.0 39 366 A V + 0 0 7 -7,-0.3 -20,-1.9 -6,-0.1 -7,-0.3 -0.955 42.1 175.6-129.0 130.0 1.1 -0.5 -0.9 40 367 A F B -B 31 0A 11 -9,-3.4 -9,-1.6 -2,-0.4 2,-0.2 -0.865 22.5-144.7-127.5 160.9 1.1 3.3 0.1 41 368 A C > - 0 0 3 -2,-0.3 4,-1.0 -11,-0.1 -16,-0.1 -0.613 39.7-109.1-106.0 169.1 2.9 6.7 0.1 42 369 A V H > S+ 0 0 43 -17,-0.5 4,-0.9 -2,-0.2 3,-0.4 0.834 124.0 53.2 -68.0 -30.8 2.9 9.2 2.7 43 370 A D H > S+ 0 0 75 1,-0.2 4,-0.8 2,-0.2 3,-0.5 0.928 106.3 60.2 -60.3 -44.0 0.6 11.3 0.3 44 371 A C H 4 S+ 0 0 0 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.677 89.8 58.0 -66.9 -30.0 -1.5 8.4 0.1 45 372 A D H < S+ 0 0 107 -4,-1.0 3,-0.5 -3,-0.4 -1,-0.2 0.923 115.4 42.8 -61.7 -41.7 -2.6 7.9 3.7 46 373 A V H >< S+ 0 0 91 -4,-0.9 3,-1.6 -3,-0.5 4,-0.4 0.669 90.7 95.4 -67.0 -19.9 -4.0 11.4 3.5 47 374 A F T 3< S+ 0 0 84 -4,-0.8 4,-0.4 1,-0.3 3,-0.3 0.768 83.9 47.9 -50.2 -41.0 -5.4 10.7 -0.1 48 375 A V T 3> S+ 0 0 2 -3,-0.5 4,-2.0 -4,-0.4 -1,-0.3 0.728 80.8 91.8 -72.9 -32.1 -8.8 9.8 1.2 49 376 A H T <4 S+ 0 0 138 -3,-1.6 -1,-0.2 -4,-0.2 -2,-0.1 0.738 105.3 8.1 -55.7 -41.9 -9.9 12.5 3.7 50 377 A D T 4 S+ 0 0 153 -4,-0.4 -1,-0.2 -3,-0.3 -2,-0.1 0.870 134.3 39.3 -94.2 -66.0 -11.8 14.9 1.4 51 378 A S T 4 S+ 0 0 95 -4,-0.4 -2,-0.2 2,-0.0 -3,-0.2 0.719 119.7 5.5 -59.1 -34.9 -12.1 13.2 -1.9 52 379 A L S < S- 0 0 80 -4,-2.0 2,-0.2 1,-0.3 -4,-0.1 0.524 88.6 -47.5-116.9-109.4 -12.8 9.6 -1.1 53 380 A H - 0 0 73 2,-0.3 -1,-0.3 0, 0.0 4,-0.1 -0.567 66.0 -78.7-137.3 172.6 -13.5 7.1 1.7 54 381 A S S S+ 0 0 111 -2,-0.2 -6,-0.2 2,-0.1 -5,-0.1 0.835 123.9 14.4 -57.3 -35.0 -11.9 6.4 5.1 55 382 A C S S- 0 0 25 1,-0.2 -2,-0.3 -7,-0.1 4,-0.3 -0.878 77.2-134.3-130.1 162.0 -9.2 4.5 3.1 56 383 A P S > S+ 0 0 12 0, 0.0 3,-1.0 0, 0.0 -1,-0.2 0.948 99.1 38.0 -79.2 -64.4 -8.5 4.7 -0.7 57 384 A G T 3 S+ 0 0 19 1,-0.2 -20,-0.1 -21,-0.2 -24,-0.0 0.610 93.2 86.8 -57.7 -28.1 -8.1 1.1 -1.7 58 385 A C T 3 0 0 51 1,-0.3 -1,-0.2 -22,-0.1 -21,-0.1 0.836 360.0 360.0 -58.5 -35.3 -10.7 -0.3 0.5 59 386 A I < 0 0 165 -3,-1.0 -1,-0.3 -4,-0.3 -2,-0.2 0.912 360.0 360.0 -64.2 360.0 -13.7 0.2 -1.9