==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 21-MAR-05 1Z65 . COMPND 2 MOLECULE: PRION-LIKE PROTEIN DOPPEL; . SOURCE 2 SYNTHETIC: YES; . AUTHOR E.PAPADOPOULOS . 30 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3414.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 30.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 226 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 44.0 2.1 0.0 -1.2 2 2 A K + 0 0 204 1,-0.1 4,-0.0 4,-0.0 0, 0.0 0.965 360.0 99.2 50.6 85.0 4.8 -2.4 -0.0 3 3 A N S S+ 0 0 159 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.214 94.4 6.6-154.7 -65.9 6.6 -0.2 2.4 4 4 A R S S+ 0 0 185 2,-0.0 4,-0.4 3,-0.0 3,-0.3 0.681 109.9 90.5-102.4 -27.3 5.7 -0.7 6.1 5 5 A L + 0 0 108 1,-0.2 2,-0.4 2,-0.1 0, 0.0 0.240 42.4 97.2 -54.6-170.7 3.5 -3.7 5.5 6 6 A G S S+ 0 0 41 1,-0.1 4,-0.4 -4,-0.0 -1,-0.2 -0.773 102.3 5.2 128.1 -86.2 4.9 -7.3 5.6 7 7 A T S > S+ 0 0 97 -2,-0.4 4,-2.8 -3,-0.3 5,-0.3 0.584 105.1 91.0-105.8 -18.6 4.4 -8.9 8.9 8 8 A W H > S+ 0 0 151 -4,-0.4 4,-0.5 1,-0.3 -1,-0.1 0.848 101.4 35.9 -44.3 -38.2 2.3 -6.1 10.4 9 9 A W H >> S+ 0 0 127 2,-0.2 4,-2.0 1,-0.2 3,-1.3 0.878 108.1 63.8 -82.2 -43.1 -0.6 -8.1 9.0 10 10 A V H 3> S+ 0 0 56 -4,-0.4 4,-0.6 1,-0.3 -2,-0.2 0.792 102.2 53.9 -50.1 -29.2 1.0 -11.4 9.8 11 11 A A H 3X S+ 0 0 37 -4,-2.8 4,-0.7 2,-0.2 -1,-0.3 0.830 102.7 56.3 -74.5 -33.8 0.7 -10.3 13.4 12 12 A I H XX S+ 0 0 85 -3,-1.3 4,-4.2 -4,-0.5 3,-0.8 0.938 107.8 46.3 -62.2 -48.9 -3.0 -9.7 12.9 13 13 A L H 3< S+ 0 0 106 -4,-2.0 4,-0.3 1,-0.3 -1,-0.2 0.723 117.3 45.8 -65.5 -21.2 -3.6 -13.2 11.8 14 14 A C H 3< S+ 0 0 92 -4,-0.6 -1,-0.3 -5,-0.3 -2,-0.3 0.517 117.6 44.6 -96.0 -10.2 -1.4 -14.2 14.7 15 15 A M H S+ 0 0 76 -5,-0.4 4,-3.3 -4,-0.3 -1,-0.2 0.728 98.8 79.7 -93.4 -28.6 -6.0 -16.3 16.4 18 18 A A H >4 S+ 0 0 31 2,-0.2 3,-1.6 1,-0.2 6,-0.2 0.924 100.8 34.7 -40.0 -79.5 -4.1 -15.6 19.5 19 19 A S H ><>S+ 0 0 62 -4,-0.9 5,-3.1 1,-0.3 3,-2.9 0.892 116.3 57.4 -43.3 -50.4 -7.0 -15.4 21.8 20 20 A H H 3<5S+ 0 0 102 -4,-0.5 -1,-0.3 1,-0.3 -2,-0.2 0.853 118.1 33.5 -50.2 -38.1 -8.8 -18.0 19.7 21 21 A L T <<5S+ 0 0 82 -4,-3.3 -1,-0.3 -3,-1.6 -2,-0.2 -0.203 130.9 35.9-111.3 38.3 -5.8 -20.2 20.5 22 22 A S T X 5S+ 0 0 74 -3,-2.9 3,-0.7 -5,-0.1 -3,-0.2 0.172 129.5 9.4-144.7 -89.9 -5.3 -18.8 24.0 23 23 A T T 3 5S+ 0 0 130 1,-0.2 -3,-0.2 3,-0.0 -4,-0.1 0.732 120.4 68.4 -75.9 -23.9 -8.1 -17.7 26.2 24 24 A V T 3