==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 17-SEP-92 1ZAA . COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.P.PAVLETICH,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6834.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 61.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 31.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 C R 0 0 180 0, 0.0 14,-0.3 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 65.8 -13.6 8.1 60.3 2 4 C P + 0 0 91 0, 0.0 2,-0.6 0, 0.0 13,-0.2 0.351 360.0 82.6 -81.1 2.3 -14.4 4.9 62.2 3 5 C Y E -A 14 0A 92 11,-2.0 11,-3.4 13,-0.1 2,-0.3 -0.956 61.6-172.5-113.6 120.3 -10.8 3.8 62.3 4 6 C A E -A 13 0A 36 -2,-0.6 9,-0.3 9,-0.3 8,-0.1 -0.857 30.8-112.1-112.7 146.8 -8.7 5.3 65.0 5 7 C C - 0 0 10 7,-3.5 5,-0.0 -2,-0.3 -2,-0.0 -0.645 23.1-152.5 -76.9 121.1 -5.0 5.0 65.5 6 8 C P + 0 0 104 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 0.408 60.8 115.4 -71.9 -2.4 -4.5 2.9 68.8 7 9 C V > - 0 0 31 1,-0.1 3,-1.5 2,-0.0 -2,-0.1 -0.639 69.1-139.1 -73.8 114.3 -1.2 4.5 69.5 8 10 C E T 3 S+ 0 0 191 -2,-0.7 -1,-0.1 1,-0.3 3,-0.0 0.427 101.3 49.4 -55.4 0.3 -1.9 6.4 72.8 9 11 C S T 3 S+ 0 0 101 0, 0.0 -1,-0.3 0, 0.0 2,-0.3 0.632 98.1 81.9-108.4 -28.5 0.2 9.4 71.4 10 12 C C < - 0 0 20 -3,-1.5 -6,-0.0 1,-0.1 0, 0.0 -0.587 53.7-166.3 -87.9 143.7 -1.5 9.6 68.1 11 13 C D + 0 0 121 -2,-0.3 -1,-0.1 -7,-0.1 -3,-0.0 0.551 41.2 130.9-100.6 -18.8 -4.8 11.4 67.3 12 14 C R - 0 0 104 -8,-0.1 -7,-3.5 11,-0.0 2,-0.3 -0.073 29.9-175.5 -54.9 142.9 -5.6 10.1 63.8 13 15 C R E -A 4 0A 132 -9,-0.3 2,-0.3 -11,-0.0 -9,-0.3 -0.973 10.8-163.8-132.6 138.4 -9.0 8.6 62.5 14 16 C F E -A 3 0A 26 -11,-3.4 -11,-2.0 -2,-0.3 6,-0.0 -0.921 26.4-135.1-131.2 157.4 -9.6 7.2 59.0 15 17 C S S S+ 0 0 68 -2,-0.3 2,-0.3 -14,-0.3 -1,-0.1 0.827 89.3 35.0 -75.7 -38.9 -12.4 6.3 56.7 16 18 C R S > S- 0 0 144 1,-0.1 4,-0.9 -13,-0.1 3,-0.4 -0.845 77.2-122.0-120.2 160.2 -11.1 2.9 55.5 17 19 C S H > S+ 0 0 64 -2,-0.3 4,-2.1 1,-0.2 3,-0.3 0.839 110.1 58.1 -65.0 -37.9 -9.1 0.1 57.1 18 20 C D H > S+ 0 0 79 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.741 99.4 57.5 -66.7 -24.1 -6.3 0.4 54.5 19 21 C E H > S+ 0 0 53 -3,-0.4 4,-2.4 2,-0.2 -1,-0.2 0.900 109.2 47.0 -72.1 -34.8 -5.7 4.0 55.3 20 22 C L H X S+ 0 0 32 -4,-0.9 4,-2.4 -3,-0.3 -2,-0.2 0.903 110.5 50.8 -69.6 -46.4 -5.0 2.9 58.9 21 23 C T H X S+ 0 0 79 -4,-2.1 4,-0.8 2,-0.2 -2,-0.2 0.908 112.9 46.5 -59.5 -43.7 -2.8 0.1 58.0 22 24 C R H >< S+ 0 0 107 -4,-1.9 3,-1.1 1,-0.2 4,-0.3 0.952 112.0 50.6 -62.3 -50.2 -0.8 2.4 55.8 23 25 C H H >X S+ 0 0 19 -4,-2.4 3,-2.0 1,-0.2 4,-0.5 0.836 96.2 70.8 -54.9 -38.1 -0.7 5.0 58.6 24 26 C I H >X S+ 0 0 47 -4,-2.4 4,-2.3 1,-0.3 3,-2.0 0.808 82.3 75.0 -46.1 -41.0 0.5 2.4 61.1 25 27 C R H - 0 0 0 5,-3.8 4,-2.1 -2,-0.4 14,-0.0 -0.703 16.4-146.9 -81.7 127.0 15.2 1.1 46.1 36 38 C R T 4 S+ 0 0 233 -2,-0.5 -1,-0.2 1,-0.2 -2,-0.0 0.734 94.0 43.9 -62.1 -26.5 17.0 -1.3 43.8 37 39 C I T 4 S+ 0 0 95 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.863 129.8 15.9 -89.0 -45.1 19.7 1.3 43.2 38 40 C C T 4 S- 0 0 57 2,-0.1 -2,-0.2 0, 0.0 3,-0.1 0.411 91.9-127.6-112.7 -1.2 20.6 2.8 46.5 39 41 C M < + 0 0 99 -4,-2.1 -3,-0.1 1,-0.2 0, 0.0 0.353 55.5 152.3 69.9 -4.3 19.0 0.2 48.8 40 42 C R - 0 0 134 -6,-0.2 -5,-3.8 1,-0.1 2,-0.3 -0.287 39.7-128.5 -59.8 146.5 17.2 2.9 50.6 41 43 C N E -B 34 0B 75 -7,-0.3 2,-0.4 -3,-0.1 -7,-0.2 -0.703 21.8-166.7 -99.8 146.1 13.9 1.9 52.1 42 44 C F E -B 33 0B 26 -9,-2.4 -9,-2.6 -11,-0.4 6,-0.1 -0.991 27.3-140.9-139.8 144.6 10.5 3.5 51.8 43 45 C S S S+ 0 0 44 -2,-0.4 2,-0.3 -12,-0.2 -1,-0.1 0.781 86.4 44.6 -68.4 -31.1 7.2 3.3 53.5 44 46 C R > - 0 0 64 -11,-0.1 4,-0.9 1,-0.1 -11,-0.1 -0.881 64.7-139.2-127.1 159.0 5.2 3.5 50.2 45 47 C S H > S+ 0 0 67 -2,-0.3 4,-1.8 2,-0.2 5,-0.1 0.817 106.9 48.6 -73.7 -42.9 5.2 2.2 46.6 46 48 C D H > S+ 0 0 69 1,-0.2 4,-1.3 2,-0.2 5,-0.2 0.896 110.1 52.3 -69.3 -37.1 4.3 5.4 45.0 47 49 C H H > S+ 0 0 82 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.825 107.1 53.3 -66.4 -31.8 7.0 7.2 46.9 48 50 C L H X S+ 0 0 27 -4,-0.9 4,-2.2 2,-0.2 -1,-0.2 0.926 106.3 52.6 -67.4 -47.7 9.6 4.6 45.8 49 51 C T H X S+ 0 0 78 -4,-1.8 4,-0.5 1,-0.2 -2,-0.2 0.815 112.2 44.8 -58.7 -34.1 8.7 5.1 42.1 50 52 C T H >< S+ 0 0 38 -4,-1.3 3,-0.7 2,-0.2 4,-0.4 0.891 110.9 53.2 -79.6 -42.2 9.1 8.8 42.3 51 53 C H H >X S+ 0 0 34 -4,-2.0 3,-1.9 1,-0.2 4,-0.5 0.874 99.9 61.5 -62.5 -36.0 12.4 8.6 44.2 52 54 C I H >X S+ 0 0 47 -4,-2.2 4,-1.9 1,-0.3 3,-1.7 0.837 91.4 69.7 -58.8 -31.0 14.0 6.2 41.6 53 55 C R H - 0 0 4 5,-2.8 4,-1.7 -2,-0.3 14,-0.0 -0.508 19.1-142.2 -71.6 139.0 5.2 22.5 31.4 64 66 C D T 4 S+ 0 0 158 -2,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.754 97.8 44.9 -70.1 -30.5 2.7 23.4 28.7 65 67 C I T 4 S+ 0 0 115 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.851 134.3 9.3 -84.8 -44.4 3.9 27.0 28.5 66 68 C C T 4 S- 0 0 67 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.497 88.8-124.6-120.8 -0.7 7.6 26.6 28.5 67 69 C G < + 0 0 43 -4,-1.7 2,-0.1 1,-0.2 -3,-0.1 0.608 50.3 159.9 72.0 8.5 8.2 22.8 28.1 68 70 C R - 0 0 135 -6,-0.1 -5,-2.8 1,-0.1 2,-0.3 -0.483 34.6-129.4 -67.9 138.2 10.3 22.7 31.3 69 71 C K E -C 62 0C 123 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.663 25.7-177.5 -97.2 146.9 10.5 19.1 32.6 70 72 C F E -C 61 0C 13 -9,-1.8 -9,-2.0 -2,-0.3 3,-0.0 -0.969 32.2-135.0-138.6 152.4 9.8 17.7 36.1 71 73 C A S S+ 0 0 16 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.798 92.6 37.4 -77.6 -25.2 10.0 14.3 37.8 72 74 C R S >> S- 0 0 105 -11,-0.1 4,-1.6 1,-0.1 3,-0.6 -0.951 72.9-131.0-130.1 148.7 6.6 14.8 39.5 73 75 C S H 3> S+ 0 0 57 -2,-0.3 4,-3.1 1,-0.2 5,-0.2 0.838 108.9 58.3 -64.0 -32.7 3.4 16.4 38.6 74 76 C D H 3> S+ 0 0 81 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.791 105.0 51.9 -68.0 -24.9 3.2 18.3 41.8 75 77 C E H <> S+ 0 0 57 -3,-0.6 4,-1.6 2,-0.2 -1,-0.2 0.857 109.8 48.9 -76.2 -37.4 6.5 19.9 40.8 76 78 C R H X S+ 0 0 73 -4,-1.6 4,-2.5 2,-0.2 -2,-0.2 0.940 111.2 50.0 -65.7 -46.7 4.9 20.7 37.5 77 79 C K H X S+ 0 0 145 -4,-3.1 4,-1.0 1,-0.2 -2,-0.2 0.918 107.3 52.6 -56.9 -49.1 1.9 22.2 39.1 78 80 C R H < S+ 0 0 184 -4,-2.0 4,-0.2 1,-0.2 -1,-0.2 0.877 115.3 44.6 -55.0 -39.8 4.0 24.4 41.5 79 81 C H H >< S+ 0 0 30 -4,-1.6 3,-2.0 1,-0.2 4,-0.3 0.859 98.2 64.1 -74.9 -44.8 5.9 25.7 38.4 80 82 C T H >< S+ 0 0 49 -4,-2.5 3,-1.8 1,-0.3 -1,-0.2 0.831 94.6 68.0 -50.4 -34.7 3.1 26.5 35.8 81 83 C K G >X S+ 0 0 115 -4,-1.0 3,-2.0 1,-0.3 4,-0.6 0.771 83.5 70.1 -53.9 -37.6 1.9 29.1 38.3 82 84 C I G <4 S+ 0 0 72 -3,-2.0 -1,-0.3 1,-0.3 3,-0.2 0.662 84.3 71.7 -62.1 -14.0 5.0 31.2 37.8 83 85 C H G <4 S+ 0 0 74 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.483 88.9 58.2 -83.8 3.6 3.7 32.0 34.3 84 86 C L T <4 0 0 160 -3,-2.0 -1,-0.2 -4,-0.0 -2,-0.2 0.777 360.0 360.0 -90.5 -32.8 1.1 34.1 35.8 85 87 C R < 0 0 242 -4,-0.6 -3,-0.2 -3,-0.2 -4,-0.0 -0.226 360.0 360.0 176.6 360.0 4.1 36.0 37.4