==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 08-APR-05 1ZBN . COMPND 2 MOLECULE: BIV MRNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.CALABRO,M.D.DAUGHERTY,A.D.FRANKEL . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2029.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 B G 0 0 81 0, 0.0 2,-1.9 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0-123.7 8.7 22.4 -14.4 2 2 B R + 0 0 251 2,-0.1 2,-0.3 3,-0.0 3,-0.0 -0.333 360.0 70.9 -58.3 84.2 12.2 21.3 -13.4 3 3 B R S S- 0 0 193 -2,-1.9 0, 0.0 2,-0.1 0, 0.0 -0.978 106.5 -52.4-177.0-178.5 11.0 18.3 -11.4 4 4 B K + 0 0 93 -2,-0.3 -2,-0.1 2,-0.0 -1,-0.1 0.839 69.2 176.1 -39.1 -42.3 9.5 14.7 -11.5 5 5 B K + 0 0 123 1,-0.1 -2,-0.1 -3,-0.0 -3,-0.0 0.833 34.3 102.0 28.7 100.8 6.7 16.3 -13.6 6 6 B R + 0 0 153 4,-0.0 2,-1.8 0, 0.0 4,-0.1 0.155 36.9 174.8-163.6 -58.0 4.4 13.5 -14.6 7 7 B G + 0 0 45 2,-0.1 8,-1.0 6,-0.1 9,-0.5 -0.509 68.5 27.0 74.9 -84.5 1.3 13.3 -12.5 8 8 B T S S- 0 0 70 -2,-1.8 7,-0.1 6,-0.3 0, 0.0 -0.784 74.2-127.1-112.4 156.3 -0.6 10.6 -14.2 9 9 B R S S- 0 0 160 5,-0.3 -2,-0.1 -2,-0.3 6,-0.0 0.273 73.1 -75.3 -86.8 16.5 0.8 7.7 -16.2 10 10 B G S S+ 0 0 59 -4,-0.1 -1,-0.0 0, 0.0 -3,-0.0 0.484 126.2 50.9 108.7 4.5 -1.5 8.5 -19.2 11 11 B K S S- 0 0 166 3,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.058 126.4 -75.9-163.6 43.3 -4.9 7.3 -18.1 12 12 B G S S+ 0 0 50 1,-0.1 3,-0.0 0, 0.0 -5,-0.0 0.692 94.1 130.4 65.1 18.2 -5.5 8.8 -14.7 13 13 B R - 0 0 140 1,-0.1 -1,-0.1 2,-0.0 -5,-0.1 0.672 55.6-152.7 -75.4 -16.1 -3.1 6.2 -13.3 14 14 B K - 0 0 114 -8,-0.1 -6,-0.3 1,-0.1 -5,-0.3 0.129 14.6-133.2 64.1 171.9 -1.4 9.0 -11.4 15 15 B I - 0 0 11 -8,-1.0 -7,-0.1 -7,-0.1 -1,-0.1 0.620 21.6-178.4-129.2 -45.9 2.3 9.1 -10.4 16 16 B H 0 0 134 -9,-0.5 -8,-0.0 1,-0.1 0, 0.0 0.877 360.0 360.0 35.0 90.6 2.6 10.2 -6.8 17 17 B Y 0 0 186 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.705 360.0 360.0 -71.5 360.0 6.4 10.2 -6.3