==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-JUN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PEPTIDE 18-DEC-96 1ZEC . COMPND 2 MOLECULE: NEF1-25; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR K.J.BARNHAM,S.A.MONKS,M.G.HINDS,A.A.AZAD,R.S.NORTON . 25 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2747.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 72.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 44.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1BA G 0 0 125 0, 0.0 4,-0.3 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 41.8 3.0 -5.7 -2.1 2 2 A G - 0 0 50 1,-0.1 2,-1.9 2,-0.1 4,-0.5 0.498 360.0-104.3 87.1 129.8 -0.8 -6.6 -2.3 3 3 A K S S+ 0 0 175 1,-0.2 -1,-0.1 2,-0.1 4,-0.0 -0.205 107.5 70.2 -79.3 49.1 -3.5 -5.7 0.2 4 4 A W S > S+ 0 0 231 -2,-1.9 3,-0.6 -3,-0.2 4,-0.2 0.527 99.4 31.9-125.1 -77.2 -3.4 -9.3 1.5 5 5 A S T >> S+ 0 0 67 -4,-0.3 4,-2.7 1,-0.2 3,-1.1 0.480 88.6 118.5 -66.8 1.1 -0.2 -10.1 3.4 6 6 A K H 3> S+ 0 0 118 -4,-0.5 4,-1.7 1,-0.3 -1,-0.2 0.845 70.8 48.3 -31.6 -65.3 -0.3 -6.4 4.5 7 7 A S H <> S+ 0 0 90 -3,-0.6 4,-1.3 1,-0.2 -1,-0.3 0.875 113.7 47.4 -50.4 -41.0 -0.7 -7.2 8.2 8 8 A S H X> S+ 0 0 75 -3,-1.1 4,-3.1 1,-0.2 3,-0.5 0.936 107.9 55.0 -67.4 -43.0 2.2 -9.7 8.0 9 9 A V H 3< S+ 0 0 91 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.792 111.6 46.4 -58.9 -29.6 4.3 -7.2 6.1 10 10 A I H 3< S+ 0 0 110 -4,-1.7 4,-0.3 -5,-0.3 -1,-0.3 0.674 115.3 43.2 -89.0 -20.8 3.6 -4.8 9.0 11 11 A G H XX S+ 0 0 32 -4,-1.3 4,-2.2 -3,-0.5 3,-0.8 0.828 102.4 66.2 -92.6 -34.5 4.4 -7.3 11.8 12 12 A W H 3X S+ 0 0 155 -4,-3.1 4,-3.4 1,-0.3 5,-0.5 0.941 95.1 57.9 -51.2 -56.4 7.5 -8.8 10.3 13 13 A P H 3> S+ 0 0 54 0, 0.0 4,-2.2 0, 0.0 -1,-0.3 0.871 110.6 45.5 -40.5 -40.5 9.4 -5.5 10.6 14 14 A A H <4 S+ 0 0 62 -3,-0.8 -2,-0.3 -4,-0.3 4,-0.3 0.885 112.6 50.0 -75.2 -36.4 8.6 -5.9 14.3 15 15 A V H >X S+ 0 0 70 -4,-2.2 4,-3.4 -3,-0.2 3,-1.5 0.965 115.6 41.9 -64.7 -52.2 9.7 -9.5 14.3 16 16 A R H 3X S+ 0 0 108 -4,-3.4 4,-3.2 1,-0.3 5,-0.3 0.955 113.2 53.3 -59.6 -47.8 13.0 -8.7 12.5 17 17 A E H 3< S+ 0 0 122 -4,-2.2 4,-0.3 -5,-0.5 -1,-0.3 0.581 114.2 43.6 -65.4 -5.0 13.4 -5.7 14.7 18 18 A R H <> S+ 0 0 171 -3,-1.5 4,-1.6 -4,-0.3 -2,-0.2 0.805 115.5 45.1-100.6 -56.1 12.9 -8.1 17.7 19 19 A M H X S+ 0 0 83 -4,-3.4 4,-2.8 1,-0.2 -2,-0.2 0.861 104.1 63.9 -54.7 -39.5 15.1 -10.9 16.5 20 20 A R H < S+ 0 0 139 -4,-3.2 3,-0.3 -5,-0.3 -1,-0.2 0.973 104.5 48.5 -48.2 -62.4 17.9 -8.5 15.5 21 21 A R H 4 S+ 0 0 208 -4,-0.3 -2,-0.2 -5,-0.3 -1,-0.2 0.915 110.8 48.7 -40.5 -64.2 18.1 -7.6 19.2 22 22 A A H < S+ 0 0 64 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.863 137.8 4.5 -46.8 -46.2 18.3 -11.2 20.4 23 23 A E < + 0 0 132 -4,-2.8 2,-0.9 -3,-0.3 -1,-0.2 -0.506 67.5 176.6-146.4 74.8 20.9 -12.2 17.9 24 24 A P 0 0 79 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.127 360.0 360.0 -74.6 25.4 22.2 -9.2 15.8 25 25 A A 0 0 136 -2,-0.9 -5,-0.1 -5,-0.1 0, 0.0 0.711 360.0 360.0 -79.2 360.0 24.8 -11.3 13.9