==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 14-DEC-07 2ZEQ . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE PARKIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.TOMOO . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5128.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 21.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 226 0, 0.0 19,-0.1 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0 132.0 -6.9 53.4 6.6 2 2 A G - 0 0 35 2,-0.0 18,-0.2 16,-0.0 2,-0.2 0.497 360.0-129.4 94.4 113.7 -4.0 53.0 4.3 3 3 A M E -A 19 0A 38 16,-2.2 16,-2.9 62,-0.0 2,-0.4 -0.575 8.5-135.4 -94.0 159.7 -3.0 56.5 3.0 4 4 A I E -A 18 0A 38 14,-0.2 62,-3.0 -2,-0.2 63,-0.4 -0.955 20.2-179.7-114.0 133.7 -2.5 57.5 -0.6 5 5 A V E -A 17 0A 1 12,-2.1 12,-2.3 -2,-0.4 2,-0.4 -0.984 25.2-130.3-126.8 137.9 0.5 59.6 -1.6 6 6 A F E -Ab 16 68A 61 61,-3.1 63,-3.1 -2,-0.4 2,-0.6 -0.764 16.4-150.7 -94.4 142.3 0.9 60.6 -5.3 7 7 A V E -Ab 15 69A 1 8,-3.3 8,-2.4 -2,-0.4 2,-0.6 -0.927 8.1-167.6-118.4 117.3 4.2 60.1 -7.0 8 8 A R E + b 0 70A 84 61,-3.1 63,-3.0 -2,-0.6 2,-0.4 -0.896 13.9 166.2-104.7 119.2 5.4 62.2 -9.9 9 9 A F S S- 0 0 13 -2,-0.6 63,-0.1 4,-0.4 3,-0.1 -0.941 75.1 -26.9-134.2 112.7 8.4 61.0 -11.9 10 10 A N S S+ 0 0 107 61,-0.5 2,-0.3 -2,-0.4 -1,-0.1 0.898 117.8 99.2 50.2 44.2 9.2 62.6 -15.2 11 11 A S S S- 0 0 43 1,-0.1 -1,-0.2 0, 0.0 3,-0.0 -0.964 81.2-123.7-151.2 166.2 5.6 63.5 -15.6 12 12 A S S S+ 0 0 117 -2,-0.3 2,-0.3 -3,-0.1 -4,-0.1 0.600 98.7 41.8 -86.7 -14.9 3.1 66.4 -15.2 13 13 A Y S S- 0 0 157 -4,-0.1 -4,-0.4 -6,-0.1 2,-0.3 -0.970 78.1-124.2-136.7 155.0 1.0 64.3 -12.9 14 14 A G - 0 0 12 -2,-0.3 -6,-0.3 -6,-0.2 56,-0.1 -0.732 16.7-133.6-101.3 140.1 1.5 61.8 -10.1 15 15 A F E -A 7 0A 36 -8,-2.4 -8,-3.3 -2,-0.3 2,-0.3 -0.621 32.7-103.8 -87.1 149.6 0.3 58.2 -9.8 16 16 A P E -A 6 0A 87 0, 0.0 2,-0.4 0, 0.0 -10,-0.2 -0.582 34.4-172.6 -79.7 131.7 -1.4 57.0 -6.5 17 17 A V E -A 5 0A 18 -12,-2.3 -12,-2.1 -2,-0.3 2,-0.5 -0.987 20.5-135.0-125.1 125.6 0.6 54.8 -4.2 18 18 A E E +A 4 0A 113 -2,-0.4 2,-0.2 -14,-0.2 -14,-0.2 -0.692 42.4 152.6 -80.3 124.1 -1.0 53.1 -1.1 19 19 A V E -A 3 0A 10 -16,-2.9 -16,-2.2 -2,-0.5 2,-0.3 -0.767 26.4-150.9-138.7 175.8 1.4 53.6 1.9 20 20 A D > - 0 0 80 -2,-0.2 3,-2.1 -18,-0.2 38,-0.4 -0.899 43.1 -78.2-142.7-177.7 1.0 53.8 5.6 21 21 A S T 3 S+ 0 0 52 -2,-0.3 38,-2.2 1,-0.3 39,-0.3 0.766 126.3 52.8 -52.4 -28.0 2.7 55.5 8.6 22 22 A D T 3 S+ 0 0 110 36,-0.2 2,-0.3 35,-0.2 -1,-0.3 0.414 80.3 111.4 -90.5 0.4 5.5 52.8 8.5 23 23 A T < - 0 0 23 -3,-2.1 35,-2.0 1,-0.1 2,-0.2 -0.598 58.3-145.1 -79.0 133.5 6.4 53.2 4.9 24 24 A S B > -E 57 0B 23 -2,-0.3 4,-1.9 33,-0.2 33,-0.2 -0.499 21.8-115.2 -93.9 167.6 9.9 54.7 4.4 25 25 A I H > S+ 0 0 2 31,-2.0 4,-2.8 29,-0.7 5,-0.2 0.900 117.1 57.3 -68.9 -39.0 11.2 57.0 1.7 26 26 A L H > S+ 0 0 53 28,-2.2 4,-1.8 30,-0.3 -1,-0.2 0.951 107.2 48.1 -57.2 -46.6 13.6 54.2 0.5 27 27 A Q H > S+ 0 0 97 27,-0.3 4,-1.0 2,-0.2 -1,-0.2 0.883 110.3 50.6 -60.4 -40.2 10.6 51.9 -0.0 28 28 A L H >X S+ 0 0 6 -4,-1.9 4,-1.1 1,-0.2 3,-0.9 0.933 109.1 52.1 -63.9 -44.8 8.6 54.6 -1.9 29 29 A K H 3X S+ 0 0 8 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.867 102.5 60.6 -57.7 -35.6 11.7 55.1 -4.1 30 30 A E H 3X S+ 0 0 96 -4,-1.8 4,-1.9 1,-0.2 -1,-0.2 0.828 95.9 59.8 -65.2 -29.1 11.8 51.4 -4.8 31 31 A V H S+ 0 0 15 -4,-2.4 4,-1.1 1,-0.2 5,-0.9 0.903 111.4 44.0 -62.8 -34.9 13.0 52.0 -9.3 34 34 A K H <5S+ 0 0 151 -4,-1.9 -1,-0.2 2,-0.2 -2,-0.2 0.762 114.6 48.5 -78.3 -29.3 11.0 49.0 -10.4 35 35 A R H <5S+ 0 0 124 -4,-1.1 -2,-0.2 -5,-0.2 -1,-0.2 0.847 124.3 30.7 -78.2 -36.3 8.6 51.0 -12.6 36 36 A Q H <5S- 0 0 75 -4,-2.7 -2,-0.2 2,-0.2 -3,-0.2 0.468 100.8-124.6-103.5 -3.8 11.5 52.8 -14.4 37 37 A G T <5 + 0 0 71 -4,-1.1 -3,-0.2 1,-0.2 -4,-0.1 0.780 69.3 129.2 64.4 26.9 14.2 50.1 -14.2 38 38 A V < - 0 0 27 -5,-0.9 -1,-0.2 -6,-0.4 -2,-0.2 -0.902 66.5 -99.7-113.8 141.5 16.5 52.6 -12.5 39 39 A P > - 0 0 63 0, 0.0 3,-2.0 0, 0.0 -9,-0.0 -0.319 22.6-130.0 -62.1 140.2 18.4 51.9 -9.2 40 40 A A G > S+ 0 0 18 1,-0.3 3,-1.7 2,-0.2 -10,-0.0 0.799 106.1 65.4 -60.0 -27.2 16.8 53.3 -6.1 41 41 A D G 3 S+ 0 0 111 1,-0.3 -1,-0.3 32,-0.0 -15,-0.0 0.622 98.4 54.5 -72.3 -9.2 20.2 54.8 -5.1 42 42 A Q G < S+ 0 0 64 -3,-2.0 32,-2.1 31,-0.1 2,-0.3 0.108 99.2 84.9-106.3 20.6 20.0 57.1 -8.1 43 43 A L E < -C 73 0A 0 -3,-1.7 2,-0.3 30,-0.2 30,-0.2 -0.933 54.4-171.5-124.0 150.7 16.6 58.4 -7.0 44 44 A R E -C 72 0A 78 28,-2.3 28,-1.9 -2,-0.3 2,-0.5 -0.965 16.7-136.8-136.1 149.8 15.6 61.2 -4.6 45 45 A V E -CD 71 52A 0 7,-0.6 7,-2.6 -2,-0.3 2,-0.5 -0.944 17.0-169.3-111.7 124.3 12.1 62.2 -3.1 46 46 A I E +CD 70 51A 49 24,-2.8 24,-2.7 -2,-0.5 2,-0.4 -0.942 11.0 170.9-116.0 126.6 11.2 66.0 -2.9 47 47 A F E > - D 0 50A 22 3,-3.1 3,-1.3 -2,-0.5 22,-0.1 -0.965 62.9 -20.3-139.9 123.6 8.2 67.0 -0.9 48 48 A A T 3 S- 0 0 75 20,-0.4 -1,-0.1 -2,-0.4 3,-0.1 0.924 128.8 -46.1 48.6 48.9 7.0 70.5 0.0 49 49 A G T 3 S+ 0 0 79 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.664 119.9 106.0 69.3 18.2 10.4 72.0 -0.5 50 50 A K E < -D 47 0A 85 -3,-1.3 -3,-3.1 2,-0.0 2,-0.8 -0.998 63.1-142.5-131.5 126.5 12.3 69.2 1.4 51 51 A E E -D 46 0A 111 -2,-0.4 -5,-0.2 -5,-0.2 -3,-0.0 -0.828 32.0-141.6 -88.1 114.5 14.4 66.5 -0.1 52 52 A L E -D 45 0A 14 -7,-2.6 -7,-0.6 -2,-0.8 9,-0.0 -0.658 7.5-125.6 -86.3 124.3 13.6 63.5 2.2 53 53 A P > - 0 0 78 0, 0.0 3,-1.9 0, 0.0 -28,-0.4 -0.319 25.8-107.8 -68.8 146.6 16.2 61.0 3.3 54 54 A N T 3 S+ 0 0 56 1,-0.3 -28,-2.2 -29,-0.2 -29,-0.7 0.762 112.0 53.5 -36.4 -48.3 15.8 57.2 2.8 55 55 A H T 3 S+ 0 0 169 -30,-0.2 -1,-0.3 -31,-0.1 2,-0.1 0.615 81.5 102.6 -76.3 -11.9 15.2 56.4 6.5 56 56 A L < - 0 0 58 -3,-1.9 -31,-2.0 -32,-0.1 -30,-0.3 -0.442 58.2-152.5 -72.2 145.5 12.4 58.7 7.3 57 57 A T B > -E 24 0B 23 -33,-0.2 3,-1.0 -2,-0.1 -33,-0.2 -0.675 29.9-101.3-109.6 170.0 8.9 57.2 7.4 58 58 A V G > S+ 0 0 7 -35,-2.0 3,-1.1 -38,-0.4 5,-0.3 0.880 123.4 48.8 -57.6 -40.0 5.5 58.7 6.7 59 59 A Q G 3 S+ 0 0 124 -38,-2.2 -1,-0.3 1,-0.2 -37,-0.1 0.636 108.9 56.9 -78.7 -10.2 4.7 59.2 10.4 60 60 A N G < S+ 0 0 110 -3,-1.0 2,-0.3 -39,-0.3 -1,-0.2 0.109 111.3 34.5-105.0 17.2 8.1 60.7 10.9 61 61 A C S < S- 0 0 26 -3,-1.1 -9,-0.0 2,-0.2 0, 0.0 -0.911 98.8 -83.1-154.7 177.3 7.8 63.6 8.4 62 62 A D S S+ 0 0 108 -2,-0.3 2,-0.2 -15,-0.1 -4,-0.1 0.305 78.4 125.2 -76.4 13.6 5.1 65.9 7.0 63 63 A L + 0 0 9 -5,-0.3 2,-0.2 -6,-0.2 -2,-0.2 -0.513 36.3 167.5 -69.6 137.7 3.7 63.5 4.4 64 64 A E > - 0 0 130 -2,-0.2 3,-2.2 1,-0.1 -2,-0.0 -0.815 44.7 -42.6-140.6-179.3 0.0 63.1 5.0 65 65 A Q T 3 S+ 0 0 86 1,-0.3 -60,-0.2 -2,-0.2 -1,-0.1 -0.237 126.7 1.0 -52.1 128.5 -3.0 61.7 3.2 66 66 A Q T 3 S+ 0 0 116 -62,-3.0 -1,-0.3 1,-0.2 -61,-0.2 0.605 86.5 156.7 63.8 21.0 -2.9 62.7 -0.5 67 67 A S < - 0 0 13 -3,-2.2 -61,-3.1 -63,-0.4 2,-0.5 -0.333 36.3-135.4 -63.4 154.3 0.4 64.5 -0.4 68 68 A I E -b 6 0A 89 -63,-0.2 -20,-0.4 -61,-0.0 2,-0.3 -0.973 20.3-167.1-116.3 129.7 2.2 64.7 -3.8 69 69 A V E -b 7 0A 0 -63,-3.1 -61,-3.1 -2,-0.5 2,-0.6 -0.858 15.1-138.7-115.1 153.8 5.9 64.0 -4.0 70 70 A H E -bC 8 46A 59 -24,-2.7 -24,-2.8 -2,-0.3 2,-0.6 -0.933 14.9-159.8-110.3 115.5 8.3 64.6 -6.9 71 71 A I E - C 0 45A 1 -63,-3.0 -61,-0.5 -2,-0.6 2,-0.3 -0.901 15.4-177.9-101.2 126.9 10.8 61.8 -7.5 72 72 A V E - C 0 44A 14 -28,-1.9 -28,-2.3 -2,-0.6 2,-0.4 -0.828 23.1-119.1-119.6 160.4 13.9 62.8 -9.4 73 73 A Q E - C 0 43A 36 -2,-0.3 -30,-0.2 -30,-0.2 3,-0.1 -0.824 23.7-140.5-104.1 140.8 17.0 61.0 -10.7 74 74 A R S S+ 0 0 84 -32,-2.1 2,-0.1 -2,-0.4 3,-0.0 -0.968 86.6 34.1-142.8 123.9 20.6 61.9 -9.7 75 75 A P S S+ 0 0 100 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 0.570 85.9 152.1 -77.5 155.9 22.8 61.8 -11.6 76 76 A R - 0 0 132 -2,-0.1 2,-0.1 -3,-0.1 -4,-0.0 -0.949 50.7-109.8-153.6 128.9 20.8 63.0 -14.6 77 77 A R 0 0 228 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.405 360.0 360.0 -58.9 127.2 22.0 64.9 -17.7 78 78 A R 0 0 254 -2,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.693 360.0 360.0 -80.1 360.0 20.4 68.4 -17.3