==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 05-MAY-05 1ZL8 . COMPND 2 MOLECULE: LIN-7; . SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; . AUTHOR K.Y.PETROSKY,H.D.OU,F.LOHR,V.DOTSCH,W.A.LIM . 107 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7177.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 79.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 23 21.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 56 52.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 3.7 -6.3 18.3 -5.9 2 2 A S - 0 0 46 1,-0.1 5,-0.0 2,-0.0 0, 0.0 -0.722 360.0 -58.1-128.2 177.8 -6.7 14.5 -5.4 3 3 A L > - 0 0 63 -2,-0.2 4,-1.3 1,-0.1 3,-0.2 -0.313 37.9-142.6 -59.2 137.3 -8.8 11.7 -6.6 4 4 A N H > S+ 0 0 128 1,-0.2 4,-4.0 2,-0.2 5,-0.3 0.808 99.1 67.2 -71.0 -30.7 -12.5 12.3 -5.9 5 5 A L H > S+ 0 0 14 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.909 101.5 47.3 -54.8 -45.4 -12.8 8.6 -5.2 6 6 A E H 4 S+ 0 0 54 2,-0.2 4,-0.4 1,-0.2 -1,-0.2 0.907 115.4 44.7 -62.6 -44.1 -10.7 9.0 -2.1 7 7 A R H >X S+ 0 0 150 -4,-1.3 4,-1.4 1,-0.2 3,-1.1 0.873 113.5 49.8 -67.5 -38.7 -12.7 12.0 -1.1 8 8 A D H 3X S+ 0 0 48 -4,-4.0 4,-2.8 1,-0.3 -1,-0.2 0.706 92.1 79.5 -71.8 -20.6 -15.9 10.2 -1.8 9 9 A V H 3< S+ 0 0 19 -4,-1.3 4,-0.3 -5,-0.3 -1,-0.3 0.804 105.0 33.1 -55.6 -30.1 -14.5 7.4 0.2 10 10 A Q H X4 S+ 0 0 163 -3,-1.1 3,-0.7 -4,-0.4 4,-0.4 0.820 117.3 52.5 -93.2 -40.1 -15.6 9.4 3.2 11 11 A R H >X S+ 0 0 134 -4,-1.4 4,-1.4 1,-0.2 3,-0.7 0.693 100.3 66.6 -68.7 -19.1 -18.7 11.0 1.7 12 12 A I H 3X S+ 0 0 0 -4,-2.8 4,-3.0 1,-0.2 -1,-0.2 0.847 89.6 62.5 -69.4 -35.3 -19.8 7.5 0.8 13 13 A L H <> S+ 0 0 30 -3,-0.7 4,-1.2 -4,-0.3 -1,-0.2 0.712 103.4 53.0 -62.0 -19.8 -20.2 6.8 4.4 14 14 A E H <> S+ 0 0 83 -3,-0.7 4,-0.9 -4,-0.4 -1,-0.2 0.919 109.4 43.6 -80.2 -49.1 -22.8 9.5 4.3 15 15 A L H >X S+ 0 0 27 -4,-1.4 4,-3.0 1,-0.2 3,-0.5 0.905 113.5 53.4 -62.1 -43.3 -24.8 8.1 1.5 16 16 A M H 3X S+ 0 0 4 -4,-3.0 4,-2.4 1,-0.3 -1,-0.2 0.912 109.3 47.0 -57.4 -46.5 -24.6 4.7 2.9 17 17 A E H 3< S+ 0 0 85 -4,-1.2 -1,-0.3 -5,-0.2 -2,-0.2 0.665 113.6 51.9 -69.5 -16.8 -26.0 5.9 6.3 18 18 A H H X< S+ 0 0 115 -4,-0.9 3,-1.0 -3,-0.5 -2,-0.2 0.876 112.1 41.7 -84.8 -43.9 -28.6 7.7 4.3 19 19 A V H >< S+ 0 0 5 -4,-3.0 3,-1.3 1,-0.3 -2,-0.2 0.806 106.1 64.7 -72.1 -30.5 -29.7 4.7 2.3 20 20 A Q G >< S+ 0 0 36 -4,-2.4 3,-1.0 1,-0.3 -1,-0.3 0.482 80.4 84.1 -70.5 -1.7 -29.5 2.6 5.4 21 21 A K G < S+ 0 0 156 -3,-1.0 -1,-0.3 1,-0.2 -2,-0.1 0.313 74.3 74.2 -82.4 8.4 -32.3 4.8 6.6 22 22 A T G < S- 0 0 61 -3,-1.3 2,-0.7 1,-0.1 -1,-0.2 0.682 91.2-143.2 -91.6 -23.0 -34.6 2.4 4.8 23 23 A G S < S+ 0 0 58 -3,-1.0 2,-2.5 -4,-0.1 3,-0.3 -0.244 80.9 93.7 88.8 -45.5 -34.2 -0.3 7.4 24 24 A E S S+ 0 0 129 -2,-0.7 47,-0.2 1,-0.2 46,-0.1 -0.402 72.1 70.6 -78.9 63.1 -34.3 -3.0 4.7 25 25 A V S >S- 0 0 2 -2,-2.5 5,-0.5 -5,-0.2 -1,-0.2 -0.024 93.7-125.3-170.1 43.9 -30.6 -3.1 4.4 26 26 A N T >>5 - 0 0 82 -3,-0.3 4,-1.5 1,-0.2 3,-1.2 0.480 13.2-140.4 -0.2 108.8 -29.2 -4.7 7.6 27 27 A N H 3>5S+ 0 0 100 1,-0.3 4,-4.6 2,-0.2 5,-0.4 0.649 94.2 83.3 -60.5 -13.8 -26.8 -2.0 8.7 28 28 A A H 3>5S+ 0 0 59 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.943 100.8 30.6 -54.3 -52.5 -24.7 -5.0 9.6 29 29 A K H <>5S+ 0 0 28 -3,-1.2 4,-1.9 2,-0.2 35,-0.3 0.911 120.1 54.1 -72.8 -44.7 -23.4 -5.2 6.1 30 30 A L H XX S+ 0 0 31 -4,-4.6 4,-1.7 1,-0.2 3,-1.1 0.894 107.3 60.9 -65.2 -41.3 -21.6 -0.9 8.6 32 32 A S H 3X S+ 0 0 40 -4,-1.9 4,-1.0 -5,-0.4 -1,-0.2 0.831 100.5 55.7 -54.1 -34.1 -19.2 -3.7 7.5 33 33 A L H 3X S+ 0 0 0 -4,-1.9 4,-2.9 -3,-0.3 -1,-0.3 0.808 103.7 54.7 -68.3 -30.6 -18.6 -1.6 4.4 34 34 A Q H > S+ 0 0 177 1,-0.2 4,-2.6 2,-0.2 3,-1.0 0.818 96.2 69.6 -76.4 -33.0 -6.6 2.3 7.5 41 41 A F H 3> S+ 0 0 46 1,-0.3 4,-3.7 2,-0.2 5,-0.4 0.802 89.3 66.0 -54.0 -31.1 -5.1 -0.3 5.2 42 42 A F H 3> S+ 0 0 7 -3,-0.3 4,-2.3 -6,-0.2 -1,-0.3 0.907 109.9 34.2 -57.7 -45.6 -6.8 1.6 2.4 43 43 A G H <> S+ 0 0 32 -3,-1.0 4,-1.6 -4,-0.5 -2,-0.2 0.843 118.2 53.2 -78.1 -36.7 -4.6 4.6 3.0 44 44 A A H X S+ 0 0 61 -4,-2.6 4,-0.8 2,-0.2 -2,-0.2 0.912 120.0 33.9 -63.9 -44.1 -1.6 2.6 3.9 45 45 A V H >X S+ 0 0 27 -4,-3.7 4,-2.3 -5,-0.2 3,-0.7 0.885 113.6 59.1 -77.4 -41.8 -1.9 0.6 0.8 46 46 A R H 3X S+ 0 0 58 -4,-2.3 4,-1.9 -5,-0.4 -2,-0.2 0.794 100.0 60.4 -56.6 -29.4 -3.2 3.5 -1.3 47 47 A E H 3X S+ 0 0 109 -4,-1.6 4,-1.8 2,-0.2 -1,-0.3 0.892 105.9 45.0 -65.5 -41.4 0.1 5.2 -0.3 48 48 A V H 0 0 78 0, 0.0 4,-0.8 0, 0.0 43,-0.1 0.000 360.0 360.0 360.0 11.2 -11.2 -11.6 -1.2 56 107 B D H > + 0 0 116 2,-0.2 4,-1.3 3,-0.1 41,-0.0 0.726 360.0 60.6 -91.0 -27.5 -14.5 -12.2 0.6 57 108 B A H 4 S+ 0 0 42 2,-0.2 4,-0.3 1,-0.2 3,-0.2 0.902 107.4 45.0 -65.4 -42.5 -13.8 -9.6 3.2 58 109 B V H >> S+ 0 0 16 1,-0.2 3,-2.1 2,-0.2 4,-0.8 0.882 106.7 59.8 -67.9 -39.7 -13.7 -6.9 0.6 59 110 B Q H 3X S+ 0 0 100 -4,-0.8 4,-3.2 1,-0.3 -1,-0.2 0.823 92.0 68.5 -56.9 -33.1 -16.8 -8.3 -1.1 60 111 B R H 3X S+ 0 0 63 -4,-1.3 4,-0.8 1,-0.2 -1,-0.3 0.762 92.2 63.0 -57.5 -25.6 -18.6 -7.6 2.2 61 112 B A H X4 S+ 0 0 3 -3,-2.1 3,-0.8 -4,-0.3 -1,-0.2 0.985 117.1 24.1 -62.9 -61.3 -18.1 -4.0 1.4 62 113 B K H >X S+ 0 0 83 -4,-0.8 3,-2.8 1,-0.2 4,-1.0 0.692 104.6 87.7 -76.8 -20.1 -20.2 -4.1 -1.8 63 114 B E H >X S+ 0 0 68 -4,-3.2 4,-0.9 1,-0.3 3,-0.8 0.826 79.9 62.7 -46.0 -36.5 -22.0 -7.1 -0.3 64 115 B V H XX S+ 0 0 0 -4,-0.8 4,-1.5 -3,-0.8 3,-0.6 0.833 96.5 57.9 -59.2 -33.2 -24.3 -4.5 1.3 65 116 B L H <> S+ 0 0 33 -3,-2.8 4,-0.8 1,-0.2 -1,-0.3 0.811 94.9 65.4 -66.1 -30.8 -25.3 -3.5 -2.2 66 117 B E H << S+ 0 0 96 -4,-1.0 -1,-0.2 -3,-0.8 -2,-0.2 0.847 107.0 40.9 -59.3 -35.6 -26.4 -7.1 -2.7 67 118 B E H XX S+ 0 0 63 -4,-0.9 3,-1.6 -3,-0.6 4,-1.0 0.773 106.3 62.7 -82.2 -29.6 -29.1 -6.6 -0.1 68 119 B I H 3< S+ 0 0 8 -4,-1.5 5,-0.3 1,-0.3 -2,-0.2 0.623 81.7 84.8 -69.5 -12.7 -29.9 -3.1 -1.4 69 120 B S T 3< S+ 0 0 112 -4,-0.8 -1,-0.3 1,-0.2 -2,-0.2 0.776 99.3 35.8 -59.1 -26.9 -30.9 -4.8 -4.6 70 121 B C T <4 S+ 0 0 92 -3,-1.6 -1,-0.2 -46,-0.1 -2,-0.2 0.800 107.6 75.7 -93.3 -38.0 -34.2 -5.3 -2.9 71 122 B Y S < S- 0 0 19 -4,-1.0 2,-1.3 -47,-0.2 -1,-0.1 -0.689 82.6-134.7 -81.8 117.4 -34.2 -2.0 -1.1 72 123 B P + 0 0 116 0, 0.0 2,-0.2 0, 0.0 -3,-0.1 -0.593 44.1 158.3 -75.0 96.1 -35.0 0.9 -3.5 73 124 B E - 0 0 16 -2,-1.3 2,-0.4 -5,-0.3 -54,-0.0 -0.504 53.0 -56.2-110.6-179.6 -32.4 3.4 -2.5 74 125 B N > - 0 0 76 1,-0.2 4,-3.3 -2,-0.2 5,-0.5 -0.441 42.2-144.3 -61.7 115.5 -30.8 6.4 -4.3 75 126 B N H > S+ 0 0 100 -2,-0.4 4,-0.7 1,-0.3 -1,-0.2 0.770 104.6 51.3 -51.5 -26.2 -29.3 5.0 -7.5 76 127 B D H > S+ 0 0 86 2,-0.2 4,-1.3 3,-0.2 -1,-0.3 0.925 110.9 44.5 -76.7 -48.7 -26.6 7.6 -6.8 77 128 B A H >> S+ 0 0 3 1,-0.2 4,-1.2 2,-0.2 3,-1.1 0.960 116.4 45.6 -59.3 -54.5 -26.0 6.4 -3.2 78 129 B K H 3X S+ 0 0 64 -4,-3.3 4,-1.2 1,-0.3 -1,-0.2 0.801 110.8 56.5 -58.7 -29.5 -26.0 2.8 -4.2 79 130 B E H 3X S+ 0 0 88 -4,-0.7 4,-4.1 -5,-0.5 -1,-0.3 0.764 96.6 63.7 -72.8 -26.5 -23.8 3.8 -7.0 80 131 B L H < S+ 0 0 187 -4,-1.2 3,-2.3 1,-0.2 -2,-0.2 0.936 111.4 48.0 -72.9 -49.6 -20.5 0.5 -6.6 83 134 B I H 3< S+ 0 0 40 -4,-4.1 -1,-0.2 1,-0.3 -2,-0.2 0.700 96.7 75.6 -63.6 -18.9 -18.2 3.2 -7.9 84 135 B L T 3< S+ 0 0 5 -4,-0.9 2,-0.8 -5,-0.3 6,-0.3 0.578 82.9 76.0 -68.5 -8.5 -16.2 2.5 -4.7 85 136 B T < + 0 0 51 -3,-2.3 -1,-0.2 4,-0.1 -4,-0.0 -0.766 67.9 141.1-108.0 84.8 -15.1 -0.6 -6.6 86 137 B Q > - 0 0 62 -2,-0.8 5,-1.0 1,-0.0 4,-0.3 -0.570 68.9 -96.1-115.1 179.4 -12.5 0.6 -9.1 87 138 B P T 5S+ 0 0 91 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 0.450 124.5 48.3 -75.0 -0.2 -9.2 -0.7 -10.5 88 139 B H T >5S+ 0 0 82 3,-0.1 4,-0.7 4,-0.0 -39,-0.1 0.836 125.0 19.9-101.9 -55.8 -7.5 1.5 -7.9 89 140 B F H >>5S+ 0 0 12 2,-0.2 4,-2.4 3,-0.1 3,-1.8 0.978 130.4 40.6 -78.2 -72.3 -9.4 0.7 -4.7 90 141 B M H 3>5S+ 0 0 49 -6,-0.3 4,-1.3 1,-0.3 -1,-0.1 0.762 116.7 55.7 -48.2 -27.2 -11.0 -2.6 -5.3 91 142 B A H 34X S+ 0 0 57 -4,-1.1 4,-2.0 -3,-0.4 3,-0.9 0.673 107.9 65.1-109.7 -31.8 -3.9 -6.4 0.3 97 148 B D H 3X S+ 0 0 21 -4,-3.2 4,-2.8 -5,-0.3 5,-0.2 0.656 87.9 76.8 -66.0 -15.0 -6.5 -9.2 0.8 98 149 B V H 3> S+ 0 0 77 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.934 105.7 29.7 -60.1 -48.6 -3.8 -11.5 -0.5 99 150 B V H <> S+ 0 0 74 -3,-0.9 4,-3.0 2,-0.2 -2,-0.2 0.868 116.0 60.6 -78.0 -40.0 -1.9 -11.3 2.8 100 151 B A H < S+ 0 0 46 -4,-2.0 4,-0.4 1,-0.3 -2,-0.2 0.887 110.6 41.8 -53.3 -42.2 -5.1 -10.8 4.8 101 152 B H H >< S+ 0 0 88 -4,-2.8 3,-0.7 1,-0.2 -1,-0.3 0.804 115.5 50.3 -74.4 -31.2 -6.2 -14.1 3.5 102 153 B E H >< S+ 0 0 97 -4,-1.0 3,-3.3 -5,-0.2 -2,-0.2 0.740 88.8 81.4 -77.2 -24.8 -2.8 -15.5 4.1 103 154 B V T 3< S+ 0 0 120 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.816 104.6 34.3 -48.9 -32.7 -2.8 -14.2 7.6 104 155 B Y T < S- 0 0 146 -3,-0.7 -1,-0.3 -4,-0.4 3,-0.2 -0.151 89.6-174.9-115.4 35.5 -4.8 -17.3 8.4 105 156 B S < - 0 0 66 -3,-3.3 -3,-0.1 -6,-0.2 2,-0.0 -0.026 42.9 -97.5 -35.3 120.5 -3.0 -19.6 5.9 106 157 B D - 0 0 130 1,-0.2 -1,-0.2 2,-0.1 -2,-0.0 -0.255 26.7-145.0 -49.2 114.7 -5.0 -22.8 6.1 107 158 B E 0 0 200 1,-0.3 -1,-0.2 -3,-0.2 -2,-0.1 0.622 360.0 360.0 -59.1 -11.7 -2.9 -25.0 8.4 108 159 B A 0 0 114 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.852 360.0 360.0 -66.5 360.0 -4.0 -27.8 6.1