==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 17-JUL-08 2ZPM . COMPND 2 MOLECULE: REGULATOR OF SIGMA E PROTEASE; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR K.INABA,M.SUZUKI . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5724.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 30.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 224 A P 0 0 48 0, 0.0 22,-2.6 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 63.5 18.1 6.9 17.8 2 225 A V B -A 22 0A 34 20,-0.2 82,-0.4 17,-0.0 20,-0.2 -0.928 360.0-123.9-109.8 121.4 17.1 10.5 18.2 3 226 A L - 0 0 2 18,-2.6 17,-3.2 -2,-0.5 3,-0.1 -0.457 13.7-160.1 -70.1 131.5 19.4 13.0 16.6 4 227 A E S S- 0 0 75 78,-2.2 2,-0.3 1,-0.3 -1,-0.2 0.930 71.8 -23.9 -73.2 -42.4 20.8 15.6 18.9 5 228 A N E -E 82 0B 71 77,-1.3 77,-2.6 14,-0.1 2,-0.4 -0.980 53.5-133.6-163.3 160.8 21.6 18.0 16.1 6 229 A V E -E 81 0B 29 -2,-0.3 75,-0.2 75,-0.2 13,-0.2 -0.995 26.0-127.4-125.3 127.7 22.4 18.1 12.4 7 230 A Q > - 0 0 82 73,-3.1 3,-0.6 -2,-0.4 6,-0.4 -0.421 28.7-111.8 -72.1 144.2 25.4 20.2 11.0 8 231 A P T 3 S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.307 99.7 25.5 -68.9 157.6 24.6 22.6 8.3 9 232 A N T 3 S+ 0 0 145 1,-0.2 2,-0.3 2,-0.1 -2,-0.1 0.865 99.2 123.4 61.3 33.4 26.0 21.8 4.9 10 233 A S S <> S- 0 0 6 -3,-0.6 4,-2.6 70,-0.1 5,-0.2 -0.779 79.5-105.1-117.0 169.5 26.1 18.1 5.6 11 234 A A H > S+ 0 0 4 67,-0.3 4,-1.9 -2,-0.3 54,-0.3 0.892 123.3 52.4 -59.4 -40.6 24.7 15.0 4.1 12 235 A A H 4>S+ 0 0 0 67,-2.4 5,-2.2 2,-0.2 4,-0.4 0.904 107.8 50.4 -66.0 -39.7 22.2 14.9 6.9 13 236 A S H >45S+ 0 0 55 -6,-0.4 3,-1.6 66,-0.3 -2,-0.2 0.934 110.9 49.7 -60.3 -45.2 21.1 18.5 6.2 14 237 A X H 3<5S+ 0 0 192 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.849 106.2 56.1 -61.5 -33.3 20.7 17.6 2.5 15 238 A A T 3<5S- 0 0 13 -4,-1.9 48,-0.4 -5,-0.2 -1,-0.3 0.577 119.2-113.0 -72.3 -13.9 18.6 14.7 3.4 16 239 A G T < 5 + 0 0 30 -3,-1.6 -3,-0.2 -4,-0.4 -2,-0.1 0.532 62.9 153.5 90.5 8.4 16.3 17.0 5.4 17 240 A L < - 0 0 6 -5,-2.2 2,-0.3 -6,-0.2 -1,-0.3 -0.406 20.1-172.4 -72.4 153.5 17.1 15.6 8.8 18 241 A Q > - 0 0 100 -2,-0.1 3,-2.2 -13,-0.1 -15,-0.3 -0.937 34.4 -75.3-141.4 157.3 16.8 17.7 11.9 19 242 A A T 3 S+ 0 0 51 -2,-0.3 -15,-0.2 1,-0.3 -14,-0.1 -0.256 117.7 25.7 -45.0 135.1 17.5 17.8 15.6 20 243 A G T 3 S+ 0 0 50 -17,-3.2 -1,-0.3 1,-0.3 36,-0.2 0.263 84.8 139.2 90.0 -11.9 15.0 15.6 17.4 21 244 A D < - 0 0 2 -3,-2.2 -18,-2.6 -18,-0.1 2,-0.5 -0.423 45.0-141.0 -66.9 144.7 14.2 13.3 14.5 22 245 A R E -AB 2 54A 112 32,-2.4 32,-2.1 -20,-0.2 2,-0.7 -0.923 8.1-137.7-106.6 126.0 14.0 9.6 15.4 23 246 A I E + B 0 53A 1 -22,-2.6 30,-0.2 -2,-0.5 3,-0.1 -0.775 31.1 167.5 -82.3 112.2 15.4 7.1 12.9 24 247 A V E + 0 0 39 28,-2.6 7,-2.8 -2,-0.7 2,-0.3 0.830 60.2 12.6 -95.0 -44.7 12.9 4.3 12.7 25 248 A X E -CB 30 52A 108 27,-2.0 27,-2.3 5,-0.3 2,-0.4 -0.988 52.3-162.4-136.5 150.0 14.0 2.2 9.7 26 249 A V E > S-CB 29 51A 7 3,-2.3 3,-1.8 -2,-0.3 25,-0.2 -0.999 86.8 -12.3-125.5 120.8 17.1 2.0 7.5 27 250 A D T 3 S- 0 0 62 23,-2.9 24,-0.1 -2,-0.4 -1,-0.1 0.876 130.4 -55.9 49.2 41.6 16.6 0.3 4.1 28 251 A G T 3 S+ 0 0 42 22,-0.4 -1,-0.3 1,-0.2 23,-0.1 0.373 115.4 114.3 77.2 3.5 13.2 -1.0 5.3 29 252 A Q E < S-C 26 0A 135 -3,-1.8 -3,-2.3 1,-0.0 -1,-0.2 -0.875 75.0-106.9-103.4 136.0 14.6 -2.7 8.3 30 253 A P E -C 25 0A 80 0, 0.0 2,-0.9 0, 0.0 -5,-0.3 -0.272 30.1-126.0 -58.8 138.1 13.8 -1.4 11.9 31 254 A L + 0 0 19 -7,-2.8 3,-0.1 1,-0.2 -6,-0.0 -0.774 43.7 159.7 -88.7 102.3 16.7 0.4 13.5 32 255 A T + 0 0 123 -2,-0.9 2,-0.3 1,-0.2 -1,-0.2 0.498 62.6 40.8-103.8 -12.9 17.1 -1.5 16.8 33 256 A Q >> - 0 0 119 1,-0.1 3,-0.9 -32,-0.0 4,-0.8 -0.975 66.6-144.9-137.1 128.8 20.8 -0.5 17.5 34 257 A W H >> S+ 0 0 76 -2,-0.3 4,-1.9 1,-0.2 3,-0.9 0.872 100.2 63.9 -52.6 -41.0 22.3 3.0 17.0 35 258 A V H 3> S+ 0 0 76 1,-0.3 4,-2.7 2,-0.2 -1,-0.2 0.806 93.2 62.3 -61.3 -30.6 25.6 1.4 16.1 36 259 A T H <> S+ 0 0 58 -3,-0.9 4,-2.4 2,-0.2 -1,-0.3 0.915 106.1 45.2 -57.3 -45.9 24.0 -0.2 13.0 37 260 A F H < S+ 0 0 11 -4,-2.4 3,-0.9 1,-0.2 -2,-0.2 0.960 114.9 47.3 -63.4 -52.9 27.1 5.5 7.3 42 265 A R H 3< S+ 0 0 101 -4,-2.6 35,-2.4 1,-0.3 -2,-0.2 0.873 117.9 40.6 -63.6 -36.2 30.8 4.9 7.8 43 266 A D H 3< S+ 0 0 92 -4,-2.6 -1,-0.3 1,-0.2 -2,-0.2 0.497 112.0 54.7 -91.1 -6.5 31.0 1.9 5.4 44 267 A N X< + 0 0 39 -3,-0.9 3,-2.0 -4,-0.8 -1,-0.2 -0.258 62.0 172.0-130.1 52.2 28.8 3.3 2.6 45 268 A P T 3 S+ 0 0 51 0, 0.0 22,-0.2 0, 0.0 23,-0.1 -0.345 77.3 14.5 -57.6 135.9 30.0 6.7 1.4 46 269 A G T 3 S+ 0 0 55 20,-2.7 2,-0.3 1,-0.3 21,-0.1 0.305 97.1 122.4 82.9 -9.1 28.0 7.7 -1.7 47 270 A X < - 0 0 143 -3,-2.0 2,-0.6 -6,-0.1 -1,-0.3 -0.675 66.1-119.2 -87.9 140.1 25.3 5.1 -1.3 48 271 A S - 0 0 69 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.664 27.9-163.0 -79.5 121.1 21.7 6.1 -1.0 49 272 A L E - D 0 64A 4 15,-3.1 15,-2.7 -2,-0.6 2,-0.7 -0.897 11.9-140.4-106.6 125.0 20.2 5.1 2.3 50 273 A A E - D 0 63A 56 -2,-0.5 -23,-2.9 13,-0.2 -22,-0.4 -0.764 24.7-168.2 -89.3 115.6 16.4 5.0 2.6 51 274 A L E -BD 26 62A 2 11,-2.8 11,-2.3 -2,-0.7 2,-0.5 -0.842 19.3-162.7-105.0 141.9 15.3 6.3 5.9 52 275 A E E +BD 25 61A 86 -27,-2.3 -28,-2.6 -2,-0.4 -27,-2.0 -0.993 26.8 174.6-114.3 128.2 12.0 6.3 7.6 53 276 A I E -BD 23 60A 2 7,-2.8 7,-2.1 -2,-0.5 2,-0.4 -0.790 29.2-132.0-123.6 165.6 11.9 8.7 10.5 54 277 A E E -BD 22 59A 87 -32,-2.1 -32,-2.4 -2,-0.3 2,-0.4 -0.998 21.0-178.4-121.0 133.1 9.4 10.1 13.0 55 278 A R E > S- D 0 58A 55 3,-2.7 3,-2.2 -2,-0.4 -34,-0.1 -0.984 75.3 -20.7-131.0 113.5 9.2 13.8 13.5 56 279 A Q T 3 S- 0 0 199 -2,-0.4 -1,-0.1 1,-0.3 -35,-0.1 0.895 129.2 -50.2 47.5 46.3 6.8 15.1 16.1 57 280 A G T 3 S+ 0 0 73 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.410 117.8 108.4 81.5 -4.6 4.8 11.9 15.9 58 281 A S E < -D 55 0A 68 -3,-2.2 -3,-2.7 1,-0.0 2,-0.3 -0.841 66.5-120.3-116.2 147.9 4.6 11.8 12.2 59 282 A P E +D 54 0A 94 0, 0.0 2,-0.3 0, 0.0 -5,-0.2 -0.589 29.0 177.8 -81.5 142.0 6.3 9.6 9.7 60 283 A L E -D 53 0A 69 -7,-2.1 -7,-2.8 -2,-0.3 2,-0.5 -0.993 21.6-141.6-137.9 144.6 8.6 10.9 6.9 61 284 A S E +D 52 0A 99 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.921 29.0 176.3-103.5 128.8 10.6 9.1 4.3 62 285 A L E -D 51 0A 30 -11,-2.3 -11,-2.8 -2,-0.5 2,-0.5 -0.888 27.2-132.7-131.9 160.3 14.1 10.6 3.5 63 286 A T E -D 50 0A 87 -48,-0.4 2,-0.5 -2,-0.3 -13,-0.2 -0.972 21.8-170.9-119.8 120.1 17.1 9.8 1.4 64 287 A L E -D 49 0A 0 -15,-2.7 -15,-3.1 -2,-0.5 -52,-0.1 -0.950 7.3-176.0-114.5 126.5 20.5 10.1 3.0 65 288 A I - 0 0 75 -2,-0.5 -17,-0.2 -54,-0.3 -51,-0.1 -0.916 25.4-135.1-123.8 101.7 23.8 9.8 1.0 66 289 A P - 0 0 2 0, 0.0 -20,-2.7 0, 0.0 13,-0.2 -0.289 15.0-144.2 -54.5 142.6 26.8 9.8 3.2 67 290 A E E -F 78 0C 62 11,-2.4 11,-2.1 -22,-0.2 2,-0.4 -0.180 24.0-105.1 -93.1-175.5 29.7 12.1 2.1 68 291 A S E -F 77 0C 76 9,-0.2 9,-0.2 -23,-0.1 -1,-0.1 -0.913 26.1-175.5-125.0 146.0 33.3 11.2 2.6 69 292 A X E -F 76 0C 141 7,-2.4 7,-2.2 -2,-0.4 5,-0.0 -0.923 39.8-109.7-128.3 163.5 36.1 12.0 4.8 70 293 A P - 0 0 102 0, 0.0 4,-0.5 0, 0.0 3,-0.5 0.736 42.0-168.5 -66.3 -21.3 39.6 10.7 4.5 71 294 A G - 0 0 41 1,-0.2 2,-0.3 2,-0.1 4,-0.2 -0.307 47.2 -68.1 63.6-150.5 39.6 8.6 7.6 72 295 A N S S- 0 0 172 2,-0.5 -1,-0.2 3,-0.0 3,-0.0 -0.686 114.9 -16.7-140.5 82.7 43.1 7.4 8.5 73 296 A G S S+ 0 0 85 -3,-0.5 2,-0.3 -2,-0.3 -2,-0.1 0.199 138.3 45.8 107.6 -12.0 44.1 5.0 5.8 74 297 A X S S- 0 0 215 -4,-0.5 -2,-0.5 -5,-0.0 -5,-0.1 -0.863 86.2-116.0-162.9 120.7 40.6 4.4 4.4 75 298 A A - 0 0 58 -2,-0.3 2,-0.3 -4,-0.2 -4,-0.1 -0.228 33.4-159.3 -62.5 149.6 37.9 7.0 3.6 76 299 A I E -F 69 0C 44 -7,-2.2 -7,-2.4 -32,-0.1 -33,-0.2 -0.896 20.6-103.0-126.2 156.2 34.8 6.8 5.6 77 300 A G E -F 68 0C 4 -35,-2.4 2,-0.3 -2,-0.3 -9,-0.2 -0.512 36.9-172.3 -74.9 153.0 31.2 8.0 5.2 78 301 A F E +F 67 0C 66 -11,-2.1 -11,-2.4 -2,-0.2 -67,-0.3 -0.989 19.1 175.0-152.2 131.7 30.2 11.0 7.1 79 302 A V - 0 0 11 -2,-0.3 -67,-2.4 -13,-0.2 -66,-0.3 0.516 45.9-115.9-121.4 -10.3 26.8 12.6 7.6 80 303 A G + 0 0 2 1,-0.2 -73,-3.1 -69,-0.1 2,-0.5 0.838 59.2 150.3 76.6 33.3 27.2 15.5 10.1 81 304 A I E -E 6 0B 26 -75,-0.2 -1,-0.2 -69,-0.0 -75,-0.2 -0.876 39.8-148.2-105.9 130.1 25.0 14.1 12.8 82 305 A E E -E 5 0B 81 -77,-2.6 -78,-2.2 -2,-0.5 -77,-1.3 -0.859 28.4-132.8 -89.2 113.2 25.5 14.8 16.5 83 306 A P - 0 0 71 0, 0.0 -80,-0.1 0, 0.0 3,-0.1 -0.243 38.4 -69.3 -65.5 159.1 24.4 11.7 18.4 84 307 A X - 0 0 178 -82,-0.4 2,-0.1 1,-0.1 -81,-0.1 -0.185 59.8-107.6 -42.1 131.4 22.1 11.8 21.4 85 308 A V 0 0 99 1,-0.1 -1,-0.1 -3,-0.1 -3,-0.0 -0.443 360.0 360.0 -64.9 139.8 24.0 13.3 24.4 86 309 A I 0 0 224 -2,-0.1 -1,-0.1 -3,-0.1 -2,-0.1 0.527 360.0 360.0-112.9 360.0 24.9 10.8 27.1