==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-MAR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 08-JUN-11 3ZQ7 . COMPND 2 MOLECULE: KDP OPERON TRANSCRIPTIONAL REGULATORY PROTEIN KDP . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR D.N.PATIL,S.TOMAR,P.KUMAR . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5962.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 68.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 20.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 30.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A P 0 0 190 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -28.9 11.4 8.8 -9.0 2 6 A D - 0 0 113 1,-0.1 12,-0.1 3,-0.0 0, 0.0 0.928 360.0-144.5 59.0 102.0 13.7 6.1 -7.5 3 7 A P S S+ 0 0 68 0, 0.0 11,-3.1 0, 0.0 2,-0.8 0.374 76.6 94.6 -85.5 13.0 13.9 2.8 -9.3 4 8 A L E -A 13 0A 72 9,-0.2 2,-0.4 10,-0.1 9,-0.2 -0.865 56.8-177.9-105.4 103.2 14.2 0.9 -6.1 5 9 A V E -A 12 0A 30 7,-2.9 7,-3.5 -2,-0.8 2,-0.4 -0.858 5.9-172.8-104.8 135.5 10.8 -0.3 -5.0 6 10 A K E +A 11 0A 140 -2,-0.4 5,-0.2 5,-0.2 3,-0.1 -0.995 17.5 151.1-126.9 131.4 10.1 -2.2 -1.7 7 11 A F - 0 0 23 3,-2.3 4,-0.1 -2,-0.4 -1,-0.1 0.700 67.9 -22.4-124.4 -57.8 6.7 -3.8 -0.6 8 12 A S S S- 0 0 56 2,-0.3 72,-0.1 71,-0.1 71,-0.0 0.124 121.3 -31.9-117.6-113.5 6.8 -6.9 1.6 9 13 A D S S+ 0 0 54 70,-0.2 13,-0.5 -3,-0.1 2,-0.4 0.524 121.2 100.9 -77.1 -2.9 9.8 -9.2 1.8 10 14 A V - 0 0 0 11,-0.2 -3,-2.3 69,-0.1 2,-0.5 -0.668 49.6-177.6 -90.7 126.3 10.2 -8.1 -1.9 11 15 A T E -AB 6 20A 13 9,-3.2 9,-3.0 -2,-0.4 2,-0.5 -0.995 10.9-166.1-117.1 128.3 12.6 -5.5 -3.1 12 16 A V E -AB 5 19A 0 -7,-3.5 -7,-2.9 -2,-0.5 2,-0.8 -0.954 13.5-157.7-116.4 117.3 12.4 -4.7 -6.9 13 17 A D E >> -AB 4 18A 46 5,-3.4 5,-2.2 -2,-0.5 4,-1.2 -0.861 10.6-169.4 -91.8 111.6 15.1 -2.8 -8.8 14 18 A L T 45S+ 0 0 23 -11,-3.1 -1,-0.2 -2,-0.8 -10,-0.1 0.765 80.0 51.4 -75.7 -30.1 13.1 -1.6 -11.8 15 19 A A T 45S+ 0 0 69 -12,-0.4 -1,-0.2 1,-0.2 -11,-0.1 0.941 117.8 35.5 -74.1 -52.6 16.1 -0.3 -13.8 16 20 A A T 45S- 0 0 58 -13,-0.1 -2,-0.2 2,-0.1 -1,-0.2 0.648 106.0-127.0 -72.5 -20.0 18.2 -3.5 -13.5 17 21 A R T <5 + 0 0 169 -4,-1.2 2,-0.4 1,-0.2 11,-0.2 0.929 61.9 139.1 68.5 43.9 15.1 -5.6 -13.8 18 22 A V E < -B 13 0A 43 -5,-2.2 -5,-3.4 9,-0.1 2,-0.4 -0.960 34.3-165.8-126.8 145.9 16.0 -7.5 -10.6 19 23 A I E -BC 12 26A 2 7,-0.6 7,-2.7 -2,-0.4 2,-0.4 -0.987 2.7-165.3-138.1 129.1 13.9 -8.7 -7.7 20 24 A H E -BC 11 25A 55 -9,-3.0 -9,-3.2 -2,-0.4 2,-0.3 -0.926 7.9-156.1-115.0 133.3 14.7 -10.0 -4.2 21 25 A R E > S- C 0 24A 55 3,-2.6 3,-0.6 -2,-0.4 -11,-0.2 -0.922 75.0 -31.6-152.4 124.5 12.4 -11.8 -1.7 22 26 A G T 3 S- 0 0 58 -13,-0.5 -12,-0.1 1,-0.3 -1,-0.1 -0.475 129.8 -50.6-132.1 66.6 12.9 -11.8 1.2 23 27 A E T 3 S+ 0 0 117 -14,-0.1 -1,-0.3 1,-0.1 2,-0.3 0.327 110.5 78.5-134.8 134.9 15.6 -11.7 0.3 24 28 A E E < S-C 21 0A 147 -3,-0.6 -3,-2.6 -5,-0.1 2,-0.3 -0.876 88.6 -68.1-144.0 164.8 17.4 -13.9 -2.2 25 29 A E E -C 20 0A 83 -2,-0.3 2,-0.5 -5,-0.2 -5,-0.3 -0.387 41.3-158.8 -68.9 118.1 16.9 -13.4 -6.0 26 30 A V E -C 19 0A 20 -7,-2.7 2,-0.6 -2,-0.3 -7,-0.6 -0.825 19.6-136.1 -84.0 128.8 13.4 -14.3 -7.4 27 31 A H - 0 0 125 -2,-0.5 2,-0.3 -9,-0.1 -9,-0.1 -0.779 22.8-169.3 -93.6 116.8 13.8 -14.9 -11.1 28 32 A L - 0 0 36 -2,-0.6 -9,-0.0 -11,-0.2 47,-0.0 -0.726 23.1-117.9-102.9 154.7 11.1 -13.4 -13.3 29 33 A T > - 0 0 52 -2,-0.3 4,-1.9 1,-0.1 5,-0.2 -0.552 33.2-112.1 -80.2 148.4 10.3 -13.9 -16.9 30 34 A P H > S+ 0 0 105 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.807 121.1 46.8 -50.6 -37.6 10.7 -10.7 -19.2 31 35 A I H > S+ 0 0 58 2,-0.2 4,-1.5 1,-0.2 5,-0.2 0.905 111.1 50.3 -69.8 -50.6 6.9 -10.7 -19.7 32 36 A E H > S+ 0 0 12 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.750 111.6 51.3 -57.1 -28.3 6.2 -11.2 -15.9 33 37 A F H X S+ 0 0 15 -4,-1.9 4,-2.9 2,-0.2 -2,-0.2 0.860 104.5 52.1 -81.0 -37.6 8.6 -8.3 -15.3 34 38 A R H X S+ 0 0 107 -4,-1.5 4,-2.0 2,-0.2 -2,-0.2 0.825 113.5 48.0 -67.8 -27.3 7.0 -5.8 -17.7 35 39 A L H X S+ 0 0 1 -4,-1.5 4,-2.5 2,-0.2 5,-0.2 0.933 109.5 50.3 -76.2 -48.7 3.7 -6.5 -15.9 36 40 A L H X S+ 0 0 0 -4,-1.8 4,-3.3 1,-0.2 5,-0.2 0.970 113.3 48.2 -50.1 -53.7 5.2 -6.2 -12.5 37 41 A A H X S+ 0 0 7 -4,-2.9 4,-3.9 2,-0.2 5,-0.3 0.928 109.7 49.5 -51.0 -55.4 6.7 -2.8 -13.6 38 42 A V H X S+ 0 0 1 -4,-2.0 4,-0.7 1,-0.2 -1,-0.2 0.943 117.2 43.9 -50.1 -49.9 3.5 -1.5 -15.1 39 43 A L H >< S+ 0 0 3 -4,-2.5 3,-0.7 1,-0.2 -2,-0.2 0.895 114.1 48.1 -62.6 -49.2 1.7 -2.5 -11.8 40 44 A L H >< S+ 0 0 10 -4,-3.3 3,-1.2 1,-0.2 -1,-0.2 0.873 111.2 52.1 -56.7 -43.0 4.5 -1.1 -9.6 41 45 A N H 3< S+ 0 0 101 -4,-3.9 -1,-0.2 1,-0.3 -2,-0.2 0.558 113.6 44.0 -74.5 -12.0 4.5 2.2 -11.6 42 46 A N T X< S+ 0 0 20 -3,-0.7 3,-2.4 -4,-0.7 57,-0.4 -0.031 85.9 173.3-117.0 28.4 0.7 2.5 -11.1 43 47 A A T < + 0 0 49 -3,-1.2 57,-0.2 1,-0.3 -3,-0.1 -0.017 67.6 3.9 -37.0 124.2 0.8 1.5 -7.4 44 48 A G T 3 S+ 0 0 33 55,-3.3 2,-0.3 1,-0.2 -1,-0.3 0.268 102.1 113.9 83.5 -13.8 -2.6 1.9 -5.8 45 49 A K < - 0 0 120 -3,-2.4 54,-0.6 -6,-0.2 2,-0.6 -0.713 69.5-122.7 -89.5 140.3 -4.5 2.8 -8.9 46 50 A V E -D 98 0B 57 -2,-0.3 2,-0.3 52,-0.2 52,-0.2 -0.783 31.4-162.9 -88.2 119.2 -7.1 0.4 -10.3 47 51 A L E -D 97 0B 2 50,-3.1 50,-2.6 -2,-0.6 45,-0.2 -0.809 12.7-126.7-107.7 141.1 -6.2 -0.6 -13.9 48 52 A T E > -D 96 0B 24 -2,-0.3 4,-2.1 48,-0.2 48,-0.3 -0.407 26.2-111.8 -82.4 160.0 -8.5 -2.2 -16.5 49 53 A Q H > S+ 0 0 53 46,-1.7 4,-2.1 1,-0.2 5,-0.2 0.899 121.2 49.6 -58.2 -41.3 -7.7 -5.3 -18.4 50 54 A R H > S+ 0 0 136 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.949 107.9 53.2 -63.4 -47.2 -7.4 -3.3 -21.6 51 55 A Q H > S+ 0 0 70 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.870 113.1 45.0 -49.5 -41.7 -5.1 -0.7 -19.9 52 56 A L H X S+ 0 0 0 -4,-2.1 4,-1.5 2,-0.2 5,-0.3 0.850 111.9 49.3 -76.3 -36.9 -2.8 -3.6 -18.8 53 57 A L H X>S+ 0 0 0 -4,-2.1 5,-2.1 1,-0.2 4,-1.9 0.825 111.8 52.2 -70.9 -36.1 -2.8 -5.4 -22.1 54 58 A N H <5S+ 0 0 90 -4,-2.6 -2,-0.2 3,-0.2 -1,-0.2 0.876 113.6 41.6 -56.6 -48.2 -2.0 -2.1 -23.8 55 59 A Q H <5S+ 0 0 73 -4,-1.5 -2,-0.2 -5,-0.2 -1,-0.2 0.699 122.2 38.5 -84.0 -22.8 1.0 -1.4 -21.5 56 60 A V H <5S- 0 0 21 -4,-1.5 -3,-0.2 -5,-0.1 -2,-0.2 0.847 141.5 -6.0 -93.7 -41.3 2.4 -4.9 -21.4 57 61 A W T <5 - 0 0 71 -4,-1.9 -3,-0.2 -5,-0.3 -4,-0.1 0.752 70.0-151.6-120.7 -70.7 1.8 -5.9 -25.1 58 62 A G S S+ 0 0 86 -2,-0.4 2,-1.0 -13,-0.0 3,-0.9 -0.957 119.4 66.3-112.8 -4.3 -8.3 -7.3 -25.9 63 67 A E T 3 S+ 0 0 163 1,-0.3 -2,-0.1 2,-0.1 -3,-0.0 0.109 101.8 60.9 -67.9 26.0 -8.9 -10.8 -27.3 64 68 A H T >> + 0 0 58 -2,-1.0 4,-0.8 -4,-0.3 3,-0.7 -0.172 56.1 131.7-148.7 37.5 -6.0 -12.0 -25.0 65 69 A S H <> + 0 0 35 -3,-0.9 4,-1.0 1,-0.2 -2,-0.1 0.654 67.9 66.3 -65.8 -21.2 -7.4 -11.2 -21.5 66 70 A H H 3> S+ 0 0 89 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.825 90.6 59.5 -76.8 -34.6 -6.5 -14.7 -20.4 67 71 A Y H <> S+ 0 0 103 -3,-0.7 4,-2.2 1,-0.2 -1,-0.2 0.882 104.0 53.8 -59.9 -38.9 -2.7 -14.1 -20.7 68 72 A L H X S+ 0 0 0 -4,-0.8 4,-1.4 1,-0.2 -1,-0.2 0.848 109.6 46.5 -63.6 -38.0 -3.2 -11.3 -18.2 69 73 A R H X S+ 0 0 161 -4,-1.0 4,-1.8 2,-0.2 -2,-0.2 0.821 112.3 51.0 -70.5 -37.6 -4.9 -13.7 -15.7 70 74 A I H X S+ 0 0 84 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.844 113.5 44.2 -69.4 -37.5 -2.2 -16.4 -16.3 71 75 A Y H X S+ 0 0 50 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.712 109.3 54.9 -85.4 -24.4 0.6 -13.9 -15.6 72 76 A M H X S+ 0 0 1 -4,-1.4 4,-2.5 -5,-0.2 5,-0.2 0.922 108.9 50.9 -65.7 -45.1 -1.1 -12.3 -12.6 73 77 A G H X S+ 0 0 18 -4,-1.8 4,-2.8 1,-0.2 -2,-0.2 0.938 109.5 49.2 -52.6 -50.8 -1.3 -15.9 -11.3 74 78 A H H X S+ 0 0 58 -4,-1.7 4,-2.1 1,-0.2 -1,-0.2 0.879 110.3 51.4 -59.7 -38.5 2.4 -16.4 -11.9 75 79 A L H X S+ 0 0 0 -4,-1.7 4,-2.3 1,-0.2 -1,-0.2 0.904 112.7 45.2 -66.1 -43.3 3.2 -13.1 -10.1 76 80 A R H X S+ 0 0 34 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.891 109.0 55.7 -62.7 -45.9 1.2 -14.1 -7.1 77 81 A Q H < S+ 0 0 129 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.947 118.2 34.9 -54.0 -47.6 2.7 -17.6 -7.0 78 82 A K H < S+ 0 0 75 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.840 130.9 26.6 -78.2 -33.5 6.2 -16.0 -6.9 79 83 A L H < S+ 0 0 0 -4,-2.3 2,-0.3 -5,-0.2 -70,-0.2 0.538 99.3 84.7-112.9 -7.3 5.6 -12.9 -4.7 80 84 A E < - 0 0 8 -4,-2.2 4,-0.1 -5,-0.2 -72,-0.0 -0.728 63.7-141.9-111.2 144.6 2.6 -13.5 -2.5 81 85 A Q S S+ 0 0 134 1,-0.4 -1,-0.1 -2,-0.3 3,-0.1 0.890 105.0 18.8 -68.9 -42.4 2.5 -15.2 0.9 82 86 A D S > S- 0 0 70 3,-0.4 3,-1.4 1,-0.1 -1,-0.4 -0.939 71.0-164.4-128.6 102.9 -0.8 -16.8 -0.0 83 87 A P T 3 S+ 0 0 57 0, 0.0 -1,-0.1 0, 0.0 -6,-0.1 0.835 93.7 56.4 -55.7 -33.0 -1.3 -16.8 -3.8 84 88 A A T 3 S+ 0 0 88 1,-0.3 -7,-0.0 -3,-0.1 -8,-0.0 0.648 115.2 37.4 -71.6 -17.9 -5.0 -17.6 -3.1 85 89 A R S < S- 0 0 155 -3,-1.4 -3,-0.4 5,-0.0 -1,-0.3 -0.671 86.3-161.6-132.8 76.0 -5.3 -14.4 -0.8 86 90 A P - 0 0 28 0, 0.0 5,-0.1 0, 0.0 -6,-0.0 -0.329 16.7-177.0 -63.3 142.0 -3.2 -11.7 -2.5 87 91 A R S S+ 0 0 142 13,-0.1 3,-0.1 3,-0.1 -7,-0.0 0.638 86.5 17.6-104.1 -28.0 -2.2 -8.8 -0.3 88 92 A H S S+ 0 0 15 1,-0.1 12,-2.6 11,-0.1 2,-1.2 0.728 118.0 61.4-109.7 -36.8 -0.4 -6.7 -3.1 89 93 A F E S+E 99 0B 2 10,-0.2 2,-0.3 -17,-0.1 10,-0.2 -0.619 77.7 179.7 -98.4 77.2 -1.6 -8.2 -6.3 90 94 A I E -E 98 0B 41 8,-2.2 8,-3.7 -2,-1.2 2,-0.4 -0.587 21.6-139.4 -93.8 135.9 -5.3 -7.4 -6.0 91 95 A T E -E 97 0B 56 -2,-0.3 2,-0.8 6,-0.2 6,-0.3 -0.736 0.9-154.6 -89.0 133.2 -8.2 -8.2 -8.5 92 96 A E E >> -E 96 0B 47 4,-2.1 3,-2.6 -2,-0.4 4,-2.2 -0.886 36.4-124.3-100.9 94.3 -11.0 -5.7 -9.2 93 97 A T T 34 S+ 0 0 129 -2,-0.8 4,-0.0 1,-0.3 0, 0.0 -0.053 86.7 1.9 -43.6 133.1 -13.6 -8.2 -10.3 94 98 A G T 34 S+ 0 0 78 1,-0.2 -1,-0.3 2,-0.1 -45,-0.1 0.295 132.5 59.0 70.4 -9.7 -15.0 -7.5 -13.7 95 99 A I T <4 S- 0 0 90 -3,-2.6 -46,-1.7 1,-0.3 2,-0.2 0.820 102.4 -96.1-110.8 -56.9 -12.7 -4.5 -14.1 96 100 A G E < -DE 48 92B 1 -4,-2.2 -4,-2.1 -48,-0.3 2,-0.3 -0.779 52.2 -47.7 167.9-130.7 -9.0 -5.3 -13.9 97 101 A Y E -DE 47 91B 6 -50,-2.6 -50,-3.1 -6,-0.3 2,-0.4 -0.962 27.1-155.7-148.7 159.3 -6.4 -5.1 -11.1 98 102 A R E -DE 46 90B 99 -8,-3.7 -8,-2.2 -2,-0.3 2,-0.5 -0.999 13.1-146.7-140.9 133.3 -4.9 -3.0 -8.3 99 103 A F E - E 0 89B 2 -54,-0.6 -55,-3.3 -2,-0.4 2,-0.6 -0.907 10.6-148.9-112.1 130.9 -1.5 -3.2 -6.8 100 104 A M 0 0 51 -12,-2.6 -57,-0.1 -2,-0.5 -13,-0.1 -0.861 360.0 360.0-108.8 116.9 -0.9 -2.4 -3.1 101 105 A L 0 0 131 -2,-0.6 -95,-0.2 -61,-0.0 -1,-0.1 -0.430 360.0 360.0 95.2 360.0 2.4 -0.9 -1.8