==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-JUN-05 1ZV7 . COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS FRA; . AUTHOR Y.DENG,J.LIU,Q.ZHENG,W.YONG,J.DAI,M.LU . 71 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5436.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 90.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 63 88.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D > 0 0 188 0, 0.0 4,-0.8 0, 0.0 3,-0.5 0.000 360.0 360.0 360.0 -25.5 -19.3 18.2 22.5 2 2 A I H >> + 0 0 135 1,-0.3 4,-2.0 2,-0.2 3,-0.6 0.874 360.0 59.4 -62.4 -40.9 -16.0 17.6 20.5 3 3 A S H 3> S+ 0 0 88 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.825 99.3 64.2 -46.1 -33.2 -14.8 20.9 22.1 4 4 A G H 3> S+ 0 0 32 -3,-0.5 4,-2.0 2,-0.2 -2,-0.2 0.874 98.9 46.9 -63.7 -45.2 -15.5 18.7 25.2 5 5 A I H 0 0 87 0, 0.0 4,-1.4 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0-103.9 14.2 4.7 61.2 41 5 B I H > + 0 0 72 1,-0.2 4,-2.6 2,-0.2 3,-0.2 0.906 360.0 60.2 -59.4 -38.2 14.6 7.5 58.6 42 6 B N H > S+ 0 0 95 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.888 98.5 54.9 -59.4 -38.5 15.7 4.6 56.3 43 7 B A H > S+ 0 0 54 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.906 111.9 44.5 -58.3 -42.8 12.3 2.9 56.7 44 8 B S H X S+ 0 0 59 -4,-1.4 4,-2.9 2,-0.2 5,-0.3 0.848 108.3 57.1 -71.6 -35.6 10.6 6.1 55.5 45 9 B V H X S+ 0 0 18 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.933 109.9 45.9 -58.9 -44.9 13.1 6.6 52.7 46 10 B V H X S+ 0 0 98 -4,-2.3 4,-1.9 -5,-0.2 -2,-0.2 0.936 114.4 47.3 -61.6 -45.7 12.1 3.2 51.3 47 11 B N H X S+ 0 0 102 -4,-1.9 4,-1.5 1,-0.2 -2,-0.2 0.903 113.7 47.2 -67.1 -39.6 8.4 3.8 51.7 48 12 B I H X S+ 0 0 52 -4,-2.9 4,-2.3 1,-0.2 -1,-0.2 0.900 108.0 54.8 -70.7 -40.1 8.5 7.3 50.1 49 13 B Q H X S+ 0 0 70 -4,-2.4 4,-2.6 -5,-0.3 -1,-0.2 0.912 106.4 53.5 -56.3 -42.5 10.6 6.0 47.2 50 14 B K H X S+ 0 0 85 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.882 109.6 48.2 -58.5 -39.3 7.9 3.4 46.6 51 15 B E H X S+ 0 0 92 -4,-1.5 4,-2.6 2,-0.2 -1,-0.2 0.833 108.2 52.3 -73.5 -34.0 5.3 6.2 46.5 52 16 B I H X S+ 0 0 0 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.921 110.4 49.9 -64.3 -41.7 7.3 8.3 44.1 53 17 B D H X S+ 0 0 78 -4,-2.6 4,-1.6 1,-0.2 -2,-0.2 0.933 112.5 47.5 -60.1 -42.7 7.5 5.2 41.9 54 18 B R H X S+ 0 0 115 -4,-2.2 4,-1.9 1,-0.2 -1,-0.2 0.909 111.3 50.8 -63.9 -44.5 3.7 4.8 42.2 55 19 B L H X S+ 0 0 28 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.894 106.2 54.3 -61.0 -40.1 3.2 8.5 41.4 56 20 B N H X S+ 0 0 68 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.860 106.6 52.8 -64.2 -32.3 5.3 8.3 38.3 57 21 B E H X S+ 0 0 101 -4,-1.6 4,-3.0 2,-0.2 5,-0.3 0.897 106.0 54.1 -67.7 -41.3 3.1 5.4 37.2 58 22 B V H X S+ 0 0 65 -4,-1.9 4,-2.6 2,-0.2 5,-0.2 0.953 112.2 43.6 -53.3 -52.8 0.0 7.7 37.7 59 23 B A H X S+ 0 0 5 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.922 115.5 47.8 -62.6 -46.3 1.6 10.4 35.5 60 24 B K H X S+ 0 0 109 -4,-2.4 4,-1.7 2,-0.2 -1,-0.2 0.920 114.4 45.5 -58.0 -48.8 2.7 7.9 32.8 61 25 B N H X S+ 0 0 61 -4,-3.0 4,-1.8 2,-0.2 -2,-0.2 0.878 111.5 51.9 -69.7 -35.5 -0.6 6.1 32.6 62 26 B L H X S+ 0 0 62 -4,-2.6 4,-2.2 -5,-0.3 -1,-0.2 0.914 107.5 54.0 -62.8 -39.2 -2.6 9.3 32.5 63 27 B N H X S+ 0 0 64 -4,-2.3 4,-1.9 -5,-0.2 -2,-0.2 0.880 105.6 52.6 -61.9 -37.3 -0.4 10.4 29.7 64 28 B E H X S+ 0 0 101 -4,-1.7 4,-1.8 1,-0.2 -1,-0.2 0.903 110.1 48.1 -66.9 -35.0 -1.3 7.2 27.8 65 29 B S H X S+ 0 0 60 -4,-1.8 4,-2.6 2,-0.2 -1,-0.2 0.848 106.5 57.8 -69.9 -34.1 -5.0 8.0 28.3 66 30 B L H X S+ 0 0 1 -4,-2.2 4,-3.2 2,-0.2 5,-0.2 0.907 106.6 48.5 -62.4 -40.8 -4.4 11.5 27.1 67 31 B I H X S+ 0 0 78 -4,-1.9 4,-1.8 2,-0.2 -2,-0.2 0.918 109.5 52.1 -66.0 -42.1 -3.0 10.1 23.8 68 32 B D H X S+ 0 0 109 -4,-1.8 4,-1.1 1,-0.2 -2,-0.2 0.930 116.6 40.7 -57.8 -45.5 -6.0 7.8 23.5 69 33 B L H < S+ 0 0 54 -4,-2.6 -2,-0.2 2,-0.2 -1,-0.2 0.882 109.7 56.7 -71.0 -42.5 -8.3 10.9 24.0 70 34 B Q H < S+ 0 0 115 -4,-3.2 -1,-0.2 2,-0.2 -2,-0.2 0.821 105.8 54.5 -57.4 -34.5 -6.3 13.3 21.8 71 35 B E H < 0 0 159 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.865 360.0 360.0 -72.4 -35.6 -6.7 10.8 19.0 72 36 B L < 0 0 143 -4,-1.1 -2,-0.2 -3,-0.2 -1,-0.2 0.847 360.0 360.0 -71.5 360.0 -10.5 10.9 19.5