==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-JUN-05 1ZVA . COMPND 2 MOLECULE: E2 GLYCOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; . AUTHOR Y.DENG,J.LIU,Q.ZHENG,W.YONG,J.DAI,M.LU . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5765.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 88.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 81.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A > 0 0 121 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -70.4 16.8 74.8 2.4 2 2 A L H > + 0 0 123 1,-0.2 4,-1.6 2,-0.2 0, 0.0 0.883 360.0 48.8 -60.5 -43.3 17.9 74.5 6.0 3 3 A G H > S+ 0 0 54 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.930 112.3 44.6 -62.7 -50.8 14.4 73.9 7.3 4 4 A K H > S+ 0 0 169 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.870 113.2 52.1 -62.5 -39.0 13.2 71.2 4.8 5 5 A L H X S+ 0 0 61 -4,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.885 101.9 53.5 -71.0 -44.9 16.5 69.2 5.1 6 6 A Q H X S+ 0 0 116 -4,-1.6 4,-3.0 1,-0.2 -1,-0.2 0.870 106.4 53.8 -65.5 -36.9 16.9 68.7 8.8 7 7 A D H X S+ 0 0 90 -4,-1.0 4,-2.5 2,-0.2 5,-0.3 0.921 108.9 49.4 -60.1 -45.2 13.5 67.2 9.1 8 8 A V H X S+ 0 0 35 -4,-1.3 4,-2.4 1,-0.2 5,-0.2 0.929 112.9 48.0 -57.4 -46.8 14.3 64.7 6.4 9 9 A V H X S+ 0 0 72 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.916 112.6 47.4 -62.1 -47.5 17.6 63.8 8.2 10 10 A N H X S+ 0 0 91 -4,-3.0 4,-2.2 2,-0.2 -2,-0.2 0.950 114.9 44.5 -58.3 -50.6 15.9 63.4 11.6 11 11 A Q H X S+ 0 0 120 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.898 118.2 43.9 -65.6 -40.8 13.1 61.2 10.4 12 12 A N H X S+ 0 0 15 -4,-2.4 4,-2.9 -5,-0.3 -1,-0.2 0.860 110.2 54.0 -75.2 -33.3 15.3 59.1 8.3 13 13 A A H X S+ 0 0 54 -4,-2.7 4,-2.5 -5,-0.2 -2,-0.2 0.900 111.9 47.1 -62.2 -41.6 18.1 58.8 10.9 14 14 A Q H X S+ 0 0 112 -4,-2.2 4,-2.1 -5,-0.2 -2,-0.2 0.917 113.4 47.0 -64.0 -45.5 15.4 57.5 13.3 15 15 A A H X S+ 0 0 37 -4,-2.1 4,-2.8 1,-0.2 -2,-0.2 0.922 113.3 49.8 -62.4 -41.3 14.0 55.1 10.7 16 16 A L H X S+ 0 0 70 -4,-2.9 4,-2.7 2,-0.2 5,-0.2 0.916 108.3 51.9 -65.4 -41.9 17.5 53.9 9.9 17 17 A N H X S+ 0 0 78 -4,-2.5 4,-1.7 1,-0.2 -1,-0.2 0.919 113.0 45.9 -62.1 -39.9 18.3 53.3 13.6 18 18 A T H X S+ 0 0 72 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.925 112.4 49.5 -66.0 -45.5 15.2 51.3 13.9 19 19 A L H X S+ 0 0 10 -4,-2.8 4,-3.0 1,-0.2 5,-0.2 0.881 108.8 53.0 -65.0 -37.4 15.8 49.3 10.7 20 20 A V H X S+ 0 0 69 -4,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.908 109.0 50.0 -64.0 -39.6 19.4 48.5 11.7 21 21 A K H X S+ 0 0 125 -4,-1.7 4,-2.2 -5,-0.2 -2,-0.2 0.942 112.7 47.0 -65.0 -41.4 18.1 47.1 15.1 22 22 A Q H X S+ 0 0 76 -4,-2.3 4,-2.5 1,-0.2 5,-0.3 0.925 112.4 48.7 -64.5 -44.6 15.6 45.0 13.2 23 23 A L H X S+ 0 0 52 -4,-3.0 4,-2.9 1,-0.2 5,-0.2 0.913 110.4 52.9 -60.4 -43.8 18.2 43.7 10.7 24 24 A S H X S+ 0 0 78 -4,-2.5 4,-1.5 -5,-0.2 -2,-0.2 0.928 111.3 44.4 -59.1 -46.9 20.6 42.9 13.6 25 25 A S H X S+ 0 0 84 -4,-2.2 4,-1.4 2,-0.2 -2,-0.2 0.957 117.6 43.3 -65.5 -48.7 18.1 40.8 15.5 26 26 A N H X S+ 0 0 19 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.908 114.3 49.4 -65.2 -41.7 16.7 38.9 12.5 27 27 A F H X S+ 0 0 107 -4,-2.9 4,-3.3 -5,-0.3 5,-0.3 0.761 101.4 64.1 -70.7 -23.7 20.1 38.3 11.0 28 28 A G H X S+ 0 0 36 -4,-1.5 4,-1.9 -5,-0.2 -1,-0.2 0.931 105.9 45.7 -60.4 -41.0 21.5 37.0 14.3 29 29 A A H X S+ 0 0 40 -4,-1.4 4,-1.8 -3,-0.2 -2,-0.2 0.923 116.0 45.1 -66.3 -47.1 19.0 34.2 14.1 30 30 A I H X S+ 0 0 18 -4,-1.8 4,-2.5 2,-0.2 5,-0.2 0.930 112.8 49.0 -63.9 -48.7 19.9 33.5 10.4 31 31 A S H X S+ 0 0 52 -4,-3.3 4,-2.3 1,-0.2 -1,-0.2 0.864 108.4 55.0 -64.0 -32.4 23.6 33.7 10.8 32 32 A S H X S+ 0 0 67 -4,-1.9 4,-1.7 -5,-0.3 -1,-0.2 0.950 111.1 43.5 -65.4 -46.6 23.5 31.3 13.8 33 33 A V H X S+ 0 0 20 -4,-1.8 4,-2.4 1,-0.2 -2,-0.2 0.895 113.4 51.4 -66.1 -39.8 21.7 28.6 11.9 34 34 A L H X S+ 0 0 89 -4,-2.5 4,-2.8 1,-0.2 -1,-0.2 0.890 107.1 54.1 -65.3 -36.8 23.9 29.1 8.8 35 35 A N H X S+ 0 0 113 -4,-2.3 4,-0.9 -5,-0.2 -1,-0.2 0.896 109.9 48.4 -59.1 -38.7 27.0 28.7 11.1 36 36 A D H <>S+ 0 0 47 -4,-1.7 5,-2.6 2,-0.2 6,-0.4 0.923 111.0 48.2 -68.9 -45.6 25.6 25.4 12.3 37 37 A I H ><5S+ 0 0 82 -4,-2.4 3,-1.6 1,-0.2 5,-0.3 0.929 114.1 46.6 -62.5 -46.6 24.8 24.1 8.9 38 38 A S H 3<5S+ 0 0 111 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.653 106.7 59.7 -67.8 -16.6 28.4 25.1 7.7 39 39 A G T 3<5S- 0 0 52 -4,-0.9 -1,-0.3 -3,-0.3 -2,-0.2 0.394 116.9-117.1 -86.6 0.8 29.7 23.5 10.8 40 40 A G T < 5S+ 0 0 72 -3,-1.6 -3,-0.2 -4,-0.1 -2,-0.1 0.605 86.0 116.3 70.3 18.6 28.2 20.2 9.7 41 41 A R S > + 0 0 117 -2,-0.9 3,-2.3 2,-0.1 4,-0.5 0.347 31.0 139.8 -90.9 10.7 15.4 26.3 11.1 46 46 A S T 34 S+ 0 0 91 1,-0.3 -2,-0.1 2,-0.1 0, 0.0 -0.296 79.6 2.8 -50.4 127.0 12.5 27.2 13.5 47 47 A G T 3> S+ 0 0 56 1,-0.1 4,-1.7 3,-0.0 -1,-0.3 0.347 98.4 114.5 80.5 -7.0 11.5 30.8 13.0 48 48 A I H <> + 0 0 23 -3,-2.3 4,-2.4 1,-0.2 5,-0.2 0.890 68.1 57.4 -72.4 -38.1 13.8 31.3 10.1 49 49 A N H X S+ 0 0 143 -4,-0.5 4,-2.3 1,-0.2 -1,-0.2 0.919 109.1 48.2 -53.2 -45.8 11.2 31.8 7.4 50 50 A A H > S+ 0 0 56 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.885 109.7 51.3 -66.5 -37.1 9.8 34.7 9.4 51 51 A S H X S+ 0 0 15 -4,-1.7 4,-2.4 2,-0.2 -1,-0.2 0.882 108.8 51.7 -64.4 -37.4 13.2 36.2 9.9 52 52 A V H X S+ 0 0 59 -4,-2.4 4,-2.5 2,-0.2 -2,-0.2 0.934 108.9 50.2 -65.8 -45.1 13.8 36.1 6.2 53 53 A V H X S+ 0 0 77 -4,-2.3 4,-2.1 1,-0.2 -2,-0.2 0.934 111.2 50.0 -57.5 -42.6 10.5 37.8 5.5 54 54 A N H X S+ 0 0 60 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.904 110.1 48.8 -65.2 -43.6 11.4 40.5 8.0 55 55 A I H X S+ 0 0 19 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.898 108.4 54.6 -64.2 -39.2 14.9 41.1 6.4 56 56 A Q H X S+ 0 0 110 -4,-2.5 4,-1.8 1,-0.2 -1,-0.2 0.916 110.9 45.6 -59.7 -42.9 13.3 41.3 2.9 57 57 A K H X S+ 0 0 109 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.922 111.8 52.2 -66.7 -39.4 11.0 44.1 4.2 58 58 A E H X S+ 0 0 8 -4,-2.5 4,-2.6 2,-0.2 -2,-0.2 0.866 106.6 52.6 -65.4 -39.7 13.9 45.9 6.0 59 59 A I H X S+ 0 0 84 -4,-2.6 4,-2.1 2,-0.2 -1,-0.2 0.931 111.3 46.9 -59.2 -47.6 16.0 45.9 2.8 60 60 A D H X S+ 0 0 107 -4,-1.8 4,-1.8 1,-0.2 -2,-0.2 0.893 112.3 50.2 -62.3 -38.3 13.1 47.5 0.9 61 61 A R H X S+ 0 0 137 -4,-2.4 4,-2.0 2,-0.2 -2,-0.2 0.877 107.9 53.2 -68.3 -36.1 12.6 50.0 3.7 62 62 A L H X S+ 0 0 43 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.882 106.3 53.6 -62.1 -39.9 16.4 50.8 3.7 63 63 A N H X S+ 0 0 104 -4,-2.1 4,-2.3 1,-0.2 -2,-0.2 0.902 107.2 51.7 -61.7 -36.4 16.0 51.5 -0.1 64 64 A E H X S+ 0 0 88 -4,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.903 108.6 50.3 -68.2 -38.6 13.2 53.9 0.7 65 65 A V H X S+ 0 0 9 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.939 110.1 49.8 -62.6 -46.0 15.4 55.7 3.3 66 66 A A H X S+ 0 0 58 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.902 111.7 49.2 -59.5 -41.3 18.2 56.1 0.8 67 67 A K H X S+ 0 0 107 -4,-2.3 4,-2.7 1,-0.2 -1,-0.2 0.908 110.5 50.4 -65.2 -42.0 15.7 57.4 -1.8 68 68 A N H X S+ 0 0 67 -4,-2.5 4,-1.6 2,-0.2 -2,-0.2 0.915 110.8 48.6 -63.7 -44.2 14.3 60.0 0.6 69 69 A L H X S+ 0 0 61 -4,-2.4 4,-0.6 2,-0.2 -1,-0.2 0.931 114.0 45.8 -61.9 -46.7 17.8 61.3 1.6 70 70 A N H >X S+ 0 0 97 -4,-2.4 3,-1.3 1,-0.2 4,-1.0 0.926 110.7 52.7 -63.6 -43.4 18.8 61.6 -2.0 71 71 A E H 3X S+ 0 0 91 -4,-2.7 4,-2.2 1,-0.3 3,-0.3 0.826 97.3 68.4 -61.7 -32.1 15.6 63.4 -3.0 72 72 A S H 3< S+ 0 0 32 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.762 101.3 46.4 -62.7 -26.6 16.0 65.9 -0.2 73 73 A L H << S+ 0 0 132 -3,-1.3 -1,-0.3 -4,-0.6 -2,-0.2 0.764 121.8 35.7 -83.2 -25.9 19.0 67.4 -2.0 74 74 A I H < 0 0 125 -4,-1.0 -2,-0.2 -3,-0.3 -3,-0.1 0.948 360.0 360.0 -92.7 -60.5 17.3 67.5 -5.4 75 75 A D < 0 0 184 -4,-2.2 -4,-0.0 0, 0.0 0, 0.0 0.032 360.0 360.0-153.8 360.0 13.6 68.3 -4.9