==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 03-JUN-05 1ZW7 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR D.N.ERMOLENKO,B.DANGI,A.M.GRONENBORN,G.I.MAKHATADZE . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7962.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 13.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 166 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.1 -6.8 6.9 -15.3 2 2 A Q - 0 0 151 14,-0.1 62,-0.5 2,-0.0 2,-0.3 -0.905 360.0-174.3-159.3 126.2 -7.8 3.7 -13.6 3 3 A I E -A 15 0A 28 12,-1.0 12,-0.7 -2,-0.3 2,-0.4 -0.807 19.1-130.2-120.3 162.0 -6.0 1.3 -11.2 4 4 A F E -Ab 14 66A 126 61,-0.5 63,-1.8 -2,-0.3 2,-0.4 -0.939 20.1-174.7-114.8 133.3 -6.8 -2.0 -9.6 5 5 A V E -Ab 13 67A 9 8,-1.0 8,-2.3 -2,-0.4 2,-0.5 -0.984 14.4-146.3-131.8 122.5 -6.4 -2.7 -5.9 6 6 A K E - b 0 68A 115 61,-1.5 63,-1.2 -2,-0.4 6,-0.2 -0.753 17.4-159.1 -90.5 128.0 -6.9 -6.1 -4.3 7 7 A T - 0 0 51 -2,-0.5 3,-0.2 4,-0.4 5,-0.1 -0.226 36.2 -94.4 -93.1-174.8 -8.3 -6.1 -0.8 8 8 A L S S+ 0 0 121 1,-0.2 -1,-0.1 2,-0.1 62,-0.0 0.674 125.8 52.2 -76.0 -17.3 -8.2 -8.7 2.0 9 9 A T S S- 0 0 134 2,-0.2 -1,-0.2 0, 0.0 3,-0.1 0.659 117.1-112.3 -90.7 -18.4 -11.5 -10.1 0.8 10 10 A G S S+ 0 0 40 1,-0.3 2,-0.8 -3,-0.2 -2,-0.1 0.335 74.1 133.5 103.5 -6.0 -10.4 -10.5 -2.8 11 11 A A - 0 0 58 -5,-0.1 -4,-0.4 1,-0.0 -1,-0.3 -0.708 50.9-140.5 -84.1 108.1 -12.7 -7.7 -4.1 12 12 A T - 0 0 78 -2,-0.8 2,-0.4 -6,-0.2 -6,-0.2 -0.449 17.0-153.4 -68.5 134.8 -10.7 -5.4 -6.4 13 13 A I E -A 5 0A 70 -8,-2.3 -8,-1.0 -2,-0.2 2,-0.5 -0.907 7.7-135.5-115.4 141.1 -11.6 -1.8 -6.0 14 14 A T E +A 4 0A 94 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.1 -0.815 33.6 165.2 -96.2 126.2 -11.4 1.0 -8.6 15 15 A L E -A 3 0A 92 -12,-0.7 -12,-1.0 -2,-0.5 2,-0.4 -0.930 32.5-124.5-138.4 162.2 -9.9 4.3 -7.4 16 16 A E - 0 0 130 -2,-0.3 2,-0.1 -14,-0.1 -14,-0.1 -0.908 24.9-140.9-110.5 131.9 -8.5 7.5 -8.8 17 17 A V - 0 0 53 -2,-0.4 2,-0.3 39,-0.0 3,-0.1 -0.446 15.6-166.9 -88.4 165.3 -5.1 8.8 -7.8 18 18 A E > - 0 0 111 -2,-0.1 3,-1.4 3,-0.1 38,-0.2 -0.995 32.2-126.6-150.7 150.6 -4.0 12.3 -7.1 19 19 A S T 3 S+ 0 0 78 -2,-0.3 38,-0.7 1,-0.3 37,-0.5 0.881 116.2 48.9 -63.2 -38.8 -0.8 14.3 -6.7 20 20 A S T 3 S+ 0 0 85 36,-0.1 2,-0.8 35,-0.1 -1,-0.3 0.306 84.8 115.9 -84.6 9.5 -2.1 15.6 -3.4 21 21 A D < + 0 0 37 -3,-1.4 35,-0.7 4,-0.1 2,-0.2 -0.714 43.7 176.2 -84.9 109.4 -3.0 12.1 -2.3 22 22 A T B > -C 55 0B 38 -2,-0.8 4,-2.2 33,-0.2 5,-0.2 -0.657 47.3-103.2-109.1 166.8 -0.9 11.1 0.7 23 23 A I H > S+ 0 0 26 31,-1.0 4,-0.6 29,-0.4 30,-0.1 0.756 124.5 47.9 -59.0 -23.5 -0.9 8.1 3.0 24 24 A D H > S+ 0 0 111 28,-0.2 4,-2.3 2,-0.2 3,-0.5 0.898 106.1 54.1 -83.3 -45.2 -2.7 10.2 5.5 25 25 A N H > S+ 0 0 90 1,-0.3 4,-1.7 2,-0.2 -2,-0.2 0.900 103.7 57.0 -56.3 -42.6 -5.4 11.7 3.2 26 26 A V H < S+ 0 0 60 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.878 109.2 47.4 -56.4 -37.7 -6.4 8.2 2.1 27 27 A K H >< S+ 0 0 20 -4,-0.6 3,-2.2 -3,-0.5 -2,-0.2 0.910 105.6 56.2 -70.1 -44.8 -7.0 7.4 5.8 28 28 A S H >< S+ 0 0 83 -4,-2.3 3,-0.6 1,-0.3 -1,-0.2 0.819 98.3 64.9 -57.1 -31.9 -9.0 10.6 6.4 29 29 A K T 3< S+ 0 0 172 -4,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.429 78.7 84.3 -73.3 2.2 -11.3 9.5 3.6 30 30 A I T < + 0 0 45 -3,-2.2 -1,-0.3 1,-0.2 -2,-0.1 0.088 55.7 108.4 -91.6 24.3 -12.4 6.5 5.7 31 31 A Q < + 0 0 184 -3,-0.6 -1,-0.2 1,-0.1 -2,-0.1 -0.043 69.4 61.7 -90.4 32.9 -15.0 8.7 7.4 32 32 A A S S+ 0 0 87 1,-0.2 -1,-0.1 -3,-0.2 -2,-0.1 0.687 106.0 23.6-117.4 -70.2 -17.9 7.0 5.7 33 33 A A S S- 0 0 77 3,-0.0 3,-0.3 2,-0.0 -1,-0.2 -0.871 74.7-160.9-108.2 103.6 -18.2 3.3 6.4 34 34 A P + 0 0 121 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 -0.060 48.2 103.4 -71.1 177.9 -16.6 2.3 9.8 35 35 A G S S+ 0 0 73 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.068 75.0 55.2 138.2 -36.7 -15.5 -1.2 10.8 36 36 A I S S- 0 0 97 -3,-0.3 -1,-0.1 5,-0.0 5,-0.1 -0.976 87.5-103.1-130.4 143.0 -11.7 -1.2 10.4 37 37 A P > - 0 0 64 0, 0.0 3,-2.0 0, 0.0 4,-0.1 -0.464 22.2-146.6 -66.1 122.6 -9.0 1.0 11.8 38 38 A P G > S+ 0 0 55 0, 0.0 3,-1.2 0, 0.0 -10,-0.1 0.766 98.6 62.6 -60.5 -25.8 -7.7 3.5 9.2 39 39 A D G 3 S+ 0 0 128 1,-0.3 -12,-0.0 -12,-0.1 -15,-0.0 0.518 93.3 65.2 -77.7 -4.8 -4.3 3.3 10.7 40 40 A Q G < S+ 0 0 63 -3,-2.0 2,-0.5 31,-0.1 -1,-0.3 0.312 82.8 94.2 -99.0 7.6 -4.2 -0.4 9.8 41 41 A Q < + 0 0 64 -3,-1.2 2,-0.3 30,-0.1 30,-0.1 -0.881 47.6 149.1-106.2 129.7 -4.3 0.3 6.1 42 42 A E E -D 70 0C 71 28,-0.7 28,-0.9 -2,-0.5 2,-0.4 -0.990 44.1-112.5-152.7 156.8 -1.0 0.5 4.1 43 43 A L E +D 69 0C 44 -2,-0.3 7,-1.2 26,-0.2 2,-0.4 -0.755 36.5 179.9 -93.2 137.4 0.4 -0.2 0.7 44 44 A I B -E 49 0D 24 24,-2.6 5,-0.2 -2,-0.4 24,-0.1 -0.983 31.0-153.4-144.4 130.9 2.9 -3.1 0.4 45 45 A F - 0 0 116 3,-3.7 2,-3.7 -2,-0.4 3,-0.2 -0.083 48.3-115.5 -89.3 34.9 4.8 -4.6 -2.5 46 46 A A S S+ 0 0 97 1,-0.3 -1,-0.1 2,-0.1 3,-0.1 -0.311 113.1 22.4 66.7 -66.7 5.0 -8.0 -0.8 47 47 A G S S+ 0 0 79 -2,-3.7 2,-0.5 1,-0.2 -1,-0.3 0.465 122.1 65.7-106.7 -4.8 8.8 -7.6 -0.7 48 48 A K S S- 0 0 129 -3,-0.2 -3,-3.7 0, 0.0 2,-0.4 -0.939 70.5-156.3-123.8 110.4 8.9 -3.8 -0.9 49 49 A Q B -E 44 0D 162 -2,-0.5 -5,-0.2 -5,-0.2 2,-0.1 -0.696 12.9-136.9 -87.9 132.4 7.3 -1.8 2.0 50 50 A L - 0 0 32 -7,-1.2 2,-0.5 -2,-0.4 3,-0.0 -0.406 18.1-113.5 -83.3 162.4 6.1 1.7 1.3 51 51 A E > - 0 0 128 1,-0.1 3,-1.9 -2,-0.1 -28,-0.2 -0.844 7.7-146.2-101.0 130.3 6.7 4.7 3.6 52 52 A D T 3 S+ 0 0 53 -2,-0.5 -29,-0.4 1,-0.3 -28,-0.2 0.821 101.8 58.3 -60.9 -31.4 3.7 6.3 5.3 53 53 A G T 3 S+ 0 0 77 -30,-0.1 -1,-0.3 -31,-0.1 2,-0.3 0.281 87.3 107.9 -82.6 11.6 5.5 9.7 5.0 54 54 A R < - 0 0 86 -3,-1.9 -31,-1.0 1,-0.0 2,-0.2 -0.653 60.4-139.0 -93.7 148.9 5.6 9.3 1.2 55 55 A T B > -C 22 0B 53 -2,-0.3 4,-0.7 -33,-0.2 -33,-0.2 -0.536 24.5-109.1 -99.3 168.0 3.5 11.3 -1.3 56 56 A L T >4 S+ 0 0 30 -35,-0.7 3,-2.2 -37,-0.5 4,-0.2 0.964 119.6 49.6 -59.7 -54.8 1.8 10.2 -4.5 57 57 A S G >4 S+ 0 0 74 -38,-0.7 3,-0.6 1,-0.3 -1,-0.2 0.797 103.8 63.1 -54.9 -29.2 4.1 12.0 -6.8 58 58 A D G 34 S+ 0 0 90 1,-0.2 -1,-0.3 -39,-0.2 -2,-0.2 0.750 123.7 17.2 -67.8 -24.9 7.0 10.4 -4.8 59 59 A Y G << S+ 0 0 105 -3,-2.2 2,-1.1 -4,-0.7 -1,-0.2 -0.030 89.8 134.8-137.1 29.8 5.7 6.9 -5.9 60 60 A N < + 0 0 84 -3,-0.6 3,-0.1 -4,-0.2 2,-0.1 -0.723 31.1 176.5 -88.3 99.1 3.5 7.9 -8.9 61 61 A I - 0 0 110 -2,-1.1 2,-0.2 1,-0.1 3,-0.1 -0.182 38.1 -67.3 -91.3-175.7 4.3 5.5 -11.7 62 62 A Q - 0 0 174 1,-0.1 -1,-0.1 2,-0.1 0, 0.0 -0.568 64.3 -85.6 -80.4 139.5 2.8 5.1 -15.2 63 63 A K S S+ 0 0 182 -2,-0.2 -1,-0.1 -3,-0.1 -60,-0.1 0.252 103.8 56.0 -33.7 161.6 -0.8 3.9 -15.6 64 64 A E S S+ 0 0 182 -62,-0.5 2,-0.3 1,-0.2 -2,-0.1 0.993 71.0 140.6 66.7 77.9 -1.5 0.1 -15.6 65 65 A S - 0 0 45 -4,-0.1 -61,-0.5 -61,-0.0 -1,-0.2 -0.911 49.1-127.0-154.2 120.5 0.1 -1.0 -12.4 66 66 A T E -b 4 0A 126 -2,-0.3 2,-0.4 -63,-0.1 -61,-0.1 -0.459 24.7-156.4 -69.3 135.5 -1.2 -3.6 -9.9 67 67 A L E -b 5 0A 46 -63,-1.8 -61,-1.5 -2,-0.2 2,-0.5 -0.930 2.3-156.7-116.7 138.0 -1.5 -2.3 -6.3 68 68 A H E -b 6 0A 100 -2,-0.4 -24,-2.6 -63,-0.2 2,-0.5 -0.956 8.6-176.0-120.1 123.5 -1.4 -4.5 -3.2 69 69 A L E -D 43 0C 37 -63,-1.2 2,-0.3 -2,-0.5 -26,-0.2 -0.963 6.8-174.5-120.1 120.7 -2.9 -3.6 0.1 70 70 A V E -D 42 0C 42 -28,-0.9 -28,-0.7 -2,-0.5 2,-0.5 -0.825 18.0-149.7-114.0 152.7 -2.6 -5.8 3.2 71 71 A L + 0 0 46 -2,-0.3 2,-0.2 -30,-0.1 -30,-0.1 -0.752 22.8 179.4-123.4 84.2 -4.0 -5.5 6.7 72 72 A R - 0 0 204 -2,-0.5 2,-0.3 -32,-0.2 -2,-0.0 -0.521 28.0-117.3 -83.6 151.5 -1.7 -7.1 9.2 73 73 A L + 0 0 153 -2,-0.2 -1,-0.1 1,-0.1 3,-0.0 -0.707 44.7 150.1 -91.0 138.1 -2.5 -7.2 12.9 74 74 A R + 0 0 241 -2,-0.3 2,-1.3 3,-0.0 3,-0.1 0.183 27.9 123.1-149.8 15.3 -0.2 -5.4 15.4 75 75 A G S S- 0 0 79 1,-0.2 -2,-0.0 0, 0.0 2,-0.0 -0.116 89.0 -65.9 -77.5 41.7 -2.5 -4.3 18.3 76 76 A G S S- 0 0 61 -2,-1.3 -1,-0.2 2,-0.0 2,-0.1 0.104 70.1 -60.4 91.8 152.8 -0.4 -6.2 20.8 77 77 A H - 0 0 192 -3,-0.1 2,-0.3 1,-0.1 -3,-0.0 -0.347 50.9-123.4 -70.0 148.9 0.4 -9.9 21.4 78 78 A H - 0 0 152 -2,-0.1 2,-0.4 1,-0.0 -1,-0.1 -0.719 20.2-119.2 -95.6 143.4 -2.4 -12.3 22.2 79 79 A H - 0 0 183 -2,-0.3 2,-0.9 1,-0.1 -1,-0.0 -0.685 22.9-127.7 -84.2 127.0 -2.5 -14.5 25.3 80 80 A H - 0 0 162 -2,-0.4 2,-0.6 1,-0.0 -1,-0.1 -0.632 21.9-147.4 -77.2 105.7 -2.5 -18.2 24.6 81 81 A H 0 0 174 -2,-0.9 -1,-0.0 1,-0.2 -2,-0.0 -0.643 360.0 360.0 -78.8 114.7 -5.4 -19.6 26.6 82 82 A H 0 0 252 -2,-0.6 -1,-0.2 0, 0.0 -2,-0.0 0.947 360.0 360.0 -87.2 360.0 -4.6 -23.1 27.8