==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/INHIBITOR 20-FEB-09 2ZZO . COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.WATABE,H.NAKANO,T.NAKATSU,H.KATO,N.FUJII . 70 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5971.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 88.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 87.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 35 N S > 0 0 140 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -39.1 20.4 -7.0 -16.8 2 36 N G H > + 0 0 18 2,-0.2 4,-1.5 1,-0.2 64,-0.1 0.786 360.0 52.5 -74.1 -24.7 18.2 -8.8 -14.2 3 37 N I H > S+ 0 0 104 2,-0.2 4,-2.5 3,-0.1 -1,-0.2 0.933 108.7 46.7 -72.4 -50.3 21.1 -11.0 -13.2 4 38 N V H > S+ 0 0 107 1,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.864 114.1 52.6 -58.6 -37.2 23.5 -8.1 -12.5 5 39 N Q H X S+ 0 0 75 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.870 106.8 49.6 -66.3 -41.8 20.6 -6.6 -10.6 6 40 N Q H X S+ 0 0 14 -4,-1.5 4,-2.4 2,-0.2 5,-0.2 0.900 107.7 55.1 -62.3 -39.6 20.0 -9.7 -8.5 7 41 N Q H X S+ 0 0 119 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.886 106.2 51.4 -65.4 -35.8 23.7 -9.9 -7.6 8 42 N N H X S+ 0 0 72 -4,-1.6 4,-2.8 2,-0.2 -1,-0.2 0.908 110.0 50.1 -55.9 -51.2 23.4 -6.3 -6.3 9 43 N N H X S+ 0 0 0 -4,-1.8 4,-1.3 2,-0.2 -2,-0.2 0.838 113.7 44.4 -59.6 -41.7 20.4 -7.3 -4.3 10 44 N L H X S+ 0 0 86 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.890 111.8 52.1 -73.7 -35.6 22.3 -10.3 -2.8 11 45 N L H X S+ 0 0 88 -4,-2.4 4,-2.4 1,-0.2 5,-0.2 0.957 110.7 49.6 -63.9 -46.6 25.5 -8.3 -2.1 12 46 N R H X S+ 0 0 84 -4,-2.8 4,-1.6 2,-0.2 -1,-0.2 0.860 110.6 49.2 -60.7 -34.8 23.4 -5.8 -0.4 13 47 N A H X S+ 0 0 12 -4,-1.3 4,-2.3 1,-0.2 5,-0.2 0.932 109.7 51.2 -72.8 -41.7 21.7 -8.5 1.7 14 48 N I H X S+ 0 0 107 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.877 110.4 49.9 -54.9 -38.5 25.0 -10.0 2.6 15 49 N E H X S+ 0 0 97 -4,-2.4 4,-1.5 1,-0.2 -1,-0.2 0.897 110.8 48.1 -71.1 -36.2 26.3 -6.6 3.7 16 50 N A H X S+ 0 0 3 -4,-1.6 4,-1.7 2,-0.2 -1,-0.2 0.855 110.7 51.9 -76.7 -28.6 23.3 -5.9 5.9 17 51 N Q H X S+ 0 0 92 -4,-2.3 4,-2.9 1,-0.2 -2,-0.2 0.912 104.7 57.4 -74.2 -34.4 23.6 -9.4 7.4 18 52 N Q H X S+ 0 0 102 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.899 104.4 51.5 -56.5 -42.4 27.2 -8.7 8.2 19 53 N H H X S+ 0 0 66 -4,-1.5 4,-2.0 2,-0.2 -2,-0.2 0.930 109.9 49.5 -58.8 -44.6 26.1 -5.7 10.2 20 54 N L H X S+ 0 0 40 -4,-1.7 4,-2.3 1,-0.2 -2,-0.2 0.901 108.9 52.7 -62.2 -44.0 23.7 -7.9 12.1 21 55 N L H X S+ 0 0 91 -4,-2.9 4,-2.1 1,-0.2 -1,-0.2 0.908 107.3 50.7 -60.3 -38.8 26.4 -10.3 12.8 22 56 N Q H X S+ 0 0 99 -4,-2.3 4,-2.1 1,-0.2 -1,-0.2 0.882 109.5 53.2 -69.2 -32.5 28.7 -7.7 14.2 23 57 N L H X S+ 0 0 18 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.912 109.9 45.7 -62.8 -43.7 25.7 -6.6 16.4 24 58 N T H X S+ 0 0 60 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.903 111.8 52.5 -67.1 -32.8 25.2 -10.1 17.8 25 59 N V H X S+ 0 0 69 -4,-2.1 4,-2.0 1,-0.2 5,-0.2 0.974 111.3 47.3 -63.4 -54.4 29.0 -10.5 18.4 26 60 N W H X S+ 0 0 99 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.901 110.6 51.1 -42.7 -56.6 29.0 -7.3 20.3 27 61 N G H X S+ 0 0 3 -4,-2.2 4,-1.9 1,-0.2 -1,-0.2 0.869 109.2 52.5 -56.1 -37.5 25.9 -8.3 22.3 28 62 N I H X S+ 0 0 112 -4,-2.0 4,-3.1 2,-0.2 -1,-0.2 0.910 107.9 48.9 -69.7 -41.0 27.6 -11.6 23.2 29 63 N K H X S+ 0 0 125 -4,-2.0 4,-2.7 2,-0.2 -1,-0.2 0.839 110.2 52.4 -67.0 -33.6 30.9 -9.9 24.5 30 64 N Q H X S+ 0 0 80 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.910 112.4 43.7 -65.1 -51.1 28.8 -7.6 26.7 31 65 N L H X S+ 0 0 94 -4,-1.9 4,-2.8 2,-0.2 -2,-0.2 0.954 112.9 54.5 -58.6 -45.9 26.9 -10.4 28.2 32 66 N Q H X S+ 0 0 118 -4,-3.1 4,-2.4 1,-0.2 -2,-0.2 0.917 110.1 45.6 -52.7 -49.3 30.2 -12.3 28.5 33 67 N A H < S+ 0 0 57 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.929 112.4 50.1 -61.6 -45.0 31.8 -9.4 30.4 34 68 N R H < S+ 0 0 206 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.941 111.9 49.8 -60.5 -36.6 28.8 -9.0 32.7 35 69 N I H < 0 0 137 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.920 360.0 360.0 -67.7 -44.7 28.9 -12.7 33.4 36 70 N L < 0 0 171 -4,-2.4 -3,-0.0 -5,-0.2 -4,-0.0 -0.074 360.0 360.0 -39.3 360.0 32.7 -12.8 34.2 37 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 38 117 C W > 0 0 130 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -24.9 21.5 -2.1 24.8 39 118 C M H > + 0 0 161 2,-0.2 4,-1.6 1,-0.2 5,-0.1 0.899 360.0 43.5 -78.4 -40.1 18.9 0.5 23.7 40 119 C E H > S+ 0 0 131 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.862 111.9 55.9 -64.6 -39.5 21.1 1.6 20.8 41 120 C W H > S+ 0 0 57 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.933 106.9 49.4 -54.2 -50.3 21.8 -2.1 20.1 42 121 C D H X S+ 0 0 79 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.897 111.4 49.8 -56.7 -43.3 18.1 -2.8 19.8 43 122 C R H X S+ 0 0 167 -4,-1.6 4,-2.2 1,-0.2 -1,-0.2 0.880 109.5 47.0 -69.8 -43.8 17.6 0.0 17.5 44 123 C E H X S+ 0 0 89 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.783 110.6 56.5 -66.1 -34.2 20.4 -0.8 15.0 45 124 C I H X S+ 0 0 33 -4,-1.9 4,-2.6 -5,-0.2 -2,-0.2 0.920 109.8 45.1 -57.3 -47.8 19.1 -4.5 15.1 46 125 C N H X S+ 0 0 105 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.902 112.1 50.9 -70.7 -39.1 15.7 -3.2 14.0 47 126 C N H X S+ 0 0 110 -4,-2.2 4,-2.1 1,-0.2 -1,-0.2 0.957 115.1 41.1 -63.0 -49.2 17.0 -0.9 11.4 48 127 C Y H X S+ 0 0 61 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.855 111.1 57.7 -67.5 -36.1 19.2 -3.6 9.7 49 128 C T H X S+ 0 0 64 -4,-2.6 4,-2.1 2,-0.2 -1,-0.2 0.862 109.5 45.2 -60.2 -39.8 16.5 -6.3 10.1 50 129 C S H X S+ 0 0 79 -4,-2.0 4,-2.6 2,-0.2 5,-0.2 0.914 111.3 51.7 -68.4 -47.1 14.1 -4.1 8.1 51 130 C L H X S+ 0 0 83 -4,-2.1 4,-2.8 -5,-0.2 5,-0.2 0.983 112.8 47.3 -48.3 -54.7 16.7 -3.3 5.5 52 131 C I H X S+ 0 0 16 -4,-2.5 4,-2.1 1,-0.2 -2,-0.2 0.860 111.2 48.7 -54.9 -51.5 17.4 -7.1 5.1 53 132 C H H X S+ 0 0 120 -4,-2.1 4,-2.5 2,-0.2 -1,-0.2 0.906 111.6 51.2 -55.4 -51.4 13.7 -8.0 4.9 54 133 C S H X S+ 0 0 52 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.923 111.9 48.1 -41.2 -52.7 13.3 -5.2 2.2 55 134 C L H X S+ 0 0 3 -4,-2.8 4,-1.3 -5,-0.2 -2,-0.2 0.829 109.7 50.4 -69.9 -35.3 16.2 -6.7 0.3 56 135 C I H X S+ 0 0 68 -4,-2.1 4,-2.2 -5,-0.2 3,-0.2 0.934 109.5 50.0 -71.2 -47.6 15.0 -10.3 0.4 57 136 C E H X S+ 0 0 86 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.927 111.5 49.9 -50.0 -53.1 11.5 -9.4 -0.9 58 137 C E H X S+ 0 0 64 -4,-2.0 4,-1.8 -5,-0.2 -1,-0.2 0.815 111.3 48.7 -54.6 -37.4 13.1 -7.5 -3.7 59 138 C A H X S+ 0 0 10 -4,-1.3 4,-1.4 -3,-0.2 -1,-0.2 0.737 107.4 54.6 -74.8 -31.2 15.4 -10.4 -4.5 60 139 C Q H X S+ 0 0 133 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.924 111.3 46.2 -65.9 -41.4 12.5 -12.9 -4.5 61 140 C N H X S+ 0 0 103 -4,-2.0 4,-2.0 1,-0.2 -2,-0.2 0.902 114.6 46.1 -64.4 -47.6 10.7 -10.7 -7.1 62 141 C Q H X S+ 0 0 24 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.825 108.2 58.1 -61.5 -32.8 13.8 -10.3 -9.2 63 142 C Q H X S+ 0 0 79 -4,-1.4 4,-1.8 1,-0.2 -2,-0.2 0.937 106.9 47.9 -68.5 -38.1 14.4 -14.1 -8.9 64 143 C E H X S+ 0 0 101 -4,-1.7 4,-2.4 1,-0.2 -2,-0.2 0.900 111.7 48.6 -63.7 -48.5 11.0 -14.7 -10.4 65 144 C K H X S+ 0 0 105 -4,-2.0 4,-2.4 1,-0.2 -1,-0.2 0.863 110.7 51.4 -57.2 -42.5 11.5 -12.3 -13.3 66 145 C N H X S+ 0 0 17 -4,-2.2 4,-1.0 2,-0.2 -1,-0.2 0.864 108.8 50.6 -70.5 -39.6 14.9 -13.8 -14.1 67 146 C E H < S+ 0 0 101 -4,-1.8 3,-0.4 -5,-0.2 4,-0.4 0.938 113.5 46.0 -61.6 -45.7 13.4 -17.3 -14.2 68 147 C Q H >< S+ 0 0 113 -4,-2.4 3,-1.7 1,-0.2 -2,-0.2 0.911 108.2 55.5 -51.4 -49.6 10.7 -16.1 -16.6 69 148 C E H 3< S+ 0 0 143 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.718 90.8 71.6 -77.3 -15.0 13.0 -14.2 -18.8 70 149 C L T 3< 0 0 133 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.2 0.750 360.0 360.0 -56.9 -26.4 15.2 -17.3 -19.5 71 150 C L < 0 0 186 -3,-1.7 -1,-0.2 -4,-0.4 -2,-0.2 0.667 360.0 360.0 -86.4 360.0 12.3 -18.5 -21.5