Read libraries from system resource. Wattos started at: January 19, 2007 10:21:12 AM CST Program arguments [1] :[-at] SubMenus:----------------------------------------------------- File Edit View Options Prop - Attr Calc Help - Commands:----------------------------------------------------- - Read libraries from system resource. SubMenus:----------------------------------------------------- File Edit View Options Prop - Attr Calc Help - Commands:----------------------------------------------------- - SubMenus:----------------------------------------------------- File Edit View Options Prop - Attr Calc Help - Commands:----------------------------------------------------- - Enter property name: Enter property value (watch value type) for interactiveSession: Enter property name: Enter property value (watch value type) for verbosity: Enter property name: Enter property value (watch value type) for writeSessionOnExit: Enter property name: Enter property value (watch value type) for stopOnError: Enter url to (gzipped) PDB formatted coordinate file: Doing ReadEntryPDB with arguments: [file:/dumpzone/pdb/nozip/data/structures/all/pdb/pdb2b6g.ent, PDB] Read total number of atoms from PDB formatted coordinate list: 1969 Tolerance (0.1 Angstrom suggested) Doing CalcBond with arguments: [0.1] Done. Checked number of potential pairs: 2301 Found number of new bond candidates: 2028 Hydrogen bond distance between proton and acceptor cutoff (2.7 Angstroms suggested) Hydrogen bond distance between donor and acceptor cutoff (3.35 Angstroms suggested) Hydrogen bond angle (D-H-A) cutoff (90 degrees suggested) Doing CalcHydrogenBond with arguments: [2.7, 3.35, 90.0] Found number of new hydrogen bond candidates: 170 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 5(LEU) 2 O 1(ASN) 2 1 1 154.911 5 N 5(LEU) 2 N 4(SER) 2 1 1 99.917 5 N 5(LEU) 2 OG 4(SER) 2 1 1 93.685 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 13(ASN) 2 O 9(LYS) 2 1 1 155.180 5 N 13(ASN) 2 O 10(LEU) 2 1 1 114.447 5 N 13(ASN) 2 N 12(LYS) 2 1 1 97.682 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 17(TRP) 2 O 13(ASN) 2 1 1 161.207 5 N 17(TRP) 2 O 14(ILE) 2 1 1 103.792 5 N 17(TRP) 2 N 16(MET) 2 1 1 98.353 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 18(LEU) 2 O 14(ILE) 2 1 1 159.110 5 N 18(LEU) 2 O 15(PRO) 2 1 1 110.682 5 N 18(LEU) 2 N 17(TRP) 2 1 1 96.280 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 19(LYS) 2 O 15(PRO) 2 1 1 160.327 5 N 19(LYS) 2 O 16(MET) 2 1 1 104.325 5 N 19(LYS) 2 N 18(LEU) 2 1 1 97.950 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 20(SER) 2 O 16(MET) 2 1 1 155.430 5 N 20(SER) 2 O 17(TRP) 2 1 1 115.781 5 N 20(SER) 2 N 19(LYS) 2 1 1 97.868 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 21(LEU) 2 O 17(TRP) 2 1 1 159.394 5 N 21(LEU) 2 O 18(LEU) 2 1 1 110.642 5 N 21(LEU) 2 N 20(SER) 2 1 1 97.048 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 22(ARG) 2 O 18(LEU) 2 1 1 149.576 5 N 22(ARG) 2 O 19(LYS) 2 1 1 111.285 5 N 22(ARG) 2 N 21(LEU) 2 1 1 101.584 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 57(ARG) 2 O 53(ALA) 2 1 1 158.084 5 N 57(ARG) 2 O 54(LEU) 2 1 1 106.481 5 N 57(ARG) 2 N 56(ALA) 2 1 1 97.510 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 58(ARG) 2 O 54(LEU) 2 1 1 151.005 5 N 58(ARG) 2 O 55(GLY) 2 1 1 115.151 5 N 58(ARG) 2 N 57(ARG) 2 1 1 100.122 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 61(LEU) 2 O 57(ARG) 2 1 1 144.353 5 N 61(LEU) 2 O 58(ARG) 2 1 1 106.870 5 N 61(LEU) 2 N 60(LEU) 2 1 1 97.334 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 65(GLY) 2 O 61(LEU) 2 1 1 148.232 5 N 65(GLY) 2 O 62(LYS) 2 1 1 109.847 5 N 65(GLY) 2 N 64(PHE) 2 1 1 98.469 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 66(ILE) 2 O 62(LYS) 2 1 1 164.633 5 N 66(ILE) 2 O 63(ALA) 2 1 1 108.151 5 N 66(ILE) 2 N 65(GLY) 2 1 1 95.437 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 69(ASP) 2 O 65(GLY) 2 1 1 156.075 5 N 69(ASP) 2 O 66(ILE) 2 1 1 107.961 5 N 69(ASP) 2 N 68(ILE) 2 1 1 97.899 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 72(GLU) 2 O 68(ILE) 2 1 1 159.023 5 N 72(GLU) 2 O 69(ASP) 2 1 1 110.338 5 N 72(GLU) 2 N 71(LYS) 2 1 1 97.389 5 WARNING: Got more than two hydrogen bond for this donor (N). Hydrogen bonds (3) read: WARNING: Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N 74(ASP) 2 O 70(TYR) 2 1 1 148.228 5 N 74(ASP) 2 O 71(LYS) 2 1 1 115.028 5 N 74(ASP) 2 N 73(ARG) 2 1 1 100.183 5 Found number of new hydrogen bonds: 170 Atom Res#(Nam) Mol# Atom Res#(Nam) Mol# Model# Entry# Value_1 Value_2 RefValue RefSD Type Minimum Average Maximum Under cutoff N1 1(G ) 1 N3 19(C ) 1 1 1 2.865 177.863 5 N2 1(G ) 1 O2 19(C ) 1 1 1 2.833 171.832 5 N1 2(G ) 1 O2 18(U ) 1 1 1 2.946 172.009 5 N6 3(A ) 1 O4 17(U ) 1 1 1 2.906 169.991 5 O2* 4(G ) 1 O4* 5(G ) 1 1 1 3.262 131.647 5 N1 4(G ) 1 O2 16(U ) 1 1 1 2.916 168.980 5 N1 5(G ) 1 N3 15(C ) 1 1 1 2.855 179.596 5 N2 5(G ) 1 O2 15(C ) 1 1 1 2.840 160.142 5 N4 6(C ) 1 O6 14(G ) 1 1 1 2.825 174.677 5 N3 7(U ) 1 N1 13(A ) 1 1 1 2.908 179.186 5 O2* 8(C ) 1 N7 10(G ) 1 1 1 2.377 134.407 5 N4 8(C ) 1 O4 7(U ) 1 1 1 2.712 104.451 5 N4 8(C ) 1 O6 11(G ) 1 1 1 2.812 168.397 5 O2* 9(U ) 1 N2 11(G ) 1 1 1 2.835 116.696 5 N1 10(G ) 1 OH 26(TYR) 2 1 1 3.231 121.543 5 N2 10(G ) 1 OH 26(TYR) 2 1 1 2.601 134.241 5 O2* 11(G ) 1 O3* 12(C ) 1 1 1 2.932 112.558 5 N1 11(G ) 1 N3 8(C ) 1 1 1 2.868 179.157 5 N2 11(G ) 1 O2 8(C ) 1 1 1 2.841 166.058 5 N2 11(G ) 1 O2* 9(U ) 1 1 1 2.835 124.213 5 N6 13(A ) 1 O4 7(U ) 1 1 1 2.892 179.730 5 N1 14(G ) 1 N3 6(C ) 1 1 1 2.868 178.482 5 N2 14(G ) 1 O2 6(C ) 1 1 1 2.801 170.186 5 N4 15(C ) 1 O6 5(G ) 1 1 1 2.839 161.710 5 N3 16(U ) 1 O6 4(G ) 1 1 1 2.961 174.147 5 N3 17(U ) 1 N1 3(A ) 1 1 1 2.914 179.098 5 N3 18(U ) 1 O6 2(G ) 1 1 1 2.958 175.181 5 N4 19(C ) 1 O6 1(G ) 1 1 1 2.778 177.316 5 ND2 1(ASN) 2 OG 4(SER) 2 1 1 2.709 104.621 5 N 3(LYS) 2 N 2(PRO) 2 1 1 2.770 102.160 5 N 4(SER) 2 OD1 1(ASN) 2 1 1 3.179 152.022 5 N 4(SER) 2 N 3(LYS) 2 1 1 2.839 94.933 5 OG 4(SER) 2 ND2 1(ASN) 2 1 1 2.709 102.031 5 OG 4(SER) 2 OG 20(SER) 2 1 1 3.167 135.205 5 N 5(LEU) 2 O 1(ASN) 2 1 1 2.735 154.911 5 N 5(LEU) 2 N 4(SER) 2 1 1 2.782 99.917 5 N 5(LEU) 2 OG 4(SER) 2 1 1 2.875 93.685 5 N 6(THR) 2 O 2(PRO) 2 1 1 2.768 148.876 5 N 6(THR) 2 N 5(LEU) 2 1 1 2.785 98.391 5 N 7(ASP) 2 O 4(SER) 2 1 1 3.201 131.553 5 N 7(ASP) 2 N 6(THR) 2 1 1 2.670 105.552 5 N 9(LYS) 2 N 8(PRO) 2 1 1 2.797 101.616 5 N 10(LEU) 2 O 7(ASP) 2 1 1 3.194 115.383 5 N 10(LEU) 2 N 9(LYS) 2 1 1 2.736 97.438 5 N 11(LEU) 2 O 7(ASP) 2 1 1 2.835 163.886 5 N 11(LEU) 2 N 10(LEU) 2 1 1 2.767 96.432 5 N 12(LYS) 2 O 8(PRO) 2 1 1 2.700 150.622 5 N 12(LYS) 2 N 11(LEU) 2 1 1 2.759 99.146 5 N 13(ASN) 2 O 9(LYS) 2 1 1 3.099 155.180 5 N 13(ASN) 2 O 10(LEU) 2 1 1 3.109 114.447 5 N 13(ASN) 2 N 12(LYS) 2 1 1 2.761 97.682 5 N 17(TRP) 2 O 13(ASN) 2 1 1 2.796 161.207 5 N 17(TRP) 2 O 14(ILE) 2 1 1 3.066 103.792 5 N 17(TRP) 2 N 16(MET) 2 1 1 2.738 98.353 5 N 18(LEU) 2 O 14(ILE) 2 1 1 2.733 159.110 5 N 18(LEU) 2 O 15(PRO) 2 1 1 3.080 110.682 5 N 18(LEU) 2 N 17(TRP) 2 1 1 2.793 96.280 5 N 19(LYS) 2 O 15(PRO) 2 1 1 2.773 160.327 5 N 19(LYS) 2 O 16(MET) 2 1 1 3.016 104.325 5 N 19(LYS) 2 N 18(LEU) 2 1 1 2.784 97.950 5 N 20(SER) 2 O 16(MET) 2 1 1 2.744 155.430 5 N 20(SER) 2 O 17(TRP) 2 1 1 3.182 115.781 5 N 20(SER) 2 N 19(LYS) 2 1 1 2.756 97.868 5 N 21(LEU) 2 O 17(TRP) 2 1 1 3.204 159.394 5 N 21(LEU) 2 O 18(LEU) 2 1 1 2.999 110.642 5 N 21(LEU) 2 N 20(SER) 2 1 1 2.790 97.048 5 N 22(ARG) 2 O 18(LEU) 2 1 1 2.749 149.576 5 N 22(ARG) 2 O 19(LYS) 2 1 1 2.989 111.285 5 N 22(ARG) 2 N 21(LEU) 2 1 1 2.734 101.584 5 N 23(LEU) 2 O 18(LEU) 2 1 1 3.250 146.269 5 N 23(LEU) 2 N 22(ARG) 2 1 1 2.654 106.516 5 N 24(HIS) 2 N 23(LEU) 2 1 1 2.679 104.707 5 N 25(LYS) 2 N 24(HIS) 2 1 1 2.683 104.988 5 N 26(TYR) 2 O 23(LEU) 2 1 1 2.735 153.805 5 N 26(TYR) 2 N 25(LYS) 2 1 1 2.786 97.367 5 N 27(SER) 2 O 24(HIS) 2 1 1 2.692 127.356 5 N 27(SER) 2 N 26(TYR) 2 1 1 2.692 105.334 5 N 28(ASP) 2 N 27(SER) 2 1 1 2.762 100.305 5 N 29(ALA) 2 O 26(TYR) 2 1 1 2.699 136.529 5 N 29(ALA) 2 N 28(ASP) 2 1 1 2.723 101.849 5 N 30(LEU) 2 O 26(TYR) 2 1 1 2.611 162.634 5 N 30(LEU) 2 N 29(ALA) 2 1 1 2.861 96.205 5 N 31(SER) 2 O 27(SER) 2 1 1 2.932 143.768 5 N 31(SER) 2 N 30(LEU) 2 1 1 2.794 99.011 5 N 33(THR) 2 N 32(GLY) 2 1 1 2.654 106.675 5 N 36(ILE) 2 N 35(TRP) 2 1 1 2.678 104.205 5 N 37(GLU) 2 O 34(PRO) 2 1 1 3.229 126.597 5 N 37(GLU) 2 N 36(ILE) 2 1 1 2.789 96.537 5 N 38(LEU) 2 O 34(PRO) 2 1 1 2.756 155.895 5 N 38(LEU) 2 N 37(GLU) 2 1 1 2.698 100.485 5 N 39(ILE) 2 O 35(TRP) 2 1 1 2.803 164.956 5 N 39(ILE) 2 N 38(LEU) 2 1 1 2.806 95.651 5 N 40(TYR) 2 O 37(GLU) 2 1 1 2.771 144.345 5 N 40(TYR) 2 N 39(ILE) 2 1 1 2.667 105.557 5 N 41(LEU) 2 O 38(LEU) 2 1 1 2.758 164.756 5 N 41(LEU) 2 N 40(TYR) 2 1 1 2.670 106.803 5 N 44(GLU) 2 N 43(ASP) 2 1 1 2.767 99.503 5 N 45(THR) 2 O 42(ASP) 2 1 1 3.069 111.808 5 N 45(THR) 2 N 44(GLU) 2 1 1 2.764 97.450 5 N 46(LEU) 2 O 42(ASP) 2 1 1 2.821 164.481 5 N 46(LEU) 2 N 45(THR) 2 1 1 2.770 95.993 5 N 47(GLU) 2 O 43(ASP) 2 1 1 2.750 159.424 5 N 47(GLU) 2 N 46(LEU) 2 1 1 2.781 97.099 5 N 48(LYS) 2 O 44(GLU) 2 1 1 2.754 163.280 5 N 48(LYS) 2 N 47(GLU) 2 1 1 2.813 96.602 5 N 49(LYS) 2 O 45(THR) 2 1 1 2.749 160.997 5 N 49(LYS) 2 N 48(LYS) 2 1 1 2.779 98.366 5 N 50(GLY) 2 O 46(LEU) 2 1 1 2.748 164.248 5 N 50(GLY) 2 N 49(LYS) 2 1 1 2.803 96.221 5 N 53(ALA) 2 N 52(LEU) 2 1 1 2.808 97.122 5 N 55(GLY) 2 O5* 9(U ) 1 1 1 2.913 140.232 5 N 55(GLY) 2 N 54(LEU) 2 1 1 2.745 95.792 5 N 56(ALA) 2 N 55(GLY) 2 1 1 2.828 94.057 5 N 57(ARG) 2 O 53(ALA) 2 1 1 2.814 158.084 5 N 57(ARG) 2 O 54(LEU) 2 1 1 2.894 106.481 5 N 57(ARG) 2 N 56(ALA) 2 1 1 2.772 97.510 5 NE 57(ARG) 2 O 52(LEU) 2 1 1 2.859 113.534 5 NH1 57(ARG) 2 OE1 47(GLU) 2 1 1 3.072 119.940 5 NH2 57(ARG) 2 O 52(LEU) 2 1 1 3.155 110.324 5 N 58(ARG) 2 O 54(LEU) 2 1 1 2.691 151.005 5 N 58(ARG) 2 O 55(GLY) 2 1 1 2.898 115.151 5 N 58(ARG) 2 N 57(ARG) 2 1 1 2.760 100.122 5 N 59(LYS) 2 O 55(GLY) 2 1 1 2.782 173.658 5 N 59(LYS) 2 N 58(ARG) 2 1 1 2.853 94.690 5 N 60(LEU) 2 O 56(ALA) 2 1 1 2.748 160.681 5 N 60(LEU) 2 N 59(LYS) 2 1 1 2.796 96.074 5 N 61(LEU) 2 O 57(ARG) 2 1 1 2.698 144.353 5 N 61(LEU) 2 O 58(ARG) 2 1 1 3.129 106.870 5 N 61(LEU) 2 N 60(LEU) 2 1 1 2.758 97.334 5 N 62(LYS) 2 O 58(ARG) 2 1 1 2.811 166.266 5 N 62(LYS) 2 N 61(LEU) 2 1 1 2.818 95.537 5 N 63(ALA) 2 O 59(LYS) 2 1 1 2.792 172.528 5 N 63(ALA) 2 N 62(LYS) 2 1 1 2.828 95.839 5 N 64(PHE) 2 O 60(LEU) 2 1 1 2.748 168.821 5 N 64(PHE) 2 N 63(ALA) 2 1 1 2.825 95.324 5 N 65(GLY) 2 O 61(LEU) 2 1 1 2.706 148.232 5 N 65(GLY) 2 O 62(LYS) 2 1 1 2.956 109.847 5 N 65(GLY) 2 N 64(PHE) 2 1 1 2.750 98.469 5 N 66(ILE) 2 O 62(LYS) 2 1 1 2.801 164.633 5 N 66(ILE) 2 O 63(ALA) 2 1 1 3.078 108.151 5 N 66(ILE) 2 N 65(GLY) 2 1 1 2.799 95.437 5 N 67(VAL) 2 O 63(ALA) 2 1 1 2.780 164.108 5 N 67(VAL) 2 N 66(ILE) 2 1 1 2.786 97.734 5 N 68(ILE) 2 O 64(PHE) 2 1 1 2.720 161.333 5 N 68(ILE) 2 N 67(VAL) 2 1 1 2.797 98.057 5 N 69(ASP) 2 O 65(GLY) 2 1 1 2.824 156.075 5 N 69(ASP) 2 O 66(ILE) 2 1 1 3.088 107.961 5 N 69(ASP) 2 N 68(ILE) 2 1 1 2.747 97.899 5 N 70(TYR) 2 O 66(ILE) 2 1 1 2.789 165.878 5 N 70(TYR) 2 N 69(ASP) 2 1 1 2.806 95.298 5 N 71(LYS) 2 O 67(VAL) 2 1 1 2.728 158.521 5 N 71(LYS) 2 N 70(TYR) 2 1 1 2.772 98.130 5 N 72(GLU) 2 O 68(ILE) 2 1 1 2.732 159.023 5 N 72(GLU) 2 O 69(ASP) 2 1 1 3.137 110.338 5 N 72(GLU) 2 N 71(LYS) 2 1 1 2.777 97.389 5 N 73(ARG) 2 O 69(ASP) 2 1 1 2.782 165.309 5 N 73(ARG) 2 N 72(GLU) 2 1 1 2.790 96.575 5 N 74(ASP) 2 O 70(TYR) 2 1 1 2.735 148.228 5 N 74(ASP) 2 O 71(LYS) 2 1 1 3.113 115.028 5 N 74(ASP) 2 N 73(ARG) 2 1 1 2.740 100.183 5 N 75(LEU) 2 N 74(ASP) 2 1 1 2.704 104.261 5 N 76(ILE) 2 N 75(LEU) 2 1 1 2.619 107.651 5 N 78(ARG) 2 OD2 77(ASP) 2 1 1 2.422 90.171 5 N 79(SER) 2 OD2 77(ASP) 2 1 1 2.792 167.917 5 N 79(SER) 2 N 78(ARG) 2 1 1 2.661 104.648 5 OG 79(SER) 2 OD1 77(ASP) 2 1 1 3.286 144.045 5 N 80(ALA) 2 O 77(ASP) 2 1 1 2.784 172.899 5 N 80(ALA) 2 N 79(SER) 2 1 1 2.693 102.603 5 N 81(TYR) 2 O 78(ARG) 2 1 1 2.691 138.058 5 N 81(TYR) 2 N 80(ALA) 2 1 1 2.758 99.828 5 Angle cutoff (40.0 degrees suggested) Use only Watson Crick basepairing (false suggested) (y/n): Enter cvs file name (with path) for output of CalcCoPlanarBasesSet.: Doing CalcCoPlanarBasesSet with arguments: [45.0, true, 2b6g_wc.csv] Trying to match bases to eachother for number of bases: 19 Considering number of hydrogen bonds: 170 Results contains number of sets of co-planar bases: 6 Results: Residue: 1( G) Mol: 1 Model: 1 Entry: 1 Residue: 19( C) Mol: 1 Model: 1 Entry: 1 Residue: 3( A) Mol: 1 Model: 1 Entry: 1 Residue: 17( U) Mol: 1 Model: 1 Entry: 1 Residue: 5( G) Mol: 1 Model: 1 Entry: 1 Residue: 15( C) Mol: 1 Model: 1 Entry: 1 Residue: 6( C) Mol: 1 Model: 1 Entry: 1 Residue: 14( G) Mol: 1 Model: 1 Entry: 1 Residue: 7( U) Mol: 1 Model: 1 Entry: 1 Residue: 13( A) Mol: 1 Model: 1 Entry: 1 Residue: 8( C) Mol: 1 Model: 1 Entry: 1 Residue: 11( G) Mol: 1 Model: 1 Entry: 1 Writing results to file: 2b6g_wc.csv Wattos started at: January 19, 2007 10:21:12 AM CST Wattos stopped at: January 19, 2007 10:21:16 AM CST Wattos took (#ms): 3322