data_bmse000864 save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000864 _Entry.Title uridine _Entry.Version_type update _Entry.Submission_date 2011-11-08 _Entry.Accession_date 2011-11-14 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2011-11-14 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.21 _Entry.Original_NMR_STAR_version 3.1.1.7 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details ? _Entry.BMRB_internal_directory_name uridine loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 Francisca Jofre F. ? ? bmse000864 2 Mark Anderson M. E. ? bmse000864 3 John Markley J. L. ? bmse000864 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics "Madison Metabolomics Consortium" MMC bmse000864 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000864 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID "13C chemical shifts" 15 bmse000864 "1H chemical shifts" 10 bmse000864 stop_ loop_ _Release.Release_number _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 2011-11-14 2011-11-08 original BMRB "Original spectra from MMC" bmse000864 2 2011-12-14 2011-12-14 update BMRB "Set Assembly.Name to match Chem_comp.name" bmse000864 3 2012-09-13 2012-09-13 update BMRB "Added PubChem SID 126596904 to database loop" bmse000864 4 2012-09-18 2012-09-18 update BMRB "Fixed bad reference concentrations in sample loops" bmse000864 5 2012-10-12 2012-10-12 update BMRB "Set assigned_chemical_shifts with data from bmse000158" bmse000864 6 2012-10-17 2012-10-17 update BMRB "Set all _Chem_comp_SMILES Types to lower case" bmse000864 stop_ save_ save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000864 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title 'Database resources of the National Center for Biotechnology Information.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 _Citation.Details ? loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. ? bmse000864 1 2 T. Barrett T. ? ? bmse000864 1 3 D. Benson D. A. ? bmse000864 1 4 S. Bryant S. H. ? bmse000864 1 5 K. Canese K. ? ? bmse000864 1 6 V. Chetvenin V. ? ? bmse000864 1 7 D. Church D. M. ? bmse000864 1 8 M. DiCuccio M. ? ? bmse000864 1 9 R. Edgar R. ? ? bmse000864 1 10 S. Federhen S. ? ? bmse000864 1 11 L. Geer L. Y. ? bmse000864 1 12 W. Helmberg W. ? ? bmse000864 1 13 Y. Kapustin Y. ? ? bmse000864 1 14 D. Kenton D. L. ? bmse000864 1 15 O. Khovayko O. ? ? bmse000864 1 16 D. Lipman D. J. ? bmse000864 1 17 T. Madden T. L. ? bmse000864 1 18 D. Maglott D. R. ? bmse000864 1 19 J. Ostell J. ? ? bmse000864 1 20 K. Pruitt K. D. ? bmse000864 1 21 G. Schuler G. D. ? bmse000864 1 22 L. Schriml L. M. ? bmse000864 1 23 E. Sequeira E. ? ? bmse000864 1 24 S. Sherry S. T. ? bmse000864 1 25 K. Sirotkin K. ? ? bmse000864 1 26 A. Souvorov A. ? ? bmse000864 1 27 G. Starchenko G. ? ? bmse000864 1 28 T. Suzek T. O. ? bmse000864 1 29 R. Tatusov R. ? ? bmse000864 1 30 T. Tatusova T. A. ? bmse000864 1 31 L. Bagner L. ? ? bmse000864 1 32 E. Yaschenko E. ? ? bmse000864 1 stop_ save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000864 _Assembly.ID 1 _Assembly.Name Uridine _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions ? _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 uridine 1 $uridine yes native no no . . . bmse000864 1 stop_ save_ save_uridine _Entity.Sf_category entity _Entity.Sf_framecode uridine _Entity.Entry_ID bmse000864 _Entity.ID 1 _Entity.BMRB_code ? _Entity.Name Uridine _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000864 1 stop_ save_ save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000864 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $uridine . n/a "multiple natural sources" yes "not applicable" n/a . . n/a n/a n/a n/a . . . . . . . . . . . . . . . . . . . . . bmse000864 1 stop_ save_ save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000864 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $uridine . "chemical synthesis" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . bmse000864 1 stop_ save_ save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000864 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name Uridine _Chem_comp.Type non-polymer _Chem_comp.BMRB_code ? _Chem_comp.PDB_code ? _Chem_comp.InCHi_code ; InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1 ; _Chem_comp.Mon_nstd_flag ? _Chem_comp.Std_deriv_one_letter_code ? _Chem_comp.Std_deriv_three_letter_code ? _Chem_comp.Std_deriv_BMRB_code ? _Chem_comp.Std_deriv_PDB_code ? _Chem_comp.Formal_charge ? _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula 'C9 H12 N2 O6' _Chem_comp.Formula_weight 244.2013800000 _Chem_comp.Formula_mono_iso_wt_nat 244.069536128 _Chem_comp.Formula_mono_iso_wt_13C 253.099729668 _Chem_comp.Formula_mono_iso_wt_15N 246.063605915 _Chem_comp.Formula_mono_iso_wt_13C_15N 255.0937994548 _Chem_comp.Image_file_name standards/uridine/lit/3593.png _Chem_comp.Image_file_format png _Chem_comp.Topo_file_name ? _Chem_comp.Topo_file_format ? _Chem_comp.Struct_file_name standards/uridine/lit/3593.mol _Chem_comp.Struct_file_format mol _Chem_comp.Stereochem_param_file_name ? _Chem_comp.Details ? _Chem_comp.DB_query_date ? _Chem_comp.DB_last_query_revised_last_date ? loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID "Uracil, 1-beta-D-ribofuranosyl-" synonym bmse000864 1 1-beta-D-Ribofuranosyluracil synonym bmse000864 1 URIDINE synonym bmse000864 1 Uridin synonym bmse000864 1 "Uracil riboside" synonym bmse000864 1 Uridine synonym bmse000864 1 Urd synonym bmse000864 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione IUPAC bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-methylol-tetrahydrofuran-2-yl]pyrimidine-2,4-quinone IUPAC_TRADITIONAL bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione IUPAC_CAS bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione IUPAC_OPENEYE bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione IUPAC_SYSTEMATIC bmse000864 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID isomeric C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O bmse000864 1 canonical C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O bmse000864 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Oxidation_number _Chem_comp_atom.Unpaired_electron_number _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID H1 H ? ? ? ? 5.6238 2.2671 bmse000864 1 H2 H ? ? ? ? 5.6238 0.6471 bmse000864 1 H3 H ? ? ? ? 3.1085 -1.9847 bmse000864 1 H4 H ? ? ? ? 2.9734 -1.5691 bmse000864 1 H5 H ? ? ? ? 5.3332 -1.9847 bmse000864 1 H6 H ? ? ? ? 3.6684 -0.2614 bmse000864 1 H7 H ? ? ? ? 4.7514 -3.1625 bmse000864 1 H8 H ? ? ? ? 5.4795 -3.4867 bmse000864 1 H9 H ? ? ? ? 2.8179 2.2671 bmse000864 1 H10 H ? ? ? ? 3.3852 -3.4571 bmse000864 1 H11 H ? ? ? ? 2.0000 -1.2365 bmse000864 1 H12 H ? ? ? ? 6.6676 -3.2878 bmse000864 1 C13 C ? ? ? ? 5.0868 1.9571 bmse000864 1 C14 C ? ? ? ? 5.0868 0.9571 bmse000864 1 C15 C ? ? ? ? 4.2208 2.4571 bmse000864 1 C16 C ? ? ? ? 3.3548 0.9571 bmse000864 1 C17 C ? ? ? ? 3.7208 -2.0817 bmse000864 1 C18 C ? ? ? ? 3.4118 -1.1307 bmse000864 1 C19 C ? ? ? ? 4.7208 -2.0817 bmse000864 1 C20 C ? ? ? ? 4.2208 -0.5429 bmse000864 1 C21 C ? ? ? ? 5.3086 -2.8907 bmse000864 1 N22 N ? ? ? ? 3.3548 1.9571 bmse000864 1 N23 N ? ? ? ? 4.2208 0.4571 bmse000864 1 O24 O ? ? ? ? 4.2208 3.4571 bmse000864 1 O25 O ? ? ? ? 2.4888 0.4571 bmse000864 1 O26 O ? ? ? ? 5.0298 -1.1307 bmse000864 1 O27 O ? ? ? ? 3.1330 -2.8907 bmse000864 1 O28 O ? ? ? ? 2.4607 -0.8216 bmse000864 1 O29 O ? ? ? ? 6.3031 -2.7862 bmse000864 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID H1 H1 BMRB bmse000864 1 H2 H2 BMRB bmse000864 1 H3 H3 BMRB bmse000864 1 H4 H4 BMRB bmse000864 1 H5 H5 BMRB bmse000864 1 H6 H6 BMRB bmse000864 1 H7 H7 BMRB bmse000864 1 H8 H8 BMRB bmse000864 1 H9 H9 BMRB bmse000864 1 H10 H10 BMRB bmse000864 1 H11 H11 BMRB bmse000864 1 H12 H12 BMRB bmse000864 1 C13 C13 BMRB bmse000864 1 C14 C14 BMRB bmse000864 1 C15 C15 BMRB bmse000864 1 C16 C16 BMRB bmse000864 1 C17 C17 BMRB bmse000864 1 C18 C18 BMRB bmse000864 1 C19 C19 BMRB bmse000864 1 C20 C20 BMRB bmse000864 1 C21 C21 BMRB bmse000864 1 N22 N22 BMRB bmse000864 1 N23 N23 BMRB bmse000864 1 O24 O24 BMRB bmse000864 1 O25 O25 BMRB bmse000864 1 O26 O26 BMRB bmse000864 1 O27 O27 BMRB bmse000864 1 O28 O28 BMRB bmse000864 1 O29 O29 BMRB bmse000864 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Details _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING H1 C13 ? bmse000864 1 2 covalent SING H2 C14 ? bmse000864 1 3 covalent SING H3 C17 ? bmse000864 1 4 covalent SING H4 C18 ? bmse000864 1 5 covalent SING H5 C19 ? bmse000864 1 6 covalent SING H6 C20 ? bmse000864 1 7 covalent SING H7 C21 ? bmse000864 1 8 covalent SING H8 C21 ? bmse000864 1 9 covalent SING H9 N22 ? bmse000864 1 10 covalent SING H10 O27 ? bmse000864 1 11 covalent SING H11 O28 ? bmse000864 1 12 covalent SING H12 O29 ? bmse000864 1 13 covalent DOUB C13 C14 ? bmse000864 1 14 covalent SING C13 C15 ? bmse000864 1 15 covalent SING C14 N23 ? bmse000864 1 16 covalent SING C15 N22 ? bmse000864 1 17 covalent DOUB C15 O24 ? bmse000864 1 18 covalent SING C16 N22 ? bmse000864 1 19 covalent SING C16 N23 ? bmse000864 1 20 covalent DOUB C16 O25 ? bmse000864 1 21 covalent SING C17 C18 ? bmse000864 1 22 covalent SING C17 C19 ? bmse000864 1 23 covalent SING C17 O27 ? bmse000864 1 24 covalent SING C18 C20 ? bmse000864 1 25 covalent SING C18 O28 ? bmse000864 1 26 covalent SING C19 C21 ? bmse000864 1 27 covalent SING C19 O26 ? bmse000864 1 28 covalent SING C20 N23 ? bmse000864 1 29 covalent SING C20 O26 ? bmse000864 1 30 covalent SING C21 O29 ? bmse000864 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_code _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_experimental_method _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_details _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 126596904 sid ? Uridine ? "matching entry" ? bmse000864 1 no PubChem 148890 sid ? Uridine ? "matching entry" ? bmse000864 1 no PubChem 6029 cid ? Uridine ? "matching entry" ? bmse000864 1 no PubChem 3593 sid ? Uridine ? "matching entry" ? bmse000864 1 no KEGG C00299 "compound ID" ? Uridine ? "matching entry" ? bmse000864 1 no "CAS Registry" 12693-39-9 "registry number" ? Uridine ? "matching entry" ? bmse000864 1 no "CAS Registry" 58-96-8 "registry number" ? Uridine ? "matching entry" ? bmse000864 1 no "CAS Registry" 68184-15-6 "registry number" ? Uridine ? "matching entry" ? bmse000864 1 no CHEBI 16704 ? ? Uridine ? "matching entry" ? bmse000864 1 no EINECS 200-407-5 ? ? Uridine ? "matching entry" ? bmse000864 1 no NSC 20256 ? ? Uridine ? "matching entry" ? bmse000864 1 no PDB URI "Chemical Component" ? Uridine ? "matching entry" ? bmse000864 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000864 1 stop_ save_ save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000864 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 Uridine "natural abundance" 1 $uridine ? Solute 100 ? ? mM ? sigma Uridine ? bmse000864 1 2 D2O ? ? ? ? Solvent 100 ? ? % ? ? ? ? bmse000864 1 3 "sodium phosphate" ? ? ? ? Buffer 50 ? ? mM ? ? ? ? bmse000864 1 4 "sodium azide" ? ? ? ? Cytocide 500 ? ? uM ? ? ? ? bmse000864 1 5 DSS ? ? ? ? Reference 500 ? ? uM ? ? ? ? bmse000864 1 stop_ save_ save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000864 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 ? pH bmse000864 1 temperature 298 ? K bmse000864 1 stop_ save_ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000864 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 _Software.Details ? loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID "Bruker Biospin" ? ? bmse000864 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000864 1 Processing bmse000864 1 "Data analysis" bmse000864 1 "Peak picking" bmse000864 1 stop_ save_ save_Bruker_DMX_600 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_600 _NMR_spectrometer.Entry_ID bmse000864 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 600 save_ save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000864 _Experiment_list.ID 1 _Experiment_list.Details ? loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 "1D 1H" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 2 "2D [1H,1H]-TOCSY" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 3 "1D DEPT90" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 4 "1D DEPT135" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 5 "2D [1H,13C]-HSQC" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 6 "2D [1H,13C]-HMBC" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 7 "2D [1H,1H]-COSY" yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 ? ? bmse000864 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 standards/uridine/nmr/bmse000864/1H/* "Time-domain (raw spectral data)" ? bmse000864 1 1 standards/uridine/nmr/bmse000864/spectra_png/1H/00.png "Spectral image" ? bmse000864 1 1 standards/uridine/nmr/bmse000864/spectra_png/1H/01.png "Spectral image" ? bmse000864 1 1 standards/uridine/nmr/bmse000864/spectra_png/1H/02.png "Spectral image" ? bmse000864 1 2 standards/uridine/nmr/bmse000864/HH_TOCSY/* "Time-domain (raw spectral data)" ? bmse000864 1 2 standards/uridine/nmr/bmse000864/spectra_png/HH_TOCSY/00.png "Spectral image" ? bmse000864 1 2 standards/uridine/nmr/bmse000864/spectra_png/HH_TOCSY/01.png "Spectral image" ? bmse000864 1 3 standards/uridine/nmr/bmse000864/DEPT_90/* "Time-domain (raw spectral data)" ? bmse000864 1 3 standards/uridine/nmr/bmse000864/spectra_png/DEPT_90/00.png "Spectral image" ? bmse000864 1 3 standards/uridine/nmr/bmse000864/spectra_png/DEPT_90/01.png "Spectral image" ? bmse000864 1 4 standards/uridine/nmr/bmse000864/DEPT_135/* "Time-domain (raw spectral data)" ? bmse000864 1 4 standards/uridine/nmr/bmse000864/spectra_png/DEPT_135/00.png "Spectral image" ? bmse000864 1 4 standards/uridine/nmr/bmse000864/spectra_png/DEPT_135/01.png "Spectral image" ? bmse000864 1 5 standards/uridine/nmr/bmse000864/1H_13C_HSQC/* "Time-domain (raw spectral data)" ? bmse000864 1 5 standards/uridine/nmr/bmse000864/spectra_png/1H_13C_HSQC/00.png "Spectral image" ? bmse000864 1 5 standards/uridine/nmr/bmse000864/spectra_png/1H_13C_HSQC/01.png "Spectral image" ? bmse000864 1 6 standards/uridine/nmr/bmse000864/1H_13C_HMBC/* "Time-domain (raw spectral data)" ? bmse000864 1 6 standards/uridine/nmr/bmse000864/spectra_png/1H_13C_HMBC/00.png "Spectral image" ? bmse000864 1 6 standards/uridine/nmr/bmse000864/spectra_png/1H_13C_HMBC/01.png "Spectral image" ? bmse000864 1 7 standards/uridine/nmr/bmse000864/HH_COSY/* "Time-domain (raw spectral data)" ? bmse000864 1 7 standards/uridine/nmr/bmse000864/spectra_png/HH_COSY/00.png "Spectral image" ? bmse000864 1 7 standards/uridine/nmr/bmse000864/spectra_png/HH_COSY/01.png "Spectral image" ? bmse000864 1 stop_ save_ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000864 _Chem_shift_reference.ID 1 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS "methyl protons" ppm 0.00 internal direct 1.000000000 ? ? ? bmse000864 1 C 13 DSS "methyl carbons" ppm 0.00 internal direct 1.000000000 ? ? ? bmse000864 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # Index Value Definition # # # # 1 Unique (geminal atoms and geminal methyl # # groups with identical chemical shifts # # are assumed to be assigned to # # stereospecific atoms) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. Tyr HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. Lys HG and # # HD protons or Trp HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (Lys 12 vs. Lys 27) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000864 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details 'The chemical shift assignments have been taken from BMRB entry bmse000158' loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 H1 H 1 5.887 ? ? 1 ? ? ? H1 ? bmse000864 1 2 1 1 1 H2 H 1 7.878 ? ? 1 ? ? ? H2 ? bmse000864 1 3 1 1 1 H3 H 1 4.222 ? ? 1 ? ? ? H3 ? bmse000864 1 4 1 1 1 H4 H 1 4.344 ? ? 1 ? ? ? H4 ? bmse000864 1 5 1 1 1 H5 H 1 4.126 ? ? 1 ? ? ? H5 ? bmse000864 1 6 1 1 1 H6 H 1 5.908 ? ? 1 ? ? ? H6 ? bmse000864 1 7 1 1 1 H7 H 1 3.907 ? ? 2 ? ? ? H7 ? bmse000864 1 8 1 1 1 H7 H 1 3.800 ? ? 2 ? ? ? H7 ? bmse000864 1 9 1 1 1 H8 H 1 3.907 ? ? 2 ? ? ? H8 ? bmse000864 1 10 1 1 1 H8 H 1 3.800 ? ? 2 ? ? ? H8 ? bmse000864 1 11 1 1 1 C13 C 13 105.006 ? ? 1 ? ? ? C13 ? bmse000864 1 12 1 1 1 C13 C 13 104.980 ? ? 1 ? ? ? C13 ? bmse000864 1 13 1 1 1 C14 C 13 144.56 ? ? 1 ? ? ? C14 ? bmse000864 1 14 1 1 1 C15 C 13 169.069 ? ? 1 ? ? ? C15 ? bmse000864 1 15 1 1 1 C16 C 13 154.475 ? ? 1 ? ? ? C16 ? bmse000864 1 16 1 1 1 C17 C 13 72.124 ? ? 1 ? ? ? C17 ? bmse000864 1 17 1 1 1 C17 C 13 72.092 ? ? 1 ? ? ? C17 ? bmse000864 1 18 1 1 1 C18 C 13 76.443 ? ? 1 ? ? ? C18 ? bmse000864 1 19 1 1 1 C18 C 13 76.382 ? ? 1 ? ? ? C18 ? bmse000864 1 20 1 1 1 C19 C 13 86.957 ? ? 1 ? ? ? C19 ? bmse000864 1 21 1 1 1 C19 C 13 86.895 ? ? 1 ? ? ? C19 ? bmse000864 1 22 1 1 1 C20 C 13 92.072 ? ? 1 ? ? ? C20 ? bmse000864 1 23 1 1 1 C20 C 13 92.036 ? ? 1 ? ? ? C20 ? bmse000864 1 24 1 1 1 C21 C 13 63.476 ? ? 1 ? ? ? C21 ? bmse000864 1 25 1 1 1 C21 C 13 63.432 ? ? 1 ? ? ? C21 ? bmse000864 1 stop_ loop_ _Ambiguous_atom_chem_shift.Ambiguous_shift_set_ID _Ambiguous_atom_chem_shift.Atom_chem_shift_ID _Ambiguous_atom_chem_shift.Entry_ID _Ambiguous_atom_chem_shift.Assigned_chem_shift_list_ID 1 7 bmse000864 1 1 9 bmse000864 1 2 8 bmse000864 1 2 10 bmse000864 1 stop_ save_ save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000864 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 _Spectral_peak_list.Details ? loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Magnetization_linkage_ID _Spectral_dim.Sweep_width _Spectral_dim.Encoding_code _Spectral_dim.Encoded_source_dimension_ID _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 "Full H" ? 9615.38461538462 ? ? bmse000864 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Method_ID _Spectral_peak_software.Method_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 ? ? bmse000864 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Figure_of_merit _Spectral_transition.Details _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 ? ? bmse000864 1 2 ? ? bmse000864 1 3 ? ? bmse000864 1 4 ? ? bmse000864 1 5 ? ? bmse000864 1 6 ? ? bmse000864 1 7 ? ? bmse000864 1 8 ? ? bmse000864 1 9 ? ? bmse000864 1 10 ? ? bmse000864 1 11 ? ? bmse000864 1 12 ? ? bmse000864 1 13 ? ? bmse000864 1 14 ? ? bmse000864 1 15 ? ? bmse000864 1 16 ? ? bmse000864 1 17 ? ? bmse000864 1 18 ? ? bmse000864 1 19 ? ? bmse000864 1 20 ? ? bmse000864 1 21 ? ? bmse000864 1 22 ? ? bmse000864 1 23 ? ? bmse000864 1 24 ? ? bmse000864 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Intensity_val_err _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 4.96 ? Height bmse000864 1 2 5.17 ? Height bmse000864 1 3 3.40 ? Height bmse000864 1 4 3.60 ? Height bmse000864 1 5 3.53 ? Height bmse000864 1 6 3.49 ? Height bmse000864 1 7 2.19 ? Height bmse000864 1 8 4.16 ? Height bmse000864 1 9 2.67 ? Height bmse000864 1 10 2.24 ? Height bmse000864 1 11 4.45 ? Height bmse000864 1 12 2.49 ? Height bmse000864 1 13 1.25 ? Height bmse000864 1 14 2.41 ? Height bmse000864 1 15 2.40 ? Height bmse000864 1 16 1.27 ? Height bmse000864 1 17 2.11 ? Height bmse000864 1 18 2.23 ? Height bmse000864 1 19 3.27 ? Height bmse000864 1 20 3.28 ? Height bmse000864 1 21 2.98 ? Height bmse000864 1 22 3.04 ? Height bmse000864 1 23 2.16 ? Height bmse000864 1 24 2.11 ? Height bmse000864 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Chem_shift_val_err _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 7.8856 ? bmse000864 1 2 1 7.8721 ? bmse000864 1 3 1 5.9112 ? bmse000864 1 4 1 5.9038 ? bmse000864 1 5 1 5.8934 ? bmse000864 1 6 1 5.8799 ? bmse000864 1 7 1 4.3520 ? bmse000864 1 8 1 4.3437 ? bmse000864 1 9 1 4.3358 ? bmse000864 1 10 1 4.2310 ? bmse000864 1 11 1 4.2219 ? bmse000864 1 12 1 4.2130 ? bmse000864 1 13 1 4.1354 ? bmse000864 1 14 1 4.1280 ? bmse000864 1 15 1 4.1227 ? bmse000864 1 16 1 4.1148 ? bmse000864 1 17 1 3.9191 ? bmse000864 1 18 1 3.9145 ? bmse000864 1 19 1 3.8977 ? bmse000864 1 20 1 3.8932 ? bmse000864 1 21 1 3.8152 ? bmse000864 1 22 1 3.8080 ? bmse000864 1 23 1 3.7939 ? bmse000864 1 24 1 3.7867 ? bmse000864 1 stop_ save_