23-Mar-2005 22:50:21 LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University ___________________________________________________________________ CYANA 1.0.6 (gnu-lam) Copyright (c) 2002 Peter Guntert Contains CANDID, copyright (c) 2002 Peter Guntert, Torsten Herrmann All rights reserved. ___________________________________________________________________ cyana> cyana> cyana> - bc019267: read lib ./cyana-zn.lib Library file "./cyana-zn.lib" read, 53 residue types. - bc019267: read seq ./bc019267.seq Sequence file "./bc019267.seq" read, 67 residues. - bc019267: peakcheck peaks=c13no,n15no,c13noar prot=bc019267 ------------------------------------------------------------ Peak list : c13no Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks c13no *** WARNING: Inconsistent heavy atom assignment for peak 1783. *** WARNING: Inconsistent heavy atom assignment for peak 1784. *** WARNING: Inconsistent heavy atom assignment for peak 1785. *** WARNING: Inconsistent heavy atom assignment for peak 1786. *** WARNING: Inconsistent heavy atom assignment for peak 1901. *** WARNING: Inconsistent heavy atom assignment for peak 2591. Peak list "c13no.peaks" read, 1886 peaks, 1246 assignments. - peakcheck: atom shift unusual Atom shift limit1 - limit2 CB ARG+ 58 36.158 25.200 35.800 HZ PHE 60 5.889 6.190 7.630 HA LEU 66 2.860 3.130 5.790 QE PHE 70 7.566 5.560 7.510 CE1 HIS 75 141.656 126.600 140.400 NE ARG+ 94 111.868 78.960 89.300 6 shifts outside expected range. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks CD PRO 37 51.741 50.962 0.816 3 HB3 PRO 37 1.983 1.986 0.324 7 HD2 PRO 37 3.862 3.722 0.140 1 HB3 PRO 43 2.027 2.026 0.288 8 HN ASP- 44 8.306 8.342 0.036 4 HB3 PRO 46 2.238 2.215 0.039 16 HG3 PRO 46 2.045 1.986 0.059 11 HB2 TYR 59 2.955 2.936 0.037 16 HN THR 64 7.904 7.913 0.030 6 HA ASN 65 4.348 4.336 0.033 7 QE PHE 70 7.566 7.573 0.032 7 HG3 LYS+ 73 1.652 1.655 0.076 8 HB2 ARG+ 78 1.890 1.890 0.031 10 HB3 ARG+ 78 1.959 2.021 0.067 6 HG2 LYS+ 80 1.467 1.536 0.071 8 HB3 LEU 82 1.789 1.777 0.046 10 QD2 LEU 82 0.902 0.901 0.030 15 HB VAL 84 2.171 2.157 0.039 6 HN GLU- 85 8.223 8.241 0.033 4 HB3 GLU- 85 1.752 1.902 0.157 5 20 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 219 1 0.071 HG2 LYS+ 80 398 3 -0.779 CD PRO 37 653 2 0.324 HB3 PRO 37 711 1 0.062 HB3 ARG+ 78 711 2 0.062 HB3 ARG+ 78 763 1 0.288 HB3 PRO 43 766 2 -0.059 HG3 PRO 46 768 2 -0.059 HG3 PRO 46 1330 2 -0.059 HG3 PRO 46 1331 2 -0.059 HG3 PRO 46 1332 1 -0.059 HG3 PRO 46 1332 2 -0.059 HG3 PRO 46 1333 1 -0.059 HG3 PRO 46 1361 1 -0.030 QD2 LEU 82 1514 1 0.032 QE PHE 70 1567 1 -0.039 HB3 PRO 46 1682 1 -0.046 HB3 LEU 82 1766 1 -0.059 HG3 PRO 46 1769 1 -0.059 HG3 PRO 46 1772 1 -0.030 HB2 TYR 59 1773 1 -0.030 HB2 TYR 59 1822 1 0.036 HN ASP- 44 1930 2 -0.076 HG3 LYS+ 73 2045 1 0.036 HN ASP- 44 2174 1 -0.042 HB3 LEU 82 2197 2 0.139 HB3 GLU- 85 2328 1 0.033 HN GLU- 85 2328 2 0.150 HB3 GLU- 85 2329 1 0.157 HB3 GLU- 85 2329 2 0.150 HB3 GLU- 85 2331 2 0.150 HB3 GLU- 85 2336 2 0.062 HB3 ARG+ 78 2337 2 0.062 HB3 ARG+ 78 2360 1 0.036 HN ASP- 44 2439 3 -0.779 CD PRO 37 2442 1 0.036 HN ASP- 44 2490 1 -0.039 HB VAL 84 2523 1 0.067 HB3 ARG+ 78 2529 1 -0.036 HB3 LEU 82 2540 1 -0.059 HG3 PRO 46 2545 1 -0.031 HB2 TYR 59 2546 1 -0.037 HB2 TYR 59 2550 1 -0.059 HG3 PRO 46 2552 1 -0.033 HA ASN 65 2570 1 0.052 HB3 ARG+ 78 2571 1 -0.031 HB2 ARG+ 78 2581 2 0.069 HG2 LYS+ 80 2582 2 0.069 HG2 LYS+ 80 2583 2 0.069 HG2 LYS+ 80 2584 1 0.071 HG2 LYS+ 80 2584 2 0.069 HG2 LYS+ 80 2601 2 -0.140 HD2 PRO 37 2601 3 -0.816 CD PRO 37 2615 1 0.030 HN THR 64 54 deviations larger than tolerance. ------------------------------------------------------------ Peak list : n15no Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks n15no Peak list "n15no.peaks" read, 1010 peaks, 580 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 HA ASN 65 4.348 4.311 0.037 4 QD1 LEU 66 0.275 0.269 0.032 5 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 10 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 17 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 59 1 0.035 HN ALA 96 124 1 -0.032 HA ALA 96 203 1 -0.031 HA GLN 89 302 1 -0.036 HB3 LYS+ 73 418 1 -0.037 HA ASN 65 431 1 -0.074 HB3 LEU 50 471 1 -0.034 HA CYSZ 56 524 1 -0.035 HB2 ASP- 74 532 1 -0.035 HB3 LEU 82 543 1 0.030 HG3 LYS+ 80 554 1 0.032 HN VAL 84 576 1 -0.037 HA ASN 65 628 1 -0.038 HG2 ARG+ 71 655 1 0.033 HA ARG+ 58 662 1 -0.032 HB3 CYSZ 56 667 1 -0.035 HB3 LEU 82 708 1 -0.051 HB3 PRO 46 723 1 -0.032 HA ASN 65 900 1 0.150 HB3 GLU- 85 1559 1 -0.032 QD1 LEU 66 1573 1 -0.037 HA ASN 65 21 deviations larger than tolerance. ------------------------------------------------------------ Peak list : c13noar Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks c13noar *** WARNING: Inconsistent heavy atom assignment for peak 140. *** WARNING: Inconsistent heavy atom assignment for peak 173. *** WARNING: Inconsistent heavy atom assignment for peak 176. *** WARNING: Inconsistent heavy atom assignment for peak 179. *** WARNING: Inconsistent heavy atom assignment for peak 180. *** WARNING: Inconsistent heavy atom assignment for peak 181. *** WARNING: Inconsistent heavy atom assignment for peak 182. *** WARNING: Inconsistent heavy atom assignment for peak 286. *** WARNING: Inconsistent heavy atom assignment for peak 296. *** WARNING: Inconsistent heavy atom assignment for peak 297. *** WARNING: Inconsistent heavy atom assignment for peak 298. Peak list "c13noar.peaks" read, 238 peaks, 142 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HB2 PRO 43 2.347 2.319 0.036 2 HG3 PRO 46 2.045 1.973 0.072 1 CD2 HIS 51 120.175 120.575 0.400 7 HB2 CYSZ 56 2.638 2.677 0.039 1 HB3 CYSZ 56 3.245 3.212 0.033 1 HB2 TYR 59 2.955 2.921 0.034 1 6 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 24 3 0.400 CD2 HIS 51 51 1 -0.033 HB3 CYSZ 56 88 1 -0.034 HB2 TYR 59 98 1 -0.072 HG3 PRO 46 129 1 -0.036 HB2 PRO 43 190 3 0.400 CD2 HIS 51 191 3 0.400 CD2 HIS 51 192 3 0.400 CD2 HIS 51 269 1 0.039 HB2 CYSZ 56 283 3 0.400 CD2 HIS 51 284 3 0.400 CD2 HIS 51 285 3 0.400 CD2 HIS 51 12 deviations larger than tolerance. - bc019267: read prot ./bc019267.prot Chemical shift list "./bc019267.prot" read, 693 chemical shifts. - bc019267: read peaks ./c13no.peaks assigned integrated *** WARNING: Inconsistent heavy atom assignment for peak 1783. Peak list "./c13no.peaks" read, 1240 peaks, 1240 assignments. - bc019267: peaks set volume=abs(volume) Volume of 1240 peaks set. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks CD PRO 37 51.741 50.962 0.779 2 HB3 PRO 43 2.027 2.026 0.288 8 HN ASP- 44 8.306 8.342 0.036 4 HB3 PRO 46 2.238 2.215 0.039 16 HG3 PRO 46 2.045 1.986 0.059 11 HB2 TYR 59 2.955 2.936 0.037 16 HN THR 64 7.904 7.913 0.030 6 HA ASN 65 4.348 4.336 0.033 7 QE PHE 70 7.566 7.573 0.032 7 HG3 LYS+ 73 1.652 1.655 0.076 8 HB2 ARG+ 78 1.890 1.891 0.031 9 HB3 ARG+ 78 1.959 2.021 0.067 6 HG2 LYS+ 80 1.467 1.536 0.071 7 HB3 LEU 82 1.789 1.777 0.046 10 QD2 LEU 82 0.902 0.893 0.030 13 HB VAL 84 2.171 2.157 0.039 6 HN GLU- 85 8.223 8.243 0.033 3 HB3 GLU- 85 1.752 1.902 0.157 5 18 shifts with spread larger than tolerance. - bc019267: caliba bb=2.5E+06 dmax=5.5 Calibration class: backbone 406 of 1240 peaks, 406 of 1240 assignments selected. Calibration function: 2.50E+06 * 1/d**6 351 upper limits added, 6 at lower, 1 at upper limit, average 3.43 A. Calibration class: side-chain 602 of 1240 peaks, 602 of 1240 assignments selected. 602 of 1240 peaks, 602 of 1240 assignments selected. Calibration function: 4.34E+05 * 1/d**4 465 upper limits added, 33 at lower, 75 at upper limit, average 4.37 A. Calibration class: methyl 232 of 1240 peaks, 232 of 1240 assignments selected. Calibration function: 1.45E+05 * 1/d**4 212 upper limits added, 1 at lower, 17 at upper limit, average 5.06 A. - bc019267: write upl c13no_cal.upl Distance constraint file "c13no_cal.upl" written, 1028 upper limits, 1028 assignments. - bc019267: distance delete 1028 distance constraints deleted. - bc019267: read peaks ./n15no.peaks assigned integrated Peak list "./n15no.peaks" read, 579 peaks, 579 assignments. - bc019267: peaks set volume=abs(volume) Volume of 579 peaks set. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 HA ASN 65 4.348 4.311 0.037 3 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 9 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 16 shifts with spread larger than tolerance. - bc019267: caliba bb=7.5E+06 dmax=5.5 Calibration class: backbone 417 of 579 peaks, 417 of 579 assignments selected. Calibration function: 7.50E+06 * 1/d**6 347 upper limits added, 0 at lower, 0 at upper limit, average 3.64 A. Calibration class: side-chain 117 of 579 peaks, 117 of 579 assignments selected. 117 of 579 peaks, 117 of 579 assignments selected. Calibration function: 1.30E+06 * 1/d**4 108 upper limits added, 3 at lower, 37 at upper limit, average 5.17 A. Calibration class: methyl 45 of 579 peaks, 45 of 579 assignments selected. Calibration function: 4.34E+05 * 1/d**4 45 upper limits added, 0 at lower, 15 at upper limit, average 5.79 A. - bc019267: write upl n15no_cal.upl Distance constraint file "n15no_cal.upl" written, 500 upper limits, 500 assignments. - bc019267: distance delete 500 distance constraints deleted. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 HA ASN 65 4.348 4.311 0.037 3 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 9 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 16 shifts with spread larger than tolerance. - bc019267: read peaks ./c13noar.peaks assigned integrated Peak list "./c13noar.peaks" read, 134 peaks, 134 assignments. - bc019267: peaks set volume=abs(volume) Volume of 134 peaks set. - bc019267: caliba bb=9.5E+05 dmax=5.5 Calibration class: backbone 0 of 134 peaks, 0 of 134 assignments selected. Calibration function: 9.50E+05 * 1/d**6 0 upper limits added. Calibration class: side-chain 117 of 134 peaks, 117 of 134 assignments selected. 117 of 134 peaks, 117 of 134 assignments selected. Calibration function: 1.65E+05 * 1/d**4 98 upper limits added, 6 at lower, 0 at upper limit, average 5.44 A. Calibration class: methyl 17 of 134 peaks, 17 of 134 assignments selected. Calibration function: 5.50E+04 * 1/d**4 17 upper limits added, 0 at lower, 0 at upper limit, average 6.10 A. - bc019267: write upl c13no_ar_cal.upl Distance constraint file "c13no_ar_cal.upl" written, 115 upper limits, 115 assignments. - bc019267: distance delete 115 distance constraints deleted. - bc019267: read upl c13no_cal.upl Distance constraint file "c13no_cal.upl" read, 1028 upper limits, 1028 assignments. - bc019267: read upl n15no_cal.upl append Distance constraint file "n15no_cal.upl" read, 500 upper limits, 500 assignments. - bc019267: read upl c13no_ar_cal.upl append Distance constraint file "c13no_ar_cal.upl" read, 115 upper limits, 115 assignments. - bc019267: read upl zinc.upl append Distance constraint file "zinc.upl" read, 4 upper limits, 4 assignments. - bc019267: read lol zinc.lol append Distance constraint file "zinc.lol" read, 4 upper limits, 4 assignments. - bc019267: distance modify Number of modified constraints: 841 - bc019267: distance check Distance constraint Score Upper HB2 LEU 45 - HN GLY 49 13.75 Upper HB2 LEU 45 - HA1 GLY 49 13.75 Upper HB3 LEU 45 - HA1 GLY 49 13.75 Upper HA SER 63 - HN LYS+ 67 4.00 Upper HB3 LEU 45 - HA2 GLY 49 13.75 Upper HA PHE 70 - HB3 HIS 75 6.50 Upper HG12 ILE 61 - HD22 ASN 65 23.00 Upper HG13 ILE 61 - HB3 ASN 65 23.00 Upper HG13 ILE 61 - HD22 ASN 65 23.00 Upper HG12 ILE 61 - HD21 ASN 65 23.00 Upper HG3 PRO 46 - HB2 TYR 59 20.00 Upper HB2 PRO 46 - HB2 TYR 59 20.00 Upper HG3 PRO 46 - HB3 TYR 59 20.00 Upper HB3 PRO 46 - HB3 TYR 59 20.00 Upper HB3 PRO 46 - HB2 TYR 59 20.00 Upper HB2 CYSZ 56 - HE1 HIS 69 4.00 Upper HB3 ARG+ 52 - QE TYR 59 15.75 Upper HB2 ARG+ 52 - QE TYR 59 15.75 Upper HB2 HIS 51 - HB2 LEU 66 9.00 Upper HB3 HIS 51 - HG LEU 66 9.00 Upper HA HIS 51 - HG LEU 66 9.00 Upper HG LEU 66 - QE PHE 70 14.25 Upper HN ARG+ 52 - HG LEU 66 11.00 Upper HG2 ARG+ 52 - QE TYR 59 15.75 Upper QE PHE 60 - HB3 HIS 69 3.00 Upper HE1 HIS 51 - HB2 SER 63 2.50 Upper HE1 HIS 51 - HB3 SER 63 2.50 Upper HB2 HIS 51 - HG LEU 66 9.00 Upper HB3 HIS 51 - HB2 LEU 66 9.00 Upper HA2 GLY 49 - QD TYR 59 6.00 Upper HB2 LEU 45 - HD3 ARG+ 52 4.00 Upper HB2 LEU 45 - HD2 ARG+ 52 4.00 Upper HB2 CYS- 53 - HG LEU 66 11.00 Upper HB3 CYS- 53 - HG LEU 66 11.00 Upper HB2 CYS- 53 - HD2 HIS 69 4.50 Upper HB2 CYS- 53 - QE PHE 60 10.75 Upper HB2 CYS- 53 - HN ARG+ 58 7.00 Upper HB3 CYS- 53 - HD2 HIS 69 4.50 Upper HB2 CYS- 53 - QE PHE 70 5.50 Upper HA PHE 70 - HD2 HIS 75 6.50 Upper HG12 ILE 61 - HB3 ASN 65 23.00 Upper HB2 PRO 46 - HB3 TYR 59 20.00 Upper HD3 PRO 46 - HB2 TYR 59 20.00 Upper HD3 PRO 46 - HB3 TYR 59 20.00 Upper HA1 GLY 47 - HD2 HIS 51 2.75 Upper QD PHE 60 - HB2 ASN 65 16.00 Upper HB3 HIS 51 - HB3 LEU 66 9.00 Upper HB2 HIS 51 - HB3 LEU 66 9.00 Upper HA PHE 70 - HB2 HIS 75 6.50 Upper HB3 PRO 46 - QG2 ILE 61 2.00 Upper QG2 ILE 61 - HD22 ASN 65 23.00 Upper HD2 ARG+ 78 - QD2 LEU 82 7.50 Upper HD3 ARG+ 78 - QD2 LEU 82 7.50 Upper QD2 LEU 45 - HA2 GLY 49 13.75 Upper QD2 LEU 45 - HA1 GLY 49 13.75 Upper QD2 LEU 45 - QD TYR 59 17.00 Upper HB3 PHE 41 - QD1 LEU 50 6.00 Upper QD1 ILE 61 - HD22 ASN 65 23.00 Upper QD1 ILE 61 - HD21 ASN 65 23.00 Upper HB2 CYS- 53 - QD1 LEU 66 11.00 Upper HB3 CYS- 53 - QD1 LEU 66 11.00 Upper HE1 HIS 75 - QD2 LEU 79 9.50 Upper QB ALA 55 - HE1 HIS 75 1.00 Upper HB3 PHE 41 - QD2 LEU 50 6.00 Upper HD2 HIS 75 - QD2 LEU 79 9.50 Upper HD2 HIS 75 - QD1 LEU 79 9.50 Upper HB2 PRO 46 - QG2 ILE 61 2.00 Upper HA ARG+ 52 - HN PHE 60 11.00 Upper HN ASP- 42 - HA2 GLY 48 2.00 Upper HN CYS- 53 - HN ARG+ 58 7.00 Upper HB3 LEU 45 - HN GLY 49 13.75 Upper HN ASP- 42 - HA1 GLY 48 2.00 Upper HB3 CYS- 53 - HN ARG+ 58 7.00 Upper HN ARG+ 52 - QD TYR 59 15.75 Upper HN CYS- 53 - QE PHE 60 10.75 Upper HN CYS- 53 - HG LEU 66 11.00 Upper HN CYS- 53 - QD PHE 60 10.75 Upper HN GLY 49 - QE TYR 59 6.00 Upper HG13 ILE 61 - HD21 ASN 65 23.00 Upper QG2 ILE 61 - HD21 ASN 65 23.00 Upper QE PHE 70 - HE1 HIS 75 6.50 Upper HZ PHE 60 - HE1 HIS 69 3.00 Upper HB3 CYSZ 56 - HE1 HIS 69 4.00 Upper HA1 GLY 49 - QD TYR 59 6.00 Upper HB2 ARG+ 52 - QD TYR 59 15.75 Upper HB3 ARG+ 52 - QD TYR 59 15.75 Upper HB3 LEU 45 - QD TYR 59 17.00 Upper HB2 LEU 45 - QD TYR 59 17.00 Upper QD PHE 60 - HB3 ASN 65 16.00 Upper QD PHE 60 - HB3 LEU 66 15.00 Upper QD PHE 60 - HB2 LEU 66 15.00 Upper QD PHE 60 - HG LEU 66 15.00 Upper QD PHE 60 - HN ASN 65 16.00 Upper HA CYS- 53 - QE PHE 70 5.50 Upper HB3 CYS- 53 - QE PHE 70 5.50 Upper QE PHE 60 - HN LEU 66 15.00 Upper HB3 CYS- 53 - QE PHE 60 10.75 Upper QE PHE 60 - HB2 HIS 69 3.00 Upper QE PHE 60 - HG LEU 66 15.00 Upper QD PHE 70 - HE1 HIS 75 6.50 Upper HG LEU 66 - QD PHE 70 14.25 Upper HB2 CYS- 53 - HZ PHE 60 10.75 Upper HD2 HIS 51 - HA ASP- 62 1.50 Upper HA1 GLY 49 - QE TYR 59 6.00 Upper HA2 GLY 49 - QE TYR 59 6.00 Upper HD3 ARG+ 52 - QE TYR 59 15.75 Upper HD2 ARG+ 52 - QE TYR 59 15.75 Upper HG3 ARG+ 52 - QE TYR 59 15.75 Upper HB3 CYS- 53 - HZ PHE 60 10.75 Upper HA2 GLY 47 - HD2 HIS 51 2.75 Upper HG LEU 66 - HZ PHE 70 14.25 Upper HE1 HIS 75 - QD1 LEU 79 9.50 Upper QD1 LEU 45 - QD TYR 59 17.00 Upper QD1 LEU 45 - QE TYR 59 17.00 Upper QE TYR 87 - QB ALA 92 3.75 Upper QD TYR 87 - QB ALA 92 3.75 Upper QD2 LEU 45 - QE TYR 59 17.00 Upper ZN CYSZ 56 - NE2 HIS 69 3.00 Upper ZN CYSZ 56 - NE2 HIS 75 0.50 Lower ZN CYSZ 56 - NE2 HIS 69 3.00 Lower ZN CYSZ 56 - NE2 HIS 75 0.50 Upper QB PHE 41 - QQD LEU 50 6.00 Upper HB2 PHE 41 - QD1 LEU 50 6.00 Upper HB2 PHE 41 - QD2 LEU 50 6.00 Upper QD PHE 41 - QQD LEU 50 6.00 Upper QE PHE 41 - QQD LEU 50 6.00 Upper HN ASP- 42 - QA GLY 48 2.00 Upper HA LEU 45 - QB TYR 59 17.00 Upper QB LEU 45 - HN GLY 49 13.75 Upper QB LEU 45 - QA GLY 49 13.75 Upper HB2 LEU 45 - HA2 GLY 49 13.75 Upper QB LEU 45 - QD ARG+ 52 4.00 Upper HB3 LEU 45 - HD2 ARG+ 52 4.00 Upper HB3 LEU 45 - HD3 ARG+ 52 4.00 Upper QB LEU 45 - QD TYR 59 17.00 Upper QQD LEU 45 - HN GLY 49 13.75 Upper QQD LEU 45 - QA GLY 49 13.75 Upper QD1 LEU 45 - HA1 GLY 49 13.75 Upper QD1 LEU 45 - HA2 GLY 49 13.75 Upper QQD LEU 45 - QD TYR 59 17.00 Upper QQD LEU 45 - QE TYR 59 17.00 Upper QB PRO 46 - QB TYR 59 20.00 Upper QB PRO 46 - QG2 ILE 61 2.00 Upper QG PRO 46 - QB TYR 59 20.00 Upper HG2 PRO 46 - HB2 TYR 59 20.00 Upper HG2 PRO 46 - HB3 TYR 59 20.00 Upper QG PRO 46 - QD TYR 59 20.00 Upper QD PRO 46 - QB TYR 59 20.00 Upper HD2 PRO 46 - HB2 TYR 59 20.00 Upper HD2 PRO 46 - HB3 TYR 59 20.00 Upper QA GLY 47 - HD2 HIS 51 2.75 Upper QA GLY 49 - QD TYR 59 6.00 Upper QA GLY 49 - QE TYR 59 6.00 Upper HN HIS 51 - QB PHE 60 3.75 Upper QB HIS 51 - QB LEU 66 9.00 Upper QB HIS 51 - HG LEU 66 9.00 Upper HE1 HIS 51 - QB SER 63 2.50 Upper HN ARG+ 52 - QQD LEU 66 11.00 Upper QB ARG+ 52 - QD TYR 59 15.75 Upper QB ARG+ 52 - QE TYR 59 15.75 Upper QG ARG+ 52 - QE TYR 59 15.75 Upper QD ARG+ 52 - QE TYR 59 15.75 Upper HN CYS- 53 - QQD LEU 66 11.00 Upper HA CYS- 53 - QQD LEU 66 11.00 Upper QB CYS- 53 - HN ALA 57 8.50 Upper QB CYS- 53 - HN ARG+ 58 7.00 Upper QB CYS- 53 - QE PHE 60 10.75 Upper QB CYS- 53 - HZ PHE 60 10.75 Upper QB CYS- 53 - HG LEU 66 11.00 Upper QB CYS- 53 - QQD LEU 66 11.00 Upper HB2 CYS- 53 - QD2 LEU 66 11.00 Upper HB3 CYS- 53 - QD2 LEU 66 11.00 Upper QB CYS- 53 - HD2 HIS 69 4.50 Upper QB CYS- 53 - QD PHE 70 5.50 Upper QB CYS- 53 - QE PHE 70 5.50 Upper QB CYSZ 56 - HE1 HIS 69 4.00 Upper QB PHE 60 - HN LEU 66 15.00 Upper QB PHE 60 - QQD LEU 66 15.00 Upper QD PHE 60 - QB LEU 66 15.00 Upper QD PHE 60 - QQD LEU 66 15.00 Upper QE PHE 60 - QQD LEU 66 15.00 Upper QE PHE 60 - QB HIS 69 3.00 Upper HN ILE 61 - QB ASN 65 23.00 Upper QG2 ILE 61 - QB ASN 65 23.00 Upper QG2 ILE 61 - QD2 ASN 65 23.00 Upper QG1 ILE 61 - QB ASN 65 23.00 Upper HG12 ILE 61 - HB2 ASN 65 23.00 Upper HG13 ILE 61 - HB2 ASN 65 23.00 Upper QG1 ILE 61 - QD2 ASN 65 23.00 Upper QD1 ILE 61 - QD2 ASN 65 23.00 Upper QQD LEU 66 - QD PHE 70 14.25 Upper QQD LEU 66 - QE PHE 70 14.25 Upper QQD LEU 66 - HZ PHE 70 14.25 Upper HE1 HIS 69 - QB HIS 75 3.50 Upper HA PHE 70 - QB HIS 75 6.50 Upper QB PHE 70 - HD2 HIS 75 6.50 Upper QG LYS+ 73 - HN LYS+ 77 5.50 Upper QE LYS+ 73 - QG LYS+ 77 5.50 Upper HD2 HIS 75 - QQD LEU 79 9.50 Upper HE1 HIS 75 - QQD LEU 79 9.50 Upper QG ARG+ 78 - QQD LEU 82 7.50 Upper QD ARG+ 78 - QQD LEU 82 7.50 Upper HD2 ARG+ 78 - QD1 LEU 82 7.50 Upper HD3 ARG+ 78 - QD1 LEU 82 7.50 Upper QB TYR 87 - QB GLU- 91 4.00 Upper QB TYR 87 - QB ALA 92 3.75 Upper QD TYR 87 - QB GLU- 91 4.00 Upper QE TYR 87 - QB GLU- 91 4.00 Upper QG GLN 89 - HN GLU- 93 0.50 - bc019267: write upl bc019267.upl Distance constraint file "bc019267.upl" written, 837 upper limits, 837 assignments. - bc019267: read aco bc019267.aco Angle constraint file "bc019267.aco" read, 46 constraints for 46 angles. - bc019267: distance stat Residue intra short med long Total 256 236 218 131 - bc019267: calc_all 100 command=anneal steps=10000 100 structures selected. 100 random structures created (seed 35621). Structure annealed in 13 s, f = 0.375986. Structure annealed in 13 s, f = 0.624386. Structure annealed in 13 s, f = 0.425628. Structure annealed in 13 s, f = 1.06949. Structure annealed in 13 s, f = 9.52446. Structure annealed in 13 s, f = 0.838048. Structure annealed in 14 s, f = 0.724150. Structure annealed in 13 s, f = 0.767345. Structure annealed in 13 s, f = 0.845786. Structure annealed in 13 s, f = 0.493467. Structure annealed in 13 s, f = 9.94278. Structure annealed in 13 s, f = 0.522990. Structure annealed in 13 s, f = 0.265596. Structure annealed in 13 s, f = 0.381028. Structure annealed in 13 s, f = 0.408877. Structure annealed in 13 s, f = 0.547771. Structure annealed in 13 s, f = 2.01907. Structure annealed in 13 s, f = 36.8493. Structure annealed in 13 s, f = 2.64510. Structure annealed in 13 s, f = 2.20148. Structure annealed in 13 s, f = 0.494049. Structure annealed in 13 s, f = 0.789930. Structure annealed in 13 s, f = 23.0069. Structure annealed in 13 s, f = 1.56903. Structure annealed in 13 s, f = 0.491251. Structure annealed in 13 s, f = 0.513243. Structure annealed in 13 s, f = 9.79778. Structure annealed in 13 s, f = 0.789184. Structure annealed in 13 s, f = 0.486501. Structure annealed in 13 s, f = 0.245583. Structure annealed in 13 s, f = 0.938848. Structure annealed in 13 s, f = 1.43630. Structure annealed in 13 s, f = 1.02536. Structure annealed in 13 s, f = 0.560227. Structure annealed in 13 s, f = 1.01434. Structure annealed in 13 s, f = 0.936380. Structure annealed in 13 s, f = 2.93980. Structure annealed in 14 s, f = 0.585632. Structure annealed in 13 s, f = 0.686732. Structure annealed in 13 s, f = 9.61564. Structure annealed in 13 s, f = 0.292072. Structure annealed in 13 s, f = 0.718840. Structure annealed in 13 s, f = 11.5172. Structure annealed in 13 s, f = 0.499299. Structure annealed in 13 s, f = 0.613979. Structure annealed in 13 s, f = 0.734857. Structure annealed in 13 s, f = 1.41499. Structure annealed in 13 s, f = 0.759960. Structure annealed in 13 s, f = 1.34491. Structure annealed in 13 s, f = 51.7359. Structure annealed in 13 s, f = 0.540141. Structure annealed in 13 s, f = 2.01082. Structure annealed in 13 s, f = 0.347789. Structure annealed in 13 s, f = 1.41696. Structure annealed in 13 s, f = 0.973996. Structure annealed in 13 s, f = 10.1315. Structure annealed in 13 s, f = 1.56632. Structure annealed in 13 s, f = 0.765489. Structure annealed in 13 s, f = 2.45950. Structure annealed in 13 s, f = 8.89466. Structure annealed in 13 s, f = 0.788005. Structure annealed in 13 s, f = 0.403865. Structure annealed in 13 s, f = 0.788134. Structure annealed in 13 s, f = 0.381276. Structure annealed in 13 s, f = 0.545188. Structure annealed in 13 s, f = 0.691833. Structure annealed in 13 s, f = 0.363486. Structure annealed in 13 s, f = 0.679245. Structure annealed in 13 s, f = 0.326242. Structure annealed in 13 s, f = 0.897781. Structure annealed in 13 s, f = 0.663665. Structure annealed in 14 s, f = 0.221968. Structure annealed in 13 s, f = 0.384356. Structure annealed in 13 s, f = 0.653426. Structure annealed in 13 s, f = 11.3385. Structure annealed in 13 s, f = 10.7335. Structure annealed in 13 s, f = 0.476896. Structure annealed in 13 s, f = 0.917186. Structure annealed in 13 s, f = 0.278244. Structure annealed in 14 s, f = 0.684491. Structure annealed in 13 s, f = 0.796432. Structure annealed in 13 s, f = 0.861421. Structure annealed in 13 s, f = 2.68911. Structure annealed in 13 s, f = 1.38030. Structure annealed in 13 s, f = 0.674683. Structure annealed in 13 s, f = 0.731268. Structure annealed in 13 s, f = 1.97077. Structure annealed in 13 s, f = 0.367828. Structure annealed in 13 s, f = 1.37533. Structure annealed in 14 s, f = 0.602538. Structure annealed in 13 s, f = 0.625296. Structure annealed in 13 s, f = 33.4378. Structure annealed in 13 s, f = 30.5993. Structure annealed in 13 s, f = 0.371462. Structure annealed in 13 s, f = 10.6665. Structure annealed in 13 s, f = 1.10609. Structure annealed in 13 s, f = 0.195275. Structure annealed in 13 s, f = 0.605216. Structure annealed in 14 s, f = 0.772075. Structure annealed in 13 s, f = 0.634715. 100 structures finished in 135 s (1 s/structure). - bc019267: overview structures=20 range=50..78 cor pdb full vdw 20 structures selected. Structural statistics: str target upper limits lower limits van der Waals torsion angles function # sum max # sum max # sum max # sum max 1 0.20 1 1.6 0.22 0 0.0 0.01 0 0.6 0.07 0 6.3 2.31 2 0.22 1 1.8 0.25 0 0.0 0.01 0 0.8 0.07 0 6.9 1.76 3 0.25 1 1.9 0.25 0 0.0 0.00 0 0.9 0.08 0 6.6 1.88 4 0.27 0 2.1 0.19 0 0.0 0.01 0 0.8 0.07 0 7.0 2.60 5 0.28 1 2.1 0.26 0 0.0 0.00 0 0.9 0.07 0 8.4 2.95 6 0.29 0 2.0 0.19 0 0.0 0.00 0 0.9 0.10 0 5.8 1.96 7 0.33 0 2.4 0.18 0 0.0 0.00 0 1.1 0.09 0 9.7 2.58 8 0.35 0 2.5 0.20 0 0.0 0.01 0 1.0 0.09 0 7.4 3.08 9 0.36 1 2.8 0.26 0 0.0 0.01 0 1.2 0.07 0 12.0 2.30 10 0.37 0 2.9 0.18 0 0.0 0.00 0 1.0 0.07 0 10.0 2.81 11 0.37 2 2.4 0.31 0 0.0 0.01 0 0.7 0.07 0 7.2 2.19 12 0.38 1 2.1 0.27 0 0.0 0.01 0 1.2 0.09 0 7.2 3.42 13 0.38 0 2.2 0.15 0 0.0 0.01 1 1.1 0.23 0 8.9 2.70 14 0.38 2 2.4 0.25 0 0.0 0.01 0 1.3 0.11 0 7.2 2.47 15 0.38 1 2.4 0.22 0 0.0 0.01 0 1.4 0.12 0 10.6 2.98 16 0.40 3 2.2 0.31 0 0.0 0.00 0 1.0 0.11 0 6.5 1.79 17 0.41 2 2.8 0.24 0 0.0 0.01 0 1.3 0.08 0 6.7 1.92 18 0.43 1 3.0 0.24 0 0.0 0.01 0 1.0 0.07 0 6.8 2.13 19 0.48 1 2.5 0.22 0 0.0 0.01 1 1.5 0.21 0 10.2 2.90 20 0.49 2 3.2 0.31 0 0.0 0.00 0 0.9 0.05 0 10.9 3.20 Ave 0.35 1 2.4 0.24 0 0.0 0.01 0 1.0 0.10 0 8.1 2.50 +/- 7.71E-02 1 0.4 0.04 0 0.0 0.00 0 0.2 0.04 0 1.8 0.49 Min 0.20 0 1.6 0.15 0 0.0 0.00 0 0.6 0.05 0 5.8 1.76 Max 0.49 3 3.2 0.31 0 0.0 0.01 1 1.5 0.23 0 12.0 3.42 Overview file "bc019267.ovw" written. DG coordinate file "bc019267.cor" written, 20 conformers. PDB coordinate file "bc019267.pdb" written, 20 conformers. - bc019267: ramachandran file=rama.ps nobackground label Struct fav add gen dis ------ --- --- --- --- 1 40 14 1 1 (TYR 87) 2 39 17 0 0 3 37 14 5 0 4 40 12 3 1 (ARG+ 94) 5 37 14 4 1 (MET 98) 6 41 13 1 1 (ALA 96) 7 36 15 5 0 8 37 15 3 1 (ARG+ 94) 9 37 15 4 0 10 37 14 5 0 11 35 17 2 2 (GLU- 40, TYR 87) 12 36 16 3 1 (VAL 84) 13 36 17 2 1 (GLU- 40) 14 39 13 4 0 15 37 14 4 1 (MET 98) 16 41 11 4 0 17 38 15 2 1 (TYR 87) 18 39 14 3 0 19 37 15 0 4 (GLU- 40, TYR 87, MET 98, SER 100) 20 40 10 6 0 all 68% 25% 5% 1% *** ERROR: Graphics file "rama.grf" not found. *** FATAL ERROR: Program aborted. MPI_Recv: process in local group is dead (rank 6, MPI_COMM_WORLD) MPI_Recv: process in local group is dead (rank 7, MPI_COMM_WORLD) Rank (6, MPI_COMM_WORLD): Call stack within LAM: Rank (6, MPI_COMM_WORLD): - MPI_Recv() Rank (6, MPI_COMM_WORLD): - MPI_Bcast() Rank (6, MPI_COMM_WORLD): - main() MPI_Recv: process in local group is dead (rank 10, MPI_COMM_WORLD) Rank (7, MPI_COMM_WORLD): Call stack within LAM: Rank (7, MPI_COMM_WORLD): - MPI_Recv() Rank (7, MPI_COMM_WORLD): - MPI_Bcast() Rank (7, MPI_COMM_WORLD): - main() Rank (10, MPI_COMM_WORLD): Call stack within LAM: Rank (10, MPI_COMM_WORLD): - MPI_Recv() Rank (10, MPI_COMM_WORLD): - MPI_Bcast() Rank (10, MPI_COMM_WORLD): - main() LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University 23-Mar-2005 22:53:14